Wall clock time and date at job start Tue Mar 31 2020 16:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34855 * 125.96403 * 2 1 4 4 N 1.36315 * 106.68955 * 179.97438 * 3 2 1 5 5 C 1.35422 * 107.39459 * 359.94975 * 4 3 2 6 6 N 1.30086 * 108.63270 * 0.06524 * 5 4 3 7 7 C 1.51052 * 123.98009 * 180.10745 * 5 4 3 8 8 C 1.53402 * 108.20773 * 15.94078 * 7 5 4 9 9 H 1.09002 * 109.51260 * 71.11045 * 8 7 5 10 10 C 1.50700 * 109.54521 * 191.23176 * 8 7 5 11 11 O 1.21276 * 120.00446 * 119.88269 * 10 8 7 12 12 N 1.34785 * 119.99716 * 299.87720 * 10 8 7 13 13 C 1.46495 * 119.99732 * 180.02562 * 12 10 8 14 14 H 1.09003 * 109.47635 * 324.99861 * 13 12 10 15 15 C 1.50707 * 109.46919 * 205.00008 * 13 12 10 16 16 H 1.07998 * 119.99662 * 0.02562 * 15 13 12 17 17 C 1.37876 * 119.99671 * 179.97438 * 15 13 12 18 18 N 1.31514 * 120.00320 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 119.99828 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46686 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47292 * 120.00050 * 19 17 15 22 22 H 1.48501 * 109.47021 * 240.00740 * 19 17 15 23 23 C 1.53004 * 109.47227 * 85.00173 * 13 12 10 24 24 F 1.39894 * 109.47030 * 59.99863 * 23 13 12 25 25 F 1.39901 * 109.47074 * 179.97438 * 23 13 12 26 26 F 1.39898 * 109.46999 * 299.99845 * 23 13 12 27 27 C 1.53148 * 109.24064 * 311.17823 * 8 7 5 28 28 C 1.46467 * 127.77819 * 179.91286 * 4 3 2 29 29 H 1.08993 * 109.47365 * 89.99514 * 1 2 3 30 30 H 1.08991 * 109.47002 * 210.00159 * 1 2 3 31 31 H 1.09006 * 109.46791 * 329.99684 * 1 2 3 32 32 H 1.07998 * 126.65487 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.71479 * 256.26377 * 7 5 4 34 34 H 1.09002 * 109.71395 * 135.61611 * 7 5 4 35 35 H 0.96996 * 120.00076 * 0.02562 * 12 10 8 36 36 H 0.97003 * 119.99826 * 179.97438 * 18 17 15 37 37 H 1.08997 * 109.46769 * 189.49719 * 27 8 7 38 38 H 1.09001 * 109.46976 * 309.48483 * 27 8 7 39 39 H 1.09000 * 109.58175 * 77.36285 * 28 4 3 40 40 H 1.08996 * 109.69774 * 317.01745 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6415 0.0006 5 6 3.5413 -0.7120 0.0021 6 7 2.2957 -1.0869 0.0010 7 6 4.7655 -1.5968 0.0055 8 6 5.9740 -0.7416 0.4070 9 1 5.9050 -0.4878 1.4649 10 6 7.2437 -1.5137 0.1564 11 8 8.0756 -1.0800 -0.6121 12 7 7.4548 -2.6863 0.7865 13 6 8.6893 -3.4367 0.5433 14 1 8.9916 -3.3119 -0.4965 15 6 8.4528 -4.8980 0.8257 16 1 7.4801 -5.2342 1.1532 17 6 9.4780 -5.8058 0.6651 18 7 10.6623 -5.3965 0.2658 19 14 9.1847 -7.6173 1.0144 20 1 7.7779 -7.8167 1.4460 21 1 9.4409 -8.4068 -0.2170 22 1 10.1021 -8.0685 2.0916 23 6 9.7945 -2.9120 1.4622 24 9 9.4066 -3.0722 2.7967 25 9 10.9732 -3.6289 1.2303 26 9 10.0139 -1.5554 1.2000 27 6 5.9832 0.5425 -0.4275 28 6 4.8149 1.4381 -0.0009 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.9764 2.1222 -0.0004 33 1 4.9227 -2.0108 -0.9905 34 1 4.6325 -2.4057 0.7239 35 1 6.7893 -3.0334 1.4010 36 1 11.3837 -6.0352 0.1532 37 1 6.9230 1.0716 -0.2697 38 1 5.8811 0.2905 -1.4831 39 1 4.9994 1.8270 1.0005 40 1 4.7148 2.2667 -0.7020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928800270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:43 Heat of formation + Delta-G solvation = -143.375199 kcal Electronic energy + Delta-G solvation = -29317.052194 eV Core-core repulsion = 24717.147462 eV Total energy + Delta-G solvation = -4599.904733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.41555 -48.05029 -47.72477 -43.30739 -40.89614 -37.45976 -36.45873 -34.67722 -34.14810 -32.43094 -30.69093 -29.60565 -28.05222 -26.59070 -25.15479 -24.33573 -22.98382 -21.61667 -21.09745 -20.10639 -19.31850 -18.87215 -18.66992 -18.24594 -17.78584 -17.41744 -16.97795 -16.72324 -16.18316 -15.85200 -15.16065 -15.12379 -14.97830 -14.89970 -14.71617 -14.63595 -14.47180 -14.38789 -14.28485 -14.03202 -13.88827 -13.81873 -13.45898 -13.15825 -13.05152 -12.80089 -12.74414 -12.65488 -12.55201 -12.26058 -12.18849 -12.11744 -11.55236 -10.91994 -10.80972 -10.69927 -10.44959 -10.07656 -9.09811 -8.21981 -6.51979 1.10641 1.45262 1.47595 1.57836 1.60015 1.87614 2.10210 2.13598 2.38291 2.53645 2.94008 3.17733 3.49813 3.51003 3.60593 3.78023 3.86005 4.00315 4.06950 4.13035 4.24069 4.26982 4.37733 4.49221 4.54088 4.65513 4.76437 4.88802 4.92848 4.94548 5.06209 5.09422 5.19894 5.39614 5.41692 5.54030 5.65313 5.92147 6.25331 6.53214 6.67739 7.16663 7.18883 7.31293 8.70704 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.017658 B = 0.003374 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.268417 B = 8295.708995 C = 9414.549126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.039 4.039 3 C -0.045 4.045 4 N -0.454 5.454 5 C 0.197 3.803 6 N -0.524 5.524 7 C -0.018 4.018 8 C -0.095 4.095 9 H 0.124 0.876 10 C 0.512 3.488 11 O -0.570 6.570 12 N -0.704 5.704 13 C 0.251 3.749 14 H 0.050 0.950 15 C -0.560 4.560 16 H 0.092 0.908 17 C 0.016 3.984 18 N -0.874 5.874 19 Si 0.979 3.021 20 H -0.256 1.256 21 H -0.278 1.278 22 H -0.282 1.282 23 C 0.414 3.586 24 F -0.203 7.203 25 F -0.152 7.152 26 F -0.218 7.218 27 C -0.113 4.113 28 C 0.108 3.892 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.210 0.790 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.413 0.587 36 H 0.268 0.732 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.109 0.891 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.782 13.102 1.653 19.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.167 4.167 3 C -0.178 4.178 4 N -0.137 5.137 5 C -0.066 4.066 6 N -0.244 5.244 7 C -0.058 4.058 8 C -0.117 4.117 9 H 0.141 0.859 10 C 0.299 3.701 11 O -0.449 6.449 12 N -0.354 5.354 13 C 0.144 3.856 14 H 0.067 0.933 15 C -0.597 4.597 16 H 0.110 0.890 17 C -0.189 4.189 18 N -0.508 5.508 19 Si 0.803 3.197 20 H -0.180 1.180 21 H -0.204 1.204 22 H -0.207 1.207 23 C 0.357 3.643 24 F -0.185 7.185 25 F -0.133 7.133 26 F -0.200 7.200 27 C -0.151 4.151 28 C -0.013 4.013 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.227 0.773 33 H 0.103 0.897 34 H 0.125 0.875 35 H 0.250 0.750 36 H 0.078 0.922 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.127 0.873 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.111 12.675 1.070 18.998 hybrid contribution 0.774 -0.305 0.453 0.948 sum -13.337 12.369 1.523 18.253 Atomic orbital electron populations 1.20043 0.86087 1.03175 1.02523 1.21401 0.97884 0.88424 1.09033 1.22862 0.82199 1.01513 1.11215 1.45590 1.07660 1.06966 1.53473 1.23079 0.94347 0.82652 1.06513 1.69893 1.00747 1.32256 1.21550 1.20045 0.85815 0.95617 1.04286 1.21365 0.90508 0.95845 1.03993 0.85863 1.21024 0.88515 0.80944 0.79585 1.90694 1.47899 1.68867 1.37392 1.45981 1.21148 1.21689 1.46590 1.19320 0.80076 0.92285 0.93905 0.93272 1.21270 0.99661 0.88959 1.49814 0.88984 1.25953 0.94287 1.04614 0.94070 1.70528 1.02476 1.35554 1.42234 0.85166 0.79038 0.77739 0.77743 1.17954 1.20401 1.20745 1.23299 0.86751 0.73624 0.80581 1.92988 1.91417 1.95410 1.38687 1.93378 1.50282 1.75870 1.93753 1.93056 1.95846 1.37117 1.93958 1.21688 0.99227 0.94167 0.99979 1.22231 0.79757 0.93873 1.05404 0.91154 0.92320 0.89040 0.77335 0.89692 0.87468 0.74986 0.92214 0.88019 0.91222 0.87302 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.00 10.42 71.24 0.74 -0.25 16 2 C -0.04 -0.90 7.10 41.41 0.29 -0.61 16 3 C -0.04 -0.81 11.55 83.22 0.96 0.15 16 4 N -0.45 -9.09 3.13 -513.81 -1.61 -10.70 16 5 C 0.20 5.08 7.65 138.24 1.06 6.14 16 6 N -0.52 -15.39 11.24 -175.68 -1.98 -17.36 16 7 C -0.02 -0.45 5.47 30.09 0.16 -0.29 16 8 C -0.10 -2.29 2.55 -11.36 -0.03 -2.32 16 9 H 0.12 2.47 8.12 -2.39 -0.02 2.45 16 10 C 0.51 17.93 6.67 87.66 0.58 18.52 16 11 O -0.57 -24.57 14.40 -3.02 -0.04 -24.61 16 12 N -0.70 -26.52 4.89 -446.08 -2.18 -28.70 16 13 C 0.25 12.12 2.21 44.25 0.10 12.22 16 14 H 0.05 2.74 7.58 -2.39 -0.02 2.72 16 15 C -0.56 -27.65 8.46 25.60 0.22 -27.43 16 16 H 0.09 4.20 7.74 -2.91 -0.02 4.18 16 17 C 0.02 0.82 5.20 84.65 0.44 1.26 16 18 N -0.87 -47.79 9.50 21.45 0.20 -47.59 16 19 Si 0.98 40.30 29.54 68.60 2.03 42.32 16 20 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 21 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 23 C 0.41 20.75 2.81 71.98 0.20 20.95 16 24 F -0.20 -9.64 16.94 44.97 0.76 -8.88 16 25 F -0.15 -8.39 12.91 44.97 0.58 -7.81 16 26 F -0.22 -10.71 15.68 44.97 0.71 -10.01 16 27 C -0.11 -2.28 4.67 30.73 0.14 -2.14 16 28 C 0.11 1.50 6.98 86.48 0.60 2.10 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.21 2.02 8.06 -2.91 -0.02 2.00 16 33 H 0.08 2.27 8.11 -2.39 -0.02 2.25 16 34 H 0.11 2.48 7.95 -2.39 -0.02 2.46 16 35 H 0.41 13.15 8.26 -92.71 -0.77 12.38 16 36 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 37 H 0.10 2.12 7.79 -2.39 -0.02 2.11 16 38 H 0.07 1.60 8.12 -2.39 -0.02 1.59 16 39 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -69.57 342.03 4.27 -65.29 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.33 Total: 19.74 kcal Atomic # 6 Polarization: 22.82 SS G_CDS: 5.48 Total: 28.30 kcal Atomic # 7 Polarization: -98.79 SS G_CDS: -5.56 Total: -104.35 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.04 Total: -24.61 kcal Atomic # 9 Polarization: -28.75 SS G_CDS: 2.05 Total: -26.70 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Total: -69.57 4.27 -65.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928800270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.082 kcal (2) G-P(sol) polarization free energy of solvation -69.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds