Wall clock time and date at job start Tue Mar 31 2020 16:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30787 * 125.72410 * 2 1 4 4 C 1.34423 * 109.32324 * 179.97438 * 3 2 1 5 5 C 1.33861 * 107.79770 * 359.97438 * 4 3 2 6 6 N 1.34400 * 125.72240 * 179.69185 * 2 1 3 7 7 C 1.46473 * 128.44686 * 0.17773 * 6 2 1 8 8 C 1.53276 * 108.69540 * 162.67450 * 7 6 2 9 9 H 1.09002 * 109.43556 * 290.74080 * 8 7 6 10 10 C 1.50700 * 109.43515 * 170.83651 * 8 7 6 11 11 O 1.21283 * 119.99594 * 0.02562 * 10 8 7 12 12 N 1.34779 * 120.00273 * 179.97438 * 10 8 7 13 13 C 1.46499 * 119.99838 * 180.02562 * 12 10 8 14 14 H 1.09003 * 109.47111 * 325.00520 * 13 12 10 15 15 C 1.50697 * 109.47015 * 205.00411 * 13 12 10 16 16 H 1.08004 * 120.00210 * 359.97438 * 15 13 12 17 17 C 1.37883 * 120.00132 * 180.02562 * 15 13 12 18 18 N 1.31514 * 119.99964 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99801 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47098 * 90.00261 * 19 17 15 21 21 H 1.48501 * 109.46828 * 209.99704 * 19 17 15 22 22 H 1.48503 * 109.47365 * 329.99811 * 19 17 15 23 23 C 1.52997 * 109.47328 * 85.00293 * 13 12 10 24 24 F 1.39904 * 109.46785 * 59.99816 * 23 13 12 25 25 F 1.39897 * 109.47237 * 179.97438 * 23 13 12 26 26 F 1.39903 * 109.46883 * 300.00019 * 23 13 12 27 27 C 1.53123 * 109.70698 * 50.76769 * 8 7 6 28 28 C 1.50711 * 128.68401 * 180.14119 * 5 4 3 29 29 H 1.09002 * 109.47152 * 90.02589 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.02689 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.02670 * 1 2 3 32 32 H 1.07998 * 126.10562 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.59947 * 282.44132 * 7 6 2 34 34 H 1.09001 * 109.59822 * 42.75095 * 7 6 2 35 35 H 0.96996 * 119.99600 * 0.02562 * 12 10 8 36 36 H 0.96997 * 120.00263 * 179.97438 * 18 17 15 37 37 H 1.08998 * 109.49309 * 50.03035 * 27 8 7 38 38 H 1.09000 * 109.49966 * 170.10114 * 27 8 7 39 39 H 1.09001 * 109.74056 * 283.85852 * 28 5 4 40 40 H 1.08998 * 109.74628 * 44.57357 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2707 1.0618 0.0000 4 6 3.5602 0.6822 0.0006 5 6 3.5928 -0.6560 0.0015 6 7 2.2917 -1.0911 0.0059 7 6 1.8922 -2.5003 0.0099 8 6 3.0927 -3.3526 -0.4164 9 1 3.3050 -3.1782 -1.4713 10 6 2.7738 -4.8100 -0.2035 11 8 1.6945 -5.1355 0.2439 12 7 3.6876 -5.7518 -0.5112 13 6 3.3773 -7.1685 -0.3047 14 1 2.7556 -7.2786 0.5839 15 6 4.6578 -7.9415 -0.1208 16 1 5.6078 -7.4288 -0.1549 17 6 4.6167 -9.3036 0.0898 18 7 3.4600 -9.9280 0.1307 19 14 6.2040 -10.2618 0.3170 20 1 6.5570 -10.3001 1.7589 21 1 6.0218 -11.6475 -0.1849 22 1 7.2950 -9.5997 -0.4424 23 6 2.6258 -7.7089 -1.5229 24 9 3.4237 -7.5676 -2.6634 25 9 2.3300 -9.0620 -1.3260 26 9 1.4371 -6.9912 -1.6936 27 6 4.3185 -2.9722 0.4186 28 6 4.7919 -1.5690 0.0053 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 0.8902 0.5134 31 1 -0.3633 -0.8898 0.5143 32 1 4.4171 1.3396 0.0011 33 1 1.5771 -2.7881 1.0129 34 1 1.0687 -2.6488 -0.6887 35 1 4.5506 -5.4914 -0.8694 36 1 3.4310 -10.8862 0.2785 37 1 4.0540 -2.9767 1.4760 38 1 5.1177 -3.6916 0.2403 39 1 5.2364 -1.5972 -0.9896 40 1 5.5257 -1.2102 0.7271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928803870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:45 Heat of formation + Delta-G solvation = -142.355121 kcal Electronic energy + Delta-G solvation = -29541.006254 eV Core-core repulsion = 24941.145755 eV Total energy + Delta-G solvation = -4599.860499 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.42659 -48.06296 -47.73727 -43.37707 -40.95371 -37.39578 -36.53837 -34.58304 -34.21488 -32.36009 -31.00330 -30.03199 -27.34698 -26.63146 -25.70652 -23.74305 -23.10488 -21.95711 -21.28302 -19.97034 -19.34946 -18.88228 -18.68556 -18.33048 -17.79060 -17.31169 -16.90186 -16.72313 -16.17629 -15.85286 -15.37604 -14.99715 -14.98737 -14.95044 -14.70317 -14.58398 -14.47698 -14.34828 -14.27919 -14.03968 -13.93448 -13.87531 -13.75051 -13.23105 -13.07626 -12.89795 -12.83458 -12.71725 -12.62121 -12.22728 -12.14318 -11.96780 -11.60036 -10.93724 -10.87949 -10.68552 -10.51492 -10.10805 -9.11893 -8.22042 -6.52526 1.07986 1.46453 1.48054 1.53423 1.58898 1.65020 2.13490 2.20492 2.38916 2.53076 2.94123 3.22403 3.48464 3.55988 3.62122 3.76705 3.79949 3.84967 4.00121 4.14398 4.19761 4.27135 4.33814 4.42531 4.58557 4.65377 4.69734 4.85574 4.90237 4.93862 5.00984 5.04864 5.14248 5.35836 5.46945 5.52350 5.64378 5.84925 6.23686 6.52200 6.62944 7.12312 7.15236 7.27540 8.70436 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.020854 B = 0.003365 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.363651 B = 8318.972985 C = 9138.279730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.192 3.808 3 N -0.528 5.528 4 C -0.044 4.044 5 C -0.031 4.031 6 N -0.453 5.453 7 C 0.128 3.872 8 C -0.105 4.105 9 H 0.124 0.876 10 C 0.515 3.485 11 O -0.574 6.574 12 N -0.699 5.699 13 C 0.252 3.748 14 H 0.050 0.950 15 C -0.559 4.559 16 H 0.096 0.904 17 C 0.016 3.984 18 N -0.875 5.875 19 Si 0.980 3.020 20 H -0.271 1.271 21 H -0.288 1.288 22 H -0.257 1.257 23 C 0.412 3.588 24 F -0.203 7.203 25 F -0.152 7.152 26 F -0.219 7.219 27 C -0.113 4.113 28 C -0.035 4.035 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.187 0.813 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.416 0.584 36 H 0.268 0.732 37 H 0.066 0.934 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.138 14.187 -1.159 14.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.070 4.070 3 N -0.249 5.249 4 C -0.190 4.190 5 C -0.146 4.146 6 N -0.136 5.136 7 C 0.005 3.995 8 C -0.127 4.127 9 H 0.142 0.858 10 C 0.301 3.699 11 O -0.453 6.453 12 N -0.349 5.349 13 C 0.145 3.855 14 H 0.067 0.933 15 C -0.596 4.596 16 H 0.114 0.886 17 C -0.190 4.190 18 N -0.509 5.509 19 Si 0.804 3.196 20 H -0.196 1.196 21 H -0.214 1.214 22 H -0.180 1.180 23 C 0.356 3.644 24 F -0.185 7.185 25 F -0.133 7.133 26 F -0.201 7.201 27 C -0.151 4.151 28 C -0.073 4.073 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.100 0.900 32 H 0.204 0.796 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.253 0.747 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.907 14.423 -0.834 14.572 hybrid contribution 0.606 -1.694 -0.319 1.827 sum 2.513 12.729 -1.153 13.026 Atomic orbital electron populations 1.20296 0.83227 1.04701 1.04422 1.23677 0.96885 0.81045 1.05348 1.70421 1.03109 1.29028 1.22308 1.22212 0.94894 0.92778 1.09157 1.21665 0.86264 0.95774 1.10849 1.45379 1.06832 1.07065 1.54370 1.21619 0.97376 0.76339 1.04158 1.21492 0.97353 0.89293 1.04532 0.85802 1.20851 0.83751 0.88433 0.76834 1.90714 1.24815 1.83565 1.46196 1.45867 1.18870 1.05263 1.64916 1.19335 0.97308 0.79373 0.89503 0.93259 1.21232 0.91659 0.93106 1.53612 0.88633 1.25971 1.00454 0.98766 0.93779 1.70523 1.25972 1.10612 1.43763 0.85203 0.78504 0.77193 0.78729 1.19621 1.21391 1.18044 1.23364 0.76773 0.77547 0.86744 1.92993 1.74396 1.95827 1.55250 1.93380 1.93432 1.32249 1.94233 1.93060 1.51535 1.79100 1.96412 1.21762 0.95684 0.98454 0.99211 1.20381 0.92098 0.89999 1.04773 0.89127 0.88629 0.89958 0.79559 0.89496 0.88280 0.74694 0.92238 0.91488 0.87992 0.87579 0.87008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.22 10.24 71.24 0.73 -0.49 16 2 C 0.19 4.81 7.94 138.25 1.10 5.90 16 3 N -0.53 -14.77 11.27 -188.78 -2.13 -16.90 16 4 C -0.04 -1.04 11.84 83.30 0.99 -0.05 16 5 C -0.03 -0.68 6.57 40.73 0.27 -0.41 16 6 N -0.45 -10.74 3.13 -500.12 -1.57 -12.31 16 7 C 0.13 3.02 5.31 86.48 0.46 3.48 16 8 C -0.11 -2.40 2.51 -11.41 -0.03 -2.43 16 9 H 0.12 2.45 8.11 -2.39 -0.02 2.43 16 10 C 0.51 17.16 6.69 87.66 0.59 17.75 16 11 O -0.57 -24.07 14.41 -3.04 -0.04 -24.12 16 12 N -0.70 -24.59 4.80 -446.10 -2.14 -26.73 16 13 C 0.25 11.67 2.21 44.24 0.10 11.77 16 14 H 0.05 2.66 7.58 -2.39 -0.02 2.64 16 15 C -0.56 -26.29 8.46 25.60 0.22 -26.07 16 16 H 0.10 4.05 7.74 -2.91 -0.02 4.03 16 17 C 0.02 0.77 5.20 84.66 0.44 1.21 16 18 N -0.87 -46.73 9.50 21.45 0.20 -46.52 16 19 Si 0.98 38.60 29.54 68.60 2.03 40.63 16 20 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 21 H -0.29 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 23 C 0.41 20.15 2.81 71.98 0.20 20.35 16 24 F -0.20 -9.35 16.94 44.97 0.76 -8.59 16 25 F -0.15 -8.25 12.91 44.97 0.58 -7.66 16 26 F -0.22 -10.61 15.68 44.97 0.70 -9.91 16 27 C -0.11 -2.04 5.25 30.89 0.16 -1.87 16 28 C -0.03 -0.50 6.31 30.10 0.19 -0.31 16 29 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 1.32 7.95 -2.38 -0.02 1.30 16 32 H 0.19 3.36 8.06 -2.91 -0.02 3.33 16 33 H 0.09 2.25 7.82 -2.39 -0.02 2.23 16 34 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.42 11.79 7.86 -92.71 -0.73 11.07 16 36 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 37 H 0.07 1.36 8.12 -2.39 -0.02 1.35 16 38 H 0.10 1.58 7.30 -2.39 -0.02 1.56 16 39 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -66.34 340.38 4.17 -62.17 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.37 Total: 21.10 kcal Atomic # 6 Polarization: 23.43 SS G_CDS: 5.41 Total: 28.84 kcal Atomic # 7 Polarization: -96.83 SS G_CDS: -5.63 Total: -102.46 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.04 Total: -24.12 kcal Atomic # 9 Polarization: -28.21 SS G_CDS: 2.05 Total: -26.16 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -66.34 4.17 -62.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928803870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.181 kcal (2) G-P(sol) polarization free energy of solvation -66.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds