Wall clock time and date at job start Tue Mar 31 2020 16:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30783 * 125.72060 * 2 1 4 4 C 1.34437 * 109.31818 * 180.02562 * 3 2 1 5 5 C 1.33856 * 107.79500 * 0.02562 * 4 3 2 6 6 N 1.34405 * 125.72107 * 180.02562 * 2 1 3 7 7 C 1.46463 * 128.44557 * 359.86424 * 6 2 1 8 8 C 1.53282 * 108.69853 * 197.28493 * 7 6 2 9 9 H 1.08998 * 109.42970 * 69.28735 * 8 7 6 10 10 C 1.50710 * 109.43124 * 189.18379 * 8 7 6 11 11 O 1.21280 * 119.99533 * 0.02562 * 10 8 7 12 12 N 1.34771 * 119.99719 * 179.97438 * 10 8 7 13 13 C 1.46505 * 119.99711 * 180.02562 * 12 10 8 14 14 H 1.08995 * 109.46834 * 35.00229 * 13 12 10 15 15 C 1.50701 * 109.46836 * 155.00410 * 13 12 10 16 16 H 1.07996 * 119.99699 * 85.12927 * 15 13 12 17 17 C 1.37875 * 119.99901 * 265.39811 * 15 13 12 18 18 N 1.31518 * 119.99799 * 184.72563 * 17 15 13 19 19 Si 1.86799 * 119.99896 * 4.72661 * 17 15 13 20 20 H 1.48497 * 109.47199 * 84.72889 * 19 17 15 21 21 H 1.48507 * 109.46941 * 204.72844 * 19 17 15 22 22 H 1.48497 * 109.47361 * 324.72646 * 19 17 15 23 23 C 1.52995 * 109.46898 * 275.00314 * 13 12 10 24 24 F 1.39901 * 109.47477 * 305.03443 * 23 13 12 25 25 F 1.39898 * 109.47495 * 65.03693 * 23 13 12 26 26 F 1.39899 * 109.47094 * 185.03621 * 23 13 12 27 27 C 1.53108 * 109.71586 * 309.25870 * 8 7 6 28 28 C 1.50709 * 128.67776 * 179.85481 * 5 4 3 29 29 H 1.09007 * 109.47084 * 269.99934 * 1 2 3 30 30 H 1.09006 * 109.47105 * 29.99743 * 1 2 3 31 31 H 1.09000 * 109.47237 * 149.99764 * 1 2 3 32 32 H 1.07992 * 126.09902 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.59840 * 77.52278 * 7 6 2 34 34 H 1.09006 * 109.60521 * 317.05072 * 7 6 2 35 35 H 0.96996 * 120.00271 * 0.02562 * 12 10 8 36 36 H 0.97003 * 119.99596 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.50339 * 189.85082 * 27 8 7 38 38 H 1.08996 * 109.50226 * 309.95902 * 27 8 7 39 39 H 1.09002 * 109.74650 * 315.48233 * 28 5 4 40 40 H 1.08998 * 109.74897 * 76.15013 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5602 0.6822 -0.0006 5 6 3.5928 -0.6560 -0.0015 6 7 2.2917 -1.0912 -0.0005 7 6 1.8921 -2.5003 0.0016 8 6 3.0926 -3.3509 0.4315 9 1 3.3046 -3.1723 1.4856 10 6 2.7737 -4.8092 0.2243 11 8 1.6948 -5.1363 -0.2227 12 7 3.6878 -5.7496 0.5349 13 6 3.3779 -7.1672 0.3330 14 1 2.7563 -7.2802 -0.5551 15 6 4.6587 -7.9404 0.1517 16 1 5.2044 -8.2912 1.0151 17 6 5.1366 -8.1950 -1.1163 18 7 6.2026 -8.9481 -1.2783 19 14 4.2699 -7.4704 -2.6040 20 1 4.7654 -6.0910 -2.8423 21 1 4.5492 -8.3097 -3.7969 22 1 2.8063 -7.4346 -2.3555 23 6 2.6266 -7.7037 1.5531 24 9 3.3752 -7.4548 2.7084 25 9 1.3860 -7.0653 1.6547 26 9 2.4317 -9.0818 1.4117 27 6 4.3186 -2.9739 -0.4046 28 6 4.7918 -1.5690 -0.0054 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8901 -0.5138 31 1 -0.3634 -0.8900 -0.5139 32 1 4.4170 1.3396 -0.0003 33 1 1.5770 -2.7924 -1.0001 34 1 1.0706 -2.6464 0.7030 35 1 4.5507 -5.4878 0.8921 36 1 6.5390 -9.1269 -2.1703 37 1 5.1180 -3.6921 -0.2226 38 1 4.0546 -2.9827 -1.4621 39 1 5.5260 -1.2096 -0.7265 40 1 5.2364 -1.5973 0.9894 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928803871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:49 Heat of formation + Delta-G solvation = -147.219434 kcal Electronic energy + Delta-G solvation = -29645.096029 eV Core-core repulsion = 25045.024598 eV Total energy + Delta-G solvation = -4600.071431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.16258 -46.69342 -46.63423 -42.45170 -39.63358 -36.35877 -35.02155 -33.44627 -32.72922 -31.41162 -30.14279 -28.99937 -26.48016 -25.09399 -24.64356 -22.62193 -21.55091 -20.86173 -19.97829 -19.03046 -18.28710 -17.65022 -17.18027 -16.89802 -16.66475 -16.36142 -15.70482 -15.55149 -14.89654 -14.52857 -14.25457 -14.04892 -13.79293 -13.61539 -13.57645 -13.44952 -13.14924 -13.11182 -13.07901 -12.94249 -12.85537 -12.79995 -12.74606 -12.50054 -12.02995 -11.96253 -11.85925 -11.29064 -11.19486 -11.08922 -10.87720 -10.22330 -9.98072 -9.89922 -9.66782 -9.52249 -9.10248 -8.61885 -8.23215 -6.65199 -4.81216 1.98699 2.62304 2.82032 2.97720 3.07295 3.08888 3.13343 3.45615 3.80256 3.95938 4.21139 4.39112 4.49824 4.51071 4.67088 4.73971 4.93689 5.04337 5.07070 5.07855 5.17323 5.20476 5.29393 5.35608 5.37650 5.45062 5.54718 5.62975 5.68862 5.72522 5.90125 5.96154 6.19080 6.36146 6.71932 6.75753 6.91798 7.15811 7.70097 8.04974 8.07290 8.39680 8.55331 8.89303 10.43094 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.015306 B = 0.004079 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.890643 B = 6862.302266 C = 7695.005795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.206 3.794 3 N -0.497 5.497 4 C -0.026 4.026 5 C -0.026 4.026 6 N -0.449 5.449 7 C 0.124 3.876 8 C -0.122 4.122 9 H 0.106 0.894 10 C 0.508 3.492 11 O -0.542 6.542 12 N -0.708 5.708 13 C 0.193 3.807 14 H 0.100 0.900 15 C -0.536 4.536 16 H 0.094 0.906 17 C 0.101 3.899 18 N -0.856 5.856 19 Si 0.870 3.130 20 H -0.267 1.267 21 H -0.278 1.278 22 H -0.255 1.255 23 C 0.439 3.561 24 F -0.193 7.193 25 F -0.196 7.196 26 F -0.180 7.180 27 C -0.120 4.120 28 C -0.043 4.043 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.168 0.832 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.402 0.598 36 H 0.277 0.723 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.218 12.540 2.142 13.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.056 4.056 3 N -0.216 5.216 4 C -0.173 4.173 5 C -0.140 4.140 6 N -0.133 5.133 7 C 0.001 3.999 8 C -0.144 4.144 9 H 0.125 0.875 10 C 0.292 3.708 11 O -0.420 6.420 12 N -0.359 5.359 13 C 0.090 3.910 14 H 0.118 0.882 15 C -0.573 4.573 16 H 0.112 0.888 17 C -0.110 4.110 18 N -0.488 5.488 19 Si 0.695 3.305 20 H -0.192 1.192 21 H -0.203 1.203 22 H -0.180 1.180 23 C 0.383 3.617 24 F -0.174 7.174 25 F -0.178 7.178 26 F -0.162 7.162 27 C -0.158 4.158 28 C -0.081 4.081 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.185 0.815 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.238 0.762 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.209 12.830 1.712 13.953 hybrid contribution 0.320 -0.518 -0.342 0.698 sum -4.889 12.313 1.370 13.318 Atomic orbital electron populations 1.20175 0.85060 1.03978 1.03455 1.23082 0.95596 0.81172 1.05744 1.70433 1.02004 1.28065 1.21146 1.21781 0.94783 0.91915 1.08854 1.21178 0.85739 0.95437 1.11682 1.45316 1.06399 1.07307 1.54256 1.21730 0.97337 0.76290 1.04537 1.21623 0.96322 0.93413 1.03011 0.87546 1.20402 0.84938 0.87105 0.78320 1.90701 1.23360 1.82774 1.45126 1.47555 1.17684 1.06597 1.64108 1.20309 0.98882 0.80427 0.91397 0.88237 1.20727 1.05859 1.35068 0.95683 0.88775 1.24991 0.94275 0.92865 0.98870 1.69854 1.21720 1.32968 1.24298 0.86935 0.81333 0.80016 0.82169 1.19198 1.20336 1.17972 1.21653 0.77317 0.76075 0.86608 1.93071 1.76643 1.94081 1.53654 1.93139 1.45926 1.81967 1.96772 1.93116 1.95203 1.31963 1.95879 1.21717 0.96647 0.97225 1.00186 1.20237 0.92944 0.91831 1.03093 0.90255 0.89299 0.90749 0.81477 0.88566 0.88430 0.76191 0.91300 0.89150 0.90747 0.89077 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.24 36.01 0.37 -0.27 16 2 C 0.21 2.70 7.94 -155.76 -1.24 1.46 16 3 N -0.50 -7.28 11.27 -11.02 -0.12 -7.40 16 4 C -0.03 -0.34 11.84 -17.95 -0.21 -0.55 16 5 C -0.03 -0.32 6.57 -81.73 -0.54 -0.86 16 6 N -0.45 -5.76 3.13 -109.43 -0.34 -6.10 16 7 C 0.12 1.54 5.31 -3.92 -0.02 1.52 16 8 C -0.12 -1.55 2.52 -91.57 -0.23 -1.78 16 9 H 0.11 1.21 8.11 -51.93 -0.42 0.79 16 10 C 0.51 8.56 6.80 -10.98 -0.07 8.49 16 11 O -0.54 -10.81 14.41 5.56 0.08 -10.73 16 12 N -0.71 -12.66 4.73 -54.93 -0.26 -12.92 16 13 C 0.19 4.14 1.56 -69.08 -0.11 4.03 16 14 H 0.10 2.31 4.59 -51.93 -0.24 2.07 16 15 C -0.54 -12.89 8.52 -34.44 -0.29 -13.19 16 16 H 0.09 2.47 8.00 -52.49 -0.42 2.05 16 17 C 0.10 2.49 5.47 -17.82 -0.10 2.40 16 18 N -0.86 -22.54 13.96 55.43 0.77 -21.77 16 19 Si 0.87 19.08 27.58 -169.99 -4.69 14.39 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.25 -5.70 6.06 56.52 0.34 -5.36 16 23 C 0.44 9.29 2.83 37.16 0.11 9.40 16 24 F -0.19 -3.92 16.93 2.25 0.04 -3.88 16 25 F -0.20 -4.10 15.83 2.25 0.04 -4.06 16 26 F -0.18 -3.96 16.89 2.25 0.04 -3.92 16 27 C -0.12 -1.37 5.23 -26.40 -0.14 -1.51 16 28 C -0.04 -0.42 6.31 -27.60 -0.17 -0.59 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.62 7.95 -51.93 -0.41 0.21 16 32 H 0.17 1.74 8.06 -52.49 -0.42 1.31 16 33 H 0.10 1.27 7.81 -51.93 -0.41 0.87 16 34 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.40 6.32 7.91 -40.82 -0.32 6.00 16 36 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 37 H 0.09 1.00 7.29 -51.93 -0.38 0.62 16 38 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 343.02 15.07 5.17 5.17 Total: -1.00 -29.45 343.02 -6.68 -36.13 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -4.75 Total: 6.54 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -2.65 Total: 8.54 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.05 Total: -48.19 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 9 Polarization: -11.98 SS G_CDS: 0.11 Total: -11.87 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.69 Total: 14.39 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.45 -6.68 -36.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928803871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.085 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds