Wall clock time and date at job start Tue Mar 31 2020 16:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47215 * 2 1 4 4 C 1.52999 * 109.46897 * 240.00474 * 2 1 3 5 5 C 1.50696 * 109.47179 * 120.00495 * 2 1 3 6 6 N 1.31870 * 118.95455 * 59.99816 * 5 2 1 7 7 C 1.32145 * 120.96865 * 179.97438 * 6 5 2 8 8 C 1.39952 * 118.92513 * 0.02562 * 7 6 5 9 9 C 1.47831 * 120.93968 * 180.02562 * 8 7 6 10 10 O 1.21553 * 119.99846 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99877 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99785 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46900 * 35.00244 * 12 11 9 14 14 C 1.50702 * 109.46883 * 154.99927 * 12 11 9 15 15 H 1.07996 * 120.00357 * 5.39531 * 14 12 11 16 16 C 1.37880 * 120.00026 * 185.39519 * 14 12 11 17 17 N 1.31517 * 119.99969 * 20.75599 * 16 14 12 18 18 Si 1.86799 * 120.00115 * 201.03589 * 16 14 12 19 19 H 1.48496 * 109.47019 * 179.72120 * 18 16 14 20 20 H 1.48500 * 109.46688 * 299.72181 * 18 16 14 21 21 H 1.48499 * 109.47269 * 59.71969 * 18 16 14 22 22 C 1.53001 * 109.47239 * 274.99972 * 12 11 9 23 23 F 1.39898 * 109.46779 * 294.82840 * 22 12 11 24 24 F 1.39903 * 109.47195 * 54.83147 * 22 12 11 25 25 F 1.39896 * 109.47060 * 174.83012 * 22 12 11 26 26 C 1.39950 * 118.11723 * 0.26885 * 8 7 6 27 27 N 1.31871 * 118.95171 * 240.01868 * 5 2 1 28 28 H 1.09000 * 109.47125 * 299.99764 * 1 2 3 29 29 H 1.08998 * 109.47515 * 59.99266 * 1 2 3 30 30 H 1.08996 * 109.47323 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47354 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47340 * 300.00226 * 3 2 1 33 33 H 1.09003 * 109.47226 * 60.00476 * 3 2 1 34 34 H 1.09005 * 109.47165 * 300.00049 * 4 2 1 35 35 H 1.09000 * 109.47328 * 59.99976 * 4 2 1 36 36 H 1.09003 * 109.47420 * 180.02562 * 4 2 1 37 37 H 1.07998 * 120.53741 * 179.97438 * 7 6 5 38 38 H 0.96998 * 120.00041 * 359.97438 * 11 9 8 39 39 H 0.97006 * 119.99981 * 355.81413 * 17 16 14 40 40 H 1.08004 * 120.53438 * 179.70822 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 7 1.7011 -1.9730 1.4184 7 6 2.1199 -2.6345 2.4830 8 6 2.9256 -1.9734 3.4171 9 6 3.4193 -2.6707 4.6235 10 8 3.1260 -3.8346 4.8155 11 7 4.1946 -2.0159 5.5104 12 6 4.6834 -2.7068 6.7062 13 1 4.8888 -3.7497 6.4648 14 6 5.9485 -2.0440 7.1874 15 1 6.3011 -1.1421 6.7094 16 6 6.6558 -2.5892 8.2379 17 7 6.4912 -3.8549 8.5550 18 14 7.8419 -1.5280 9.2159 19 1 8.4672 -2.3435 10.2878 20 1 8.8978 -1.0045 8.3124 21 1 7.1037 -0.3924 9.8247 22 6 3.6213 -2.6373 7.8053 23 9 3.4430 -1.3064 8.1978 24 9 2.4124 -3.1460 7.3185 25 9 4.0375 -3.3959 8.9046 26 6 3.2464 -0.6321 3.1793 27 7 2.7887 -0.0498 2.0849 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6765 -1.7489 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1299 -0.7216 -1.2492 37 1 1.8441 -3.6682 2.6303 38 1 4.4290 -1.0873 5.3570 39 1 5.8285 -4.3892 8.0898 40 1 3.8617 -0.0831 3.8768 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928801615.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:31 Heat of formation + Delta-G solvation = -154.868948 kcal Electronic energy + Delta-G solvation = -29044.244098 eV Core-core repulsion = 24443.840959 eV Total energy + Delta-G solvation = -4600.403139 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.88585 -46.42724 -46.34564 -41.47252 -39.16395 -36.86656 -35.17328 -34.00387 -32.91598 -31.63537 -28.35984 -27.56684 -27.53401 -25.23381 -24.58399 -24.41656 -22.12149 -20.79777 -19.98702 -18.52303 -17.85948 -17.32326 -17.27978 -17.06386 -16.57642 -16.14229 -15.44755 -15.01074 -14.64788 -14.35859 -14.14341 -13.96134 -13.79166 -13.64901 -13.45179 -13.32183 -13.07498 -12.85721 -12.70623 -12.55785 -12.48918 -12.43321 -12.40964 -11.99080 -11.87058 -11.48613 -11.27877 -11.25528 -11.18211 -11.15003 -10.98635 -10.87584 -10.26515 -9.72636 -9.62275 -9.58835 -9.39373 -8.66495 -8.53804 -6.84404 -4.62296 0.35631 0.90820 2.94750 3.24882 3.31546 3.34231 3.49704 3.54699 3.71498 3.90054 4.08218 4.23695 4.36065 4.63834 4.68736 4.70724 4.75143 4.82408 4.95222 5.14979 5.34608 5.38199 5.39035 5.46203 5.56612 5.57002 5.61322 5.64346 5.68342 5.74409 5.86880 6.02937 6.17294 6.17945 6.46656 6.73793 6.75835 7.15065 7.84170 7.90319 7.99223 8.33763 8.45054 9.08695 10.52396 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.020693 B = 0.003140 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.820023 B = 8915.743100 C = 9455.848497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.002 4.002 3 C -0.129 4.129 4 C -0.136 4.136 5 C 0.339 3.661 6 N -0.516 5.516 7 C 0.207 3.793 8 C -0.236 4.236 9 C 0.560 3.440 10 O -0.526 6.526 11 N -0.697 5.697 12 C 0.235 3.765 13 H 0.083 0.917 14 C -0.640 4.640 15 H 0.075 0.925 16 C 0.041 3.959 17 N -0.853 5.853 18 Si 1.072 2.928 19 H -0.278 1.278 20 H -0.283 1.283 21 H -0.280 1.280 22 C 0.414 3.586 23 F -0.193 7.193 24 F -0.206 7.206 25 F -0.176 7.176 26 C 0.183 3.817 27 N -0.514 5.514 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.182 0.818 38 H 0.400 0.600 39 H 0.279 0.721 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.709 8.329 -14.513 18.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.004 4.004 3 C -0.187 4.187 4 C -0.194 4.194 5 C 0.072 3.928 6 N -0.229 5.229 7 C 0.040 3.960 8 C -0.243 4.243 9 C 0.344 3.656 10 O -0.403 6.403 11 N -0.346 5.346 12 C 0.128 3.872 13 H 0.100 0.900 14 C -0.676 4.676 15 H 0.093 0.907 16 C -0.172 4.172 17 N -0.483 5.483 18 Si 0.898 3.102 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.206 1.206 22 C 0.358 3.642 23 F -0.175 7.175 24 F -0.188 7.188 25 F -0.157 7.157 26 C 0.016 3.984 27 N -0.227 5.227 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.199 0.801 38 H 0.235 0.765 39 H 0.091 0.909 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -7.163 7.872 -13.915 17.519 hybrid contribution -0.914 0.014 -0.081 0.918 sum -8.077 7.886 -13.995 17.981 Atomic orbital electron populations 1.21847 0.92362 1.03065 1.02141 1.19443 0.96388 0.95200 0.89337 1.21729 1.01887 0.93213 1.01843 1.21849 1.01102 1.01058 0.95403 1.23339 0.88190 0.87164 0.94111 1.68284 1.23730 1.09366 1.21483 1.23502 0.86620 1.00177 0.85676 1.21914 1.05060 0.97470 0.99881 1.17855 0.78941 0.86524 0.82285 1.90792 1.57306 1.15988 1.76195 1.45825 1.50395 1.15766 1.22598 1.19812 0.90284 0.98240 0.78825 0.90003 1.21651 1.08524 1.15328 1.22111 0.90698 1.26026 0.99554 0.96314 0.95348 1.70765 1.29818 1.05043 1.42650 0.83490 0.75249 0.75077 0.76394 1.20305 1.20935 1.20619 1.23054 0.82479 0.72807 0.85819 1.93034 1.95815 1.36381 1.92281 1.93096 1.50274 1.87517 1.87940 1.93152 1.89819 1.76035 1.56722 1.23555 0.91670 0.90646 0.92501 1.68294 1.11792 1.39047 1.03549 0.92674 0.91472 0.91325 0.91843 0.92301 0.91864 0.91330 0.91478 0.92654 0.80100 0.76465 0.90913 0.80933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.37 37.16 0.31 -0.85 16 2 C 0.00 -0.02 0.92 -155.66 -0.14 -0.16 16 3 C -0.13 -1.12 7.66 37.16 0.28 -0.84 16 4 C -0.14 -1.16 8.37 37.16 0.31 -0.85 16 5 C 0.34 4.28 6.25 -157.07 -0.98 3.29 16 6 N -0.52 -6.89 9.77 -10.39 -0.10 -6.99 16 7 C 0.21 2.92 10.88 -16.78 -0.18 2.74 16 8 C -0.24 -3.54 5.91 -104.69 -0.62 -4.16 16 9 C 0.56 10.42 7.20 -12.33 -0.09 10.34 16 10 O -0.53 -11.46 15.06 5.32 0.08 -11.38 16 11 N -0.70 -13.34 4.98 -55.88 -0.28 -13.62 16 12 C 0.23 5.49 1.92 -69.08 -0.13 5.36 16 13 H 0.08 2.13 6.61 -51.93 -0.34 1.78 16 14 C -0.64 -15.78 8.21 -34.44 -0.28 -16.06 16 15 H 0.07 1.75 7.80 -52.49 -0.41 1.34 16 16 C 0.04 1.04 4.72 -17.82 -0.08 0.96 16 17 N -0.85 -23.56 12.43 55.43 0.69 -22.88 16 18 Si 1.07 22.83 29.95 -169.99 -5.09 17.74 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 22 C 0.41 9.94 2.82 37.16 0.10 10.04 16 23 F -0.19 -4.49 16.87 2.25 0.04 -4.45 16 24 F -0.21 -4.86 15.54 2.25 0.04 -4.82 16 25 F -0.18 -4.54 14.13 2.25 0.03 -4.50 16 26 C 0.18 2.41 10.81 -16.78 -0.18 2.23 16 27 N -0.51 -6.72 8.98 -10.39 -0.09 -6.81 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.63 8.01 -51.93 -0.42 0.21 16 31 H 0.06 0.59 8.04 -51.93 -0.42 0.18 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.59 8.04 -51.93 -0.42 0.17 16 34 H 0.07 0.63 8.01 -51.93 -0.42 0.21 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.18 2.37 7.74 -52.49 -0.41 1.97 16 38 H 0.40 6.49 6.66 -40.82 -0.27 6.21 16 39 H 0.28 7.81 6.04 -40.82 -0.25 7.56 16 40 H 0.17 1.87 6.54 -52.48 -0.34 1.53 16 LS Contribution 347.27 15.07 5.23 5.23 Total: -1.00 -29.62 347.27 -5.74 -35.36 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -4.60 Total: 5.06 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: -1.68 Total: 12.05 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.22 Total: -50.30 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.08 Total: -11.38 kcal Atomic # 9 Polarization: -13.88 SS G_CDS: 0.10 Total: -13.78 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.09 Total: 17.74 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.62 -5.74 -35.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928801615.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.507 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds