Wall clock time and date at job start Tue Mar 31 2020 16:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34855 * 125.96403 * 2 1 4 4 N 1.36315 * 106.68955 * 179.97438 * 3 2 1 5 5 C 1.35422 * 107.39459 * 359.94975 * 4 3 2 6 6 N 1.30086 * 108.63270 * 0.06524 * 5 4 3 7 7 C 1.51052 * 123.98009 * 180.10745 * 5 4 3 8 8 C 1.53402 * 108.20773 * 15.94078 * 7 5 4 9 9 H 1.09002 * 109.51260 * 71.11045 * 8 7 5 10 10 C 1.50700 * 109.54521 * 191.23176 * 8 7 5 11 11 O 1.21276 * 120.00446 * 119.88269 * 10 8 7 12 12 N 1.34785 * 119.99716 * 299.87720 * 10 8 7 13 13 C 1.46495 * 119.99732 * 180.02562 * 12 10 8 14 14 H 1.09003 * 109.47635 * 324.99861 * 13 12 10 15 15 C 1.50707 * 109.46919 * 205.00008 * 13 12 10 16 16 H 1.07998 * 119.99662 * 0.02562 * 15 13 12 17 17 C 1.37876 * 119.99671 * 179.97438 * 15 13 12 18 18 N 1.31514 * 120.00320 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 119.99828 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46686 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47292 * 120.00050 * 19 17 15 22 22 H 1.48501 * 109.47021 * 240.00740 * 19 17 15 23 23 C 1.53004 * 109.47227 * 85.00173 * 13 12 10 24 24 F 1.39894 * 109.47030 * 59.99863 * 23 13 12 25 25 F 1.39901 * 109.47074 * 179.97438 * 23 13 12 26 26 F 1.39898 * 109.46999 * 299.99845 * 23 13 12 27 27 C 1.53148 * 109.24064 * 311.17823 * 8 7 5 28 28 C 1.46467 * 127.77819 * 179.91286 * 4 3 2 29 29 H 1.08993 * 109.47365 * 89.99514 * 1 2 3 30 30 H 1.08991 * 109.47002 * 210.00159 * 1 2 3 31 31 H 1.09006 * 109.46791 * 329.99684 * 1 2 3 32 32 H 1.07998 * 126.65487 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.71479 * 256.26377 * 7 5 4 34 34 H 1.09002 * 109.71395 * 135.61611 * 7 5 4 35 35 H 0.96996 * 120.00076 * 0.02562 * 12 10 8 36 36 H 0.97003 * 119.99826 * 179.97438 * 18 17 15 37 37 H 1.08997 * 109.46769 * 189.49719 * 27 8 7 38 38 H 1.09001 * 109.46976 * 309.48483 * 27 8 7 39 39 H 1.09000 * 109.58175 * 77.36285 * 28 4 3 40 40 H 1.08996 * 109.69774 * 317.01745 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6415 0.0006 5 6 3.5413 -0.7120 0.0021 6 7 2.2957 -1.0869 0.0010 7 6 4.7655 -1.5968 0.0055 8 6 5.9740 -0.7416 0.4070 9 1 5.9050 -0.4878 1.4649 10 6 7.2437 -1.5137 0.1564 11 8 8.0756 -1.0800 -0.6121 12 7 7.4548 -2.6863 0.7865 13 6 8.6893 -3.4367 0.5433 14 1 8.9916 -3.3119 -0.4965 15 6 8.4528 -4.8980 0.8257 16 1 7.4801 -5.2342 1.1532 17 6 9.4780 -5.8058 0.6651 18 7 10.6623 -5.3965 0.2658 19 14 9.1847 -7.6173 1.0144 20 1 7.7779 -7.8167 1.4460 21 1 9.4409 -8.4068 -0.2170 22 1 10.1021 -8.0685 2.0916 23 6 9.7945 -2.9120 1.4622 24 9 9.4066 -3.0722 2.7967 25 9 10.9732 -3.6289 1.2303 26 9 10.0139 -1.5554 1.2000 27 6 5.9832 0.5425 -0.4275 28 6 4.8149 1.4381 -0.0009 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.9764 2.1222 -0.0004 33 1 4.9227 -2.0108 -0.9905 34 1 4.6325 -2.4057 0.7239 35 1 6.7893 -3.0334 1.4010 36 1 11.3837 -6.0352 0.1532 37 1 6.9230 1.0716 -0.2697 38 1 5.8811 0.2905 -1.4831 39 1 4.9994 1.8270 1.0005 40 1 4.7148 2.2667 -0.7020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928800270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:43 Heat of formation + Delta-G solvation = -124.140771 kcal Electronic energy + Delta-G solvation = -29316.218127 eV Core-core repulsion = 24717.147462 eV Total energy + Delta-G solvation = -4599.070665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.41198 -46.07048 -45.66867 -42.42219 -39.47501 -36.40220 -34.74904 -33.47955 -32.54348 -31.61919 -29.34526 -28.31104 -27.10088 -24.63751 -24.19581 -23.17084 -21.37499 -20.49530 -19.81081 -19.15743 -17.62123 -17.06005 -16.82729 -16.72696 -16.51727 -15.91802 -15.77479 -15.11498 -14.82797 -14.52490 -14.22914 -14.06342 -13.80812 -13.50009 -13.25799 -13.02281 -12.96604 -12.66050 -12.51345 -12.46924 -12.39209 -12.32555 -12.04448 -11.90837 -11.83527 -11.75384 -11.32301 -11.20863 -11.15584 -10.89147 -10.82888 -10.44138 -9.96432 -9.69934 -9.56739 -9.33188 -8.77488 -8.36703 -8.24802 -6.28125 -4.52186 1.96054 2.67646 2.98795 3.03991 3.16474 3.24163 3.27356 3.58007 4.14379 4.19266 4.35370 4.45353 4.51152 4.59360 4.84346 4.89044 4.97764 5.03069 5.08632 5.15681 5.25355 5.39159 5.58365 5.62233 5.63878 5.75805 5.78388 5.80919 5.85939 5.94507 6.00956 6.15435 6.26791 6.72877 6.85615 7.06052 7.10043 7.40964 7.58752 8.08444 8.19978 8.44980 8.74274 9.16170 10.63527 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.017658 B = 0.003374 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.268417 B = 8295.708995 C = 9414.549126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.007 4.007 3 C -0.059 4.059 4 N -0.455 5.455 5 C 0.219 3.781 6 N -0.486 5.486 7 C -0.025 4.025 8 C -0.112 4.112 9 H 0.101 0.899 10 C 0.514 3.486 11 O -0.532 6.532 12 N -0.708 5.708 13 C 0.244 3.756 14 H 0.086 0.914 15 C -0.552 4.552 16 H 0.079 0.921 17 C 0.065 3.935 18 N -0.840 5.840 19 Si 0.915 3.085 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.417 3.583 24 F -0.209 7.209 25 F -0.136 7.136 26 F -0.219 7.219 27 C -0.115 4.115 28 C 0.104 3.896 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.172 0.828 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.400 0.600 36 H 0.268 0.732 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.832 11.836 0.748 17.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.136 4.136 3 C -0.191 4.191 4 N -0.138 5.138 5 C -0.044 4.044 6 N -0.205 5.205 7 C -0.064 4.064 8 C -0.134 4.134 9 H 0.120 0.880 10 C 0.298 3.702 11 O -0.408 6.408 12 N -0.357 5.357 13 C 0.139 3.861 14 H 0.104 0.896 15 C -0.589 4.589 16 H 0.097 0.903 17 C -0.144 4.144 18 N -0.473 5.473 19 Si 0.741 3.259 20 H -0.193 1.193 21 H -0.205 1.205 22 H -0.206 1.206 23 C 0.360 3.640 24 F -0.191 7.191 25 F -0.117 7.117 26 F -0.201 7.201 27 C -0.153 4.153 28 C -0.018 4.018 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.189 0.811 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.234 0.766 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.128 11.391 0.151 16.639 hybrid contribution 0.176 0.014 0.762 0.782 sum -11.952 11.405 0.913 16.545 Atomic orbital electron populations 1.19982 0.87829 1.02412 1.01957 1.20792 0.96415 0.88384 1.08023 1.22262 0.82959 1.00269 1.13659 1.45403 1.06564 1.07502 1.54362 1.23156 0.94681 0.81544 1.05008 1.69961 0.99667 1.30330 1.20547 1.20163 0.85880 0.95489 1.04868 1.21437 0.93648 0.95953 1.02357 0.88048 1.20178 0.87406 0.81621 0.80988 1.90712 1.46077 1.68102 1.35934 1.46099 1.22331 1.21338 1.45901 1.19759 0.78530 0.91729 0.96110 0.89639 1.20924 0.99170 0.88498 1.50324 0.90264 1.25085 0.94523 1.00445 0.94337 1.70403 1.01602 1.34247 1.41023 0.86157 0.78723 0.82841 0.78142 1.19292 1.20534 1.20571 1.23164 0.86951 0.73712 0.80143 1.92990 1.91541 1.95426 1.39154 1.93410 1.49299 1.75420 1.93595 1.93062 1.95837 1.37253 1.93925 1.21723 0.97915 0.94647 1.01027 1.22066 0.82017 0.94416 1.03324 0.91664 0.91278 0.91608 0.81099 0.88410 0.87853 0.76598 0.92136 0.87912 0.89876 0.89583 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.42 36.01 0.38 -0.21 16 2 C -0.01 -0.09 7.10 -82.72 -0.59 -0.67 16 3 C -0.06 -0.63 11.55 -16.76 -0.19 -0.83 16 4 N -0.46 -5.19 3.13 -113.76 -0.36 -5.55 16 5 C 0.22 2.96 7.65 -155.24 -1.19 1.77 16 6 N -0.49 -7.32 11.24 -6.88 -0.08 -7.39 16 7 C -0.02 -0.31 5.47 -27.50 -0.15 -0.46 16 8 C -0.11 -1.41 2.55 -91.49 -0.23 -1.64 16 9 H 0.10 1.14 8.12 -51.93 -0.42 0.72 16 10 C 0.51 9.00 6.67 -10.98 -0.07 8.93 16 11 O -0.53 -11.25 14.40 5.56 0.08 -11.17 16 12 N -0.71 -13.34 4.89 -54.93 -0.27 -13.61 16 13 C 0.24 5.79 2.21 -69.08 -0.15 5.64 16 14 H 0.09 2.28 7.58 -51.93 -0.39 1.88 16 15 C -0.55 -13.63 8.46 -34.44 -0.29 -13.92 16 16 H 0.08 1.85 7.74 -52.49 -0.41 1.44 16 17 C 0.06 1.65 5.20 -17.82 -0.09 1.56 16 18 N -0.84 -22.55 9.50 55.43 0.53 -22.02 16 19 Si 0.91 19.78 29.54 -169.99 -5.02 14.76 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 C 0.42 10.32 2.81 37.16 0.10 10.42 16 24 F -0.21 -5.00 16.94 2.25 0.04 -4.96 16 25 F -0.14 -3.69 12.91 2.25 0.03 -3.66 16 26 F -0.22 -5.32 15.68 2.25 0.04 -5.29 16 27 C -0.12 -1.26 4.67 -26.52 -0.12 -1.39 16 28 C 0.10 0.90 6.98 -3.92 -0.03 0.88 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.10 1.28 8.11 -51.93 -0.42 0.86 16 34 H 0.10 1.22 7.95 -51.93 -0.41 0.81 16 35 H 0.40 6.51 8.26 -40.82 -0.34 6.17 16 36 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 37 H 0.10 1.15 7.79 -51.93 -0.40 0.75 16 38 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 342.03 15.07 5.15 5.15 Total: -1.00 -31.55 342.03 -7.38 -38.93 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -4.89 Total: 4.73 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: -2.63 Total: 10.07 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -0.18 Total: -48.58 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.08 Total: -11.17 kcal Atomic # 9 Polarization: -14.01 SS G_CDS: 0.10 Total: -13.90 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.55 -7.38 -38.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928800270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.208 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds