Wall clock time and date at job start Tue Mar 31 2020 16:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47215 * 2 1 4 4 C 1.52999 * 109.46897 * 240.00474 * 2 1 3 5 5 C 1.50696 * 109.47179 * 120.00495 * 2 1 3 6 6 N 1.31870 * 118.95455 * 59.99816 * 5 2 1 7 7 C 1.32145 * 120.96865 * 179.97438 * 6 5 2 8 8 C 1.39952 * 118.92513 * 0.02562 * 7 6 5 9 9 C 1.47831 * 120.93968 * 180.02562 * 8 7 6 10 10 O 1.21553 * 119.99846 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99877 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99785 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46900 * 35.00244 * 12 11 9 14 14 C 1.50702 * 109.46883 * 154.99927 * 12 11 9 15 15 H 1.07996 * 120.00357 * 5.39531 * 14 12 11 16 16 C 1.37880 * 120.00026 * 185.39519 * 14 12 11 17 17 N 1.31517 * 119.99969 * 20.75599 * 16 14 12 18 18 Si 1.86799 * 120.00115 * 201.03589 * 16 14 12 19 19 H 1.48496 * 109.47019 * 179.72120 * 18 16 14 20 20 H 1.48500 * 109.46688 * 299.72181 * 18 16 14 21 21 H 1.48499 * 109.47269 * 59.71969 * 18 16 14 22 22 C 1.53001 * 109.47239 * 274.99972 * 12 11 9 23 23 F 1.39898 * 109.46779 * 294.82840 * 22 12 11 24 24 F 1.39903 * 109.47195 * 54.83147 * 22 12 11 25 25 F 1.39896 * 109.47060 * 174.83012 * 22 12 11 26 26 C 1.39950 * 118.11723 * 0.26885 * 8 7 6 27 27 N 1.31871 * 118.95171 * 240.01868 * 5 2 1 28 28 H 1.09000 * 109.47125 * 299.99764 * 1 2 3 29 29 H 1.08998 * 109.47515 * 59.99266 * 1 2 3 30 30 H 1.08996 * 109.47323 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47354 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47340 * 300.00226 * 3 2 1 33 33 H 1.09003 * 109.47226 * 60.00476 * 3 2 1 34 34 H 1.09005 * 109.47165 * 300.00049 * 4 2 1 35 35 H 1.09000 * 109.47328 * 59.99976 * 4 2 1 36 36 H 1.09003 * 109.47420 * 180.02562 * 4 2 1 37 37 H 1.07998 * 120.53741 * 179.97438 * 7 6 5 38 38 H 0.96998 * 120.00041 * 359.97438 * 11 9 8 39 39 H 0.97006 * 119.99981 * 355.81413 * 17 16 14 40 40 H 1.08004 * 120.53438 * 179.70822 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 7 1.7011 -1.9730 1.4184 7 6 2.1199 -2.6345 2.4830 8 6 2.9256 -1.9734 3.4171 9 6 3.4193 -2.6707 4.6235 10 8 3.1260 -3.8346 4.8155 11 7 4.1946 -2.0159 5.5104 12 6 4.6834 -2.7068 6.7062 13 1 4.8888 -3.7497 6.4648 14 6 5.9485 -2.0440 7.1874 15 1 6.3011 -1.1421 6.7094 16 6 6.6558 -2.5892 8.2379 17 7 6.4912 -3.8549 8.5550 18 14 7.8419 -1.5280 9.2159 19 1 8.4672 -2.3435 10.2878 20 1 8.8978 -1.0045 8.3124 21 1 7.1037 -0.3924 9.8247 22 6 3.6213 -2.6373 7.8053 23 9 3.4430 -1.3064 8.1978 24 9 2.4124 -3.1460 7.3185 25 9 4.0375 -3.3959 8.9046 26 6 3.2464 -0.6321 3.1793 27 7 2.7887 -0.0498 2.0849 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6765 -1.7489 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1299 -0.7216 -1.2492 37 1 1.8441 -3.6682 2.6303 38 1 4.4290 -1.0873 5.3570 39 1 5.8285 -4.3892 8.0898 40 1 3.8617 -0.0831 3.8768 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928801615.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:30 Heat of formation + Delta-G solvation = -172.715433 kcal Electronic energy + Delta-G solvation = -29045.017980 eV Core-core repulsion = 24443.840959 eV Total energy + Delta-G solvation = -4601.177021 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.84131 -48.37659 -48.31300 -42.55920 -40.65336 -37.71309 -36.91802 -35.18127 -34.60451 -32.87367 -30.08735 -28.27184 -28.19444 -26.55022 -26.40151 -25.48941 -23.85610 -22.25626 -20.98248 -20.17668 -19.38864 -19.07004 -18.97749 -18.83114 -17.91344 -17.47216 -16.70814 -16.44674 -15.72477 -15.67322 -15.54828 -15.40270 -15.25367 -15.00079 -14.82687 -14.80399 -14.66351 -14.60034 -14.56045 -14.52028 -14.36189 -13.36596 -13.25652 -13.12496 -13.04503 -12.84909 -12.56289 -12.55257 -12.17185 -12.07237 -11.95409 -11.92444 -11.86449 -11.45310 -11.20293 -10.76824 -10.49971 -10.44577 -10.33373 -8.86376 -6.64442 -0.77554 -0.16628 1.52458 1.57711 1.66182 1.80019 1.85197 2.16227 2.48783 2.58258 2.60618 2.87671 2.89220 3.24693 3.36126 3.43788 3.54618 3.62625 3.79441 3.84062 3.98242 3.98994 4.32481 4.53608 4.56552 4.77958 4.78942 4.88254 4.92958 4.99551 5.02043 5.08311 5.13548 5.28443 5.30594 5.35962 5.49656 5.68874 5.98634 6.26111 6.40084 6.81048 6.94146 7.15939 8.49306 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.020693 B = 0.003140 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.820023 B = 8915.743100 C = 9455.848497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.006 4.006 3 C -0.124 4.124 4 C -0.132 4.132 5 C 0.337 3.663 6 N -0.520 5.520 7 C 0.208 3.792 8 C -0.250 4.250 9 C 0.563 3.437 10 O -0.563 6.563 11 N -0.691 5.691 12 C 0.240 3.760 13 H 0.051 0.949 14 C -0.642 4.642 15 H 0.090 0.910 16 C -0.004 4.004 17 N -0.883 5.883 18 Si 1.114 2.886 19 H -0.287 1.287 20 H -0.259 1.259 21 H -0.268 1.268 22 C 0.415 3.585 23 F -0.186 7.186 24 F -0.205 7.205 25 F -0.188 7.188 26 C 0.194 3.806 27 N -0.517 5.517 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.047 0.953 37 H 0.185 0.815 38 H 0.415 0.585 39 H 0.264 0.736 40 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.804 10.858 -16.123 20.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.008 4.008 3 C -0.182 4.182 4 C -0.190 4.190 5 C 0.071 3.929 6 N -0.233 5.233 7 C 0.041 3.959 8 C -0.258 4.258 9 C 0.350 3.650 10 O -0.443 6.443 11 N -0.342 5.342 12 C 0.132 3.868 13 H 0.069 0.931 14 C -0.677 4.677 15 H 0.108 0.892 16 C -0.211 4.211 17 N -0.514 5.514 18 Si 0.934 3.066 19 H -0.213 1.213 20 H -0.183 1.183 21 H -0.193 1.193 22 C 0.359 3.641 23 F -0.168 7.168 24 F -0.187 7.187 25 F -0.170 7.170 26 C 0.027 3.973 27 N -0.230 5.230 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.067 0.933 37 H 0.202 0.798 38 H 0.253 0.747 39 H 0.075 0.925 40 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -7.272 10.441 -15.572 20.109 hybrid contribution -0.973 -0.749 0.308 1.266 sum -8.245 9.692 -15.264 19.872 Atomic orbital electron populations 1.21837 0.91311 1.02789 1.03089 1.19695 0.97161 0.95618 0.88343 1.21706 1.01337 0.92482 1.02679 1.21838 1.00641 1.00758 0.95778 1.24128 0.87022 0.87007 0.94707 1.68397 1.24001 1.09832 1.21062 1.23622 0.86100 1.00487 0.85650 1.21559 1.06970 0.98332 0.98949 1.18285 0.77920 0.86087 0.82746 1.90771 1.58589 1.17758 1.77154 1.45648 1.50587 1.16389 1.21541 1.19437 0.90277 0.97023 0.80071 0.93131 1.21958 1.08578 1.15436 1.21749 0.89181 1.27386 1.01008 0.96426 0.96280 1.70881 1.30667 1.06222 1.43670 0.82976 0.74290 0.73871 0.75443 1.21271 1.18326 1.19297 1.23047 0.82646 0.72886 0.85565 1.93038 1.95798 1.35748 1.92228 1.93096 1.50142 1.87555 1.87869 1.93128 1.89994 1.76465 1.57421 1.23896 0.90907 0.89819 0.92690 1.68441 1.12168 1.38842 1.03578 0.93387 0.88881 0.92218 0.92646 0.89838 0.92679 0.92217 0.88895 0.93346 0.79812 0.74658 0.92538 0.78701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.37 71.98 0.60 -1.33 16 2 C -0.01 -0.10 0.92 -52.93 -0.05 -0.15 16 3 C -0.12 -1.82 7.66 71.98 0.55 -1.27 16 4 C -0.13 -1.93 8.37 71.98 0.60 -1.33 16 5 C 0.34 7.98 6.25 138.70 0.87 8.84 16 6 N -0.52 -13.38 9.77 -186.80 -1.82 -15.20 16 7 C 0.21 5.79 10.88 85.06 0.93 6.72 16 8 C -0.25 -7.36 5.91 -19.91 -0.12 -7.48 16 9 C 0.56 21.03 7.20 86.78 0.63 21.66 16 10 O -0.56 -25.18 15.06 -3.88 -0.06 -25.24 16 11 N -0.69 -26.18 4.98 -448.99 -2.24 -28.42 16 12 C 0.24 11.32 1.92 44.25 0.09 11.41 16 13 H 0.05 2.74 6.61 -2.39 -0.02 2.73 16 14 C -0.64 -31.20 8.21 25.60 0.21 -30.99 16 15 H 0.09 4.03 7.80 -2.91 -0.02 4.01 16 16 C 0.00 -0.22 4.72 84.65 0.40 0.18 16 17 N -0.88 -49.71 12.43 21.45 0.27 -49.44 16 18 Si 1.11 44.83 29.95 68.60 2.05 46.89 16 19 H -0.29 -11.91 7.11 99.48 0.71 -11.21 16 20 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 21 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 22 C 0.41 20.01 2.82 71.98 0.20 20.21 16 23 F -0.19 -8.49 16.87 44.97 0.76 -7.73 16 24 F -0.20 -9.74 15.54 44.97 0.70 -9.04 16 25 F -0.19 -9.92 14.13 44.97 0.64 -9.29 16 26 C 0.19 4.79 10.81 85.06 0.92 5.71 16 27 N -0.52 -12.59 8.98 -186.80 -1.68 -14.27 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.99 8.01 -2.39 -0.02 0.97 16 31 H 0.05 0.91 8.04 -2.38 -0.02 0.89 16 32 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.05 0.90 8.04 -2.39 -0.02 0.88 16 34 H 0.06 0.98 8.01 -2.38 -0.02 0.96 16 35 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.18 4.88 7.74 -2.91 -0.02 4.86 16 38 H 0.42 12.84 6.66 -92.71 -0.62 12.22 16 39 H 0.26 15.35 6.04 -92.70 -0.56 14.79 16 40 H 0.20 3.76 6.54 -2.91 -0.02 3.74 16 Total: -1.00 -63.94 347.27 5.13 -58.81 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.69 Total: 20.76 kcal Atomic # 6 Polarization: 26.35 SS G_CDS: 5.82 Total: 32.18 kcal Atomic # 7 Polarization: -101.86 SS G_CDS: -5.47 Total: -107.33 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.06 Total: -25.24 kcal Atomic # 9 Polarization: -28.16 SS G_CDS: 2.09 Total: -26.06 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.05 Total: 46.89 kcal Total: -63.94 5.13 -58.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928801615.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.904 kcal (2) G-P(sol) polarization free energy of solvation -63.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds