Wall clock time and date at job start Tue Mar 31 2020 16:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34859 * 125.96708 * 2 1 4 4 N 1.36310 * 106.68729 * 180.02562 * 3 2 1 5 5 C 1.35693 * 107.60938 * 359.94532 * 4 3 2 6 6 N 1.30094 * 108.55157 * 0.02562 * 5 4 3 7 7 C 1.51046 * 124.06009 * 179.97438 * 5 4 3 8 8 C 1.53393 * 108.21108 * 16.00183 * 7 5 4 9 9 H 1.09004 * 109.50855 * 71.11455 * 8 7 5 10 10 C 1.50703 * 109.54884 * 191.22798 * 8 7 5 11 11 O 1.21286 * 119.99852 * 119.78761 * 10 8 7 12 12 N 1.34779 * 119.99979 * 299.79415 * 10 8 7 13 13 C 1.46501 * 119.99898 * 179.97438 * 12 10 8 14 14 H 1.09000 * 109.46900 * 34.99637 * 13 12 10 15 15 C 1.50696 * 109.46927 * 154.99885 * 13 12 10 16 16 H 1.07994 * 120.00044 * 359.97438 * 15 13 12 17 17 C 1.37886 * 119.99722 * 180.02562 * 15 13 12 18 18 N 1.31516 * 119.99910 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99776 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47211 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47026 * 119.99780 * 19 17 15 22 22 H 1.48496 * 109.46752 * 239.99712 * 19 17 15 23 23 C 1.53003 * 109.46841 * 275.00098 * 13 12 10 24 24 F 1.39902 * 109.47430 * 60.00139 * 23 13 12 25 25 F 1.39902 * 109.47078 * 180.02562 * 23 13 12 26 26 F 1.39898 * 109.47132 * 299.99925 * 23 13 12 27 27 C 1.53148 * 109.24450 * 311.18185 * 8 7 5 28 28 C 1.46474 * 127.77431 * 179.91740 * 4 3 2 29 29 H 1.09003 * 109.47280 * 89.99748 * 1 2 3 30 30 H 1.08998 * 109.47915 * 209.99799 * 1 2 3 31 31 H 1.09003 * 109.47395 * 330.00313 * 1 2 3 32 32 H 1.08001 * 126.65020 * 0.02562 * 3 2 1 33 33 H 1.09003 * 109.71325 * 256.32622 * 7 5 4 34 34 H 1.08995 * 109.71430 * 135.68496 * 7 5 4 35 35 H 0.96997 * 120.00115 * 359.97438 * 12 10 8 36 36 H 0.97000 * 120.00034 * 179.97438 * 18 17 15 37 37 H 1.08995 * 109.47074 * 309.47153 * 27 8 7 38 38 H 1.09000 * 109.46697 * 189.48272 * 27 8 7 39 39 H 1.09002 * 109.58719 * 77.39775 * 28 4 3 40 40 H 1.09005 * 109.58011 * 317.12294 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6414 -0.0006 5 6 3.5461 -0.7149 0.0003 6 7 2.3012 -1.0927 0.0008 7 6 4.7723 -1.5970 -0.0005 8 6 5.9798 -0.7397 0.3993 9 1 5.9128 -0.4876 1.4576 10 6 7.2506 -1.5086 0.1445 11 8 8.0789 -1.0727 -0.6268 12 7 7.4666 -2.6808 0.7738 13 6 8.7018 -3.4286 0.5257 14 1 9.5244 -2.7303 0.3714 15 6 9.0041 -4.3068 1.7124 16 1 8.3427 -4.3076 2.5661 17 6 10.1259 -5.1087 1.7086 18 7 10.9316 -5.1073 0.6691 19 14 10.5003 -6.1979 3.1792 20 1 9.4467 -6.0173 4.2100 21 1 10.5328 -7.6184 2.7475 22 1 11.8193 -5.8235 3.7493 23 6 8.5299 -4.2978 -0.7216 24 9 8.2492 -3.4824 -1.8233 25 9 9.7092 -5.0123 -0.9582 26 9 7.4740 -5.1939 -0.5237 27 6 5.9841 0.5456 -0.4334 28 6 4.8148 1.4380 -0.0025 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3635 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.9763 2.1222 0.0004 33 1 4.9279 -2.0093 -0.9975 34 1 4.6428 -2.4072 0.7169 35 1 6.8043 -3.0293 1.3909 36 1 11.7209 -5.6711 0.6666 37 1 5.8802 0.2950 -1.4890 38 1 6.9231 1.0767 -0.2769 39 1 5.0005 1.8259 0.9991 40 1 4.7115 2.2675 -0.7021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928800269.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:40 Heat of formation + Delta-G solvation = -144.507655 kcal Electronic energy + Delta-G solvation = -29445.347595 eV Core-core repulsion = 24845.393756 eV Total energy + Delta-G solvation = -4599.953839 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.41471 -48.05117 -47.72628 -43.23848 -40.88848 -37.43498 -36.45539 -34.67699 -34.14568 -32.43126 -30.68836 -29.60710 -28.05628 -26.59458 -25.15277 -24.32875 -22.97829 -21.60567 -21.09719 -20.11105 -19.30051 -18.86932 -18.64842 -18.32390 -17.78674 -17.38046 -16.90014 -16.75771 -16.18404 -15.90487 -15.16500 -15.11373 -14.97783 -14.88898 -14.69384 -14.61996 -14.48223 -14.41886 -14.28879 -14.03463 -13.89766 -13.80825 -13.48446 -13.13805 -13.05516 -12.79668 -12.73792 -12.66319 -12.56771 -12.26330 -12.18704 -12.12205 -11.55212 -10.93325 -10.81210 -10.70062 -10.43994 -10.07723 -9.10787 -8.21999 -6.52238 1.10229 1.45206 1.47632 1.57174 1.59948 1.87374 2.07260 2.14450 2.38753 2.53303 2.93951 3.15920 3.49526 3.51587 3.59098 3.78023 3.86286 4.00324 4.07052 4.12668 4.22891 4.27260 4.37409 4.48675 4.52906 4.64537 4.74814 4.87671 4.93008 4.93962 5.05374 5.09694 5.19314 5.39327 5.40459 5.53748 5.65082 5.91421 6.24690 6.52933 6.67765 7.16079 7.16496 7.31276 8.70763 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.019791 B = 0.003230 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.437748 B = 8666.747406 C = 8895.307651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.044 4.044 3 C -0.039 4.039 4 N -0.457 5.457 5 C 0.199 3.801 6 N -0.525 5.525 7 C -0.020 4.020 8 C -0.094 4.094 9 H 0.130 0.870 10 C 0.512 3.488 11 O -0.570 6.570 12 N -0.704 5.704 13 C 0.252 3.748 14 H 0.051 0.949 15 C -0.560 4.560 16 H 0.093 0.907 17 C 0.015 3.985 18 N -0.874 5.874 19 Si 0.981 3.019 20 H -0.255 1.255 21 H -0.283 1.283 22 H -0.277 1.277 23 C 0.412 3.588 24 F -0.219 7.219 25 F -0.152 7.152 26 F -0.203 7.203 27 C -0.113 4.113 28 C 0.108 3.892 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.212 0.788 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.413 0.587 36 H 0.268 0.732 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.523 13.508 2.287 19.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.171 4.171 3 C -0.172 4.172 4 N -0.140 5.140 5 C -0.064 4.064 6 N -0.246 5.246 7 C -0.059 4.059 8 C -0.116 4.116 9 H 0.148 0.852 10 C 0.299 3.701 11 O -0.449 6.449 12 N -0.354 5.354 13 C 0.145 3.855 14 H 0.069 0.931 15 C -0.597 4.597 16 H 0.111 0.889 17 C -0.190 4.190 18 N -0.508 5.508 19 Si 0.804 3.196 20 H -0.179 1.179 21 H -0.209 1.209 22 H -0.203 1.203 23 C 0.356 3.644 24 F -0.201 7.201 25 F -0.133 7.133 26 F -0.185 7.185 27 C -0.151 4.151 28 C -0.013 4.013 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.229 0.771 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.250 0.750 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.902 13.036 1.632 19.128 hybrid contribution 0.614 -0.535 0.126 0.824 sum -13.288 12.501 1.758 18.328 Atomic orbital electron populations 1.20036 0.86058 1.03195 1.02485 1.21601 0.97849 0.88392 1.09290 1.22852 0.82135 1.01460 1.10728 1.45666 1.07696 1.06846 1.53767 1.23098 0.94287 0.82649 1.06410 1.70193 1.00756 1.32057 1.21559 1.20030 0.86216 0.95788 1.03889 1.21369 0.90204 0.95737 1.04307 0.85226 1.21038 0.88548 0.81081 0.79431 1.90696 1.48117 1.69159 1.36885 1.45983 1.21705 1.21580 1.46145 1.19324 0.85243 0.90342 0.90588 0.93135 1.21269 1.10708 1.25851 1.01883 0.88928 1.25975 0.95657 0.98057 0.99301 1.70531 1.13000 1.38438 1.28838 0.85147 0.78537 0.77478 0.78401 1.17859 1.20907 1.20302 1.23367 0.73695 0.80804 0.86551 1.93060 1.93994 1.73577 1.59483 1.93376 1.45758 1.79307 1.94869 1.92993 1.59263 1.70948 1.95326 1.21692 0.99423 0.94191 0.99755 1.22245 0.79722 0.93798 1.05495 0.91222 0.92364 0.88935 0.77147 0.90429 0.87570 0.74988 0.92212 0.91697 0.87631 0.87002 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.00 10.42 71.23 0.74 -0.26 16 2 C -0.04 -1.03 7.12 41.28 0.29 -0.73 16 3 C -0.04 -0.71 11.55 83.22 0.96 0.26 16 4 N -0.46 -9.20 3.14 -513.55 -1.61 -10.81 16 5 C 0.20 5.25 7.66 138.15 1.06 6.31 16 6 N -0.52 -15.77 11.28 -174.97 -1.97 -17.74 16 7 C -0.02 -0.51 5.47 30.09 0.16 -0.35 16 8 C -0.09 -2.26 2.54 -11.36 -0.03 -2.29 16 9 H 0.13 2.46 8.12 -2.39 -0.02 2.44 16 10 C 0.51 17.93 6.67 87.66 0.58 18.51 16 11 O -0.57 -24.59 14.40 -3.05 -0.04 -24.63 16 12 N -0.70 -26.54 4.89 -446.08 -2.18 -28.73 16 13 C 0.25 12.18 2.21 44.24 0.10 12.28 16 14 H 0.05 2.80 7.58 -2.39 -0.02 2.78 16 15 C -0.56 -27.53 8.46 25.60 0.22 -27.32 16 16 H 0.09 4.19 7.74 -2.91 -0.02 4.16 16 17 C 0.02 0.78 5.20 84.66 0.44 1.22 16 18 N -0.87 -47.78 9.50 21.45 0.20 -47.58 16 19 Si 0.98 40.00 29.54 68.60 2.03 42.03 16 20 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 21 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 22 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 23 C 0.41 20.97 2.81 71.98 0.20 21.17 16 24 F -0.22 -11.06 15.68 44.97 0.71 -10.36 16 25 F -0.15 -8.50 12.91 44.97 0.58 -7.92 16 26 F -0.20 -9.87 16.94 44.97 0.76 -9.11 16 27 C -0.11 -2.28 4.67 30.74 0.14 -2.13 16 28 C 0.11 1.47 6.97 86.48 0.60 2.08 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.21 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.08 2.26 8.11 -2.39 -0.02 2.24 16 34 H 0.11 2.58 7.95 -2.39 -0.02 2.56 16 35 H 0.41 13.16 8.26 -92.71 -0.77 12.39 16 36 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 37 H 0.06 1.55 8.12 -2.39 -0.02 1.53 16 38 H 0.11 2.11 7.79 -2.39 -0.02 2.09 16 39 H 0.11 1.04 8.14 -2.39 -0.02 1.03 16 40 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -70.31 342.12 4.27 -66.04 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.33 Total: 20.05 kcal Atomic # 6 Polarization: 23.27 SS G_CDS: 5.48 Total: 28.75 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -5.56 Total: -104.86 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.04 Total: -24.63 kcal Atomic # 9 Polarization: -29.43 SS G_CDS: 2.05 Total: -27.38 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -70.31 4.27 -66.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928800269.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.465 kcal (2) G-P(sol) polarization free energy of solvation -70.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds