Wall clock time and date at job start Tue Mar 31 2020 16:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30783 * 125.72060 * 2 1 4 4 C 1.34437 * 109.31818 * 180.02562 * 3 2 1 5 5 C 1.33856 * 107.79500 * 0.02562 * 4 3 2 6 6 N 1.34405 * 125.72107 * 180.02562 * 2 1 3 7 7 C 1.46463 * 128.44557 * 359.86424 * 6 2 1 8 8 C 1.53282 * 108.69853 * 197.28493 * 7 6 2 9 9 H 1.08998 * 109.42970 * 69.28735 * 8 7 6 10 10 C 1.50710 * 109.43124 * 189.18379 * 8 7 6 11 11 O 1.21280 * 119.99533 * 0.02562 * 10 8 7 12 12 N 1.34771 * 119.99719 * 179.97438 * 10 8 7 13 13 C 1.46505 * 119.99711 * 180.02562 * 12 10 8 14 14 H 1.08995 * 109.46834 * 35.00229 * 13 12 10 15 15 C 1.50701 * 109.46836 * 155.00410 * 13 12 10 16 16 H 1.07996 * 119.99699 * 85.12927 * 15 13 12 17 17 C 1.37875 * 119.99901 * 265.39811 * 15 13 12 18 18 N 1.31518 * 119.99799 * 184.72563 * 17 15 13 19 19 Si 1.86799 * 119.99896 * 4.72661 * 17 15 13 20 20 H 1.48497 * 109.47199 * 84.72889 * 19 17 15 21 21 H 1.48507 * 109.46941 * 204.72844 * 19 17 15 22 22 H 1.48497 * 109.47361 * 324.72646 * 19 17 15 23 23 C 1.52995 * 109.46898 * 275.00314 * 13 12 10 24 24 F 1.39901 * 109.47477 * 305.03443 * 23 13 12 25 25 F 1.39898 * 109.47495 * 65.03693 * 23 13 12 26 26 F 1.39899 * 109.47094 * 185.03621 * 23 13 12 27 27 C 1.53108 * 109.71586 * 309.25870 * 8 7 6 28 28 C 1.50709 * 128.67776 * 179.85481 * 5 4 3 29 29 H 1.09007 * 109.47084 * 269.99934 * 1 2 3 30 30 H 1.09006 * 109.47105 * 29.99743 * 1 2 3 31 31 H 1.09000 * 109.47237 * 149.99764 * 1 2 3 32 32 H 1.07992 * 126.09902 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.59840 * 77.52278 * 7 6 2 34 34 H 1.09006 * 109.60521 * 317.05072 * 7 6 2 35 35 H 0.96996 * 120.00271 * 0.02562 * 12 10 8 36 36 H 0.97003 * 119.99596 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.50339 * 189.85082 * 27 8 7 38 38 H 1.08996 * 109.50226 * 309.95902 * 27 8 7 39 39 H 1.09002 * 109.74650 * 315.48233 * 28 5 4 40 40 H 1.08998 * 109.74897 * 76.15013 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5602 0.6822 -0.0006 5 6 3.5928 -0.6560 -0.0015 6 7 2.2917 -1.0912 -0.0005 7 6 1.8921 -2.5003 0.0016 8 6 3.0926 -3.3509 0.4315 9 1 3.3046 -3.1723 1.4856 10 6 2.7737 -4.8092 0.2243 11 8 1.6948 -5.1363 -0.2227 12 7 3.6878 -5.7496 0.5349 13 6 3.3779 -7.1672 0.3330 14 1 2.7563 -7.2802 -0.5551 15 6 4.6587 -7.9404 0.1517 16 1 5.2044 -8.2912 1.0151 17 6 5.1366 -8.1950 -1.1163 18 7 6.2026 -8.9481 -1.2783 19 14 4.2699 -7.4704 -2.6040 20 1 4.7654 -6.0910 -2.8423 21 1 4.5492 -8.3097 -3.7969 22 1 2.8063 -7.4346 -2.3555 23 6 2.6266 -7.7037 1.5531 24 9 3.3752 -7.4548 2.7084 25 9 1.3860 -7.0653 1.6547 26 9 2.4317 -9.0818 1.4117 27 6 4.3186 -2.9739 -0.4046 28 6 4.7918 -1.5690 -0.0054 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8901 -0.5138 31 1 -0.3634 -0.8900 -0.5139 32 1 4.4170 1.3396 -0.0003 33 1 1.5770 -2.7924 -1.0001 34 1 1.0706 -2.6464 0.7030 35 1 4.5507 -5.4878 0.8921 36 1 6.5390 -9.1269 -2.1703 37 1 5.1180 -3.6921 -0.2226 38 1 4.0546 -2.9827 -1.4621 39 1 5.5260 -1.2096 -0.7265 40 1 5.2364 -1.5973 0.9894 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928803871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:48 Heat of formation + Delta-G solvation = -164.693404 kcal Electronic energy + Delta-G solvation = -29645.853757 eV Core-core repulsion = 25045.024598 eV Total energy + Delta-G solvation = -4600.829159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.88130 -48.39226 -48.37115 -43.39432 -41.00462 -37.46094 -36.62609 -34.60924 -34.26113 -32.48235 -31.17075 -30.42039 -27.36725 -26.92006 -25.73680 -23.66952 -23.02332 -21.98612 -21.31615 -20.11664 -19.84955 -19.35382 -18.70198 -18.48975 -18.17009 -17.47530 -17.09192 -16.80383 -16.12592 -15.78460 -15.44685 -15.28768 -15.26682 -14.97086 -14.88492 -14.82294 -14.74399 -14.62544 -14.57179 -14.52263 -14.32130 -13.94682 -13.76561 -13.74268 -13.24014 -12.98124 -12.90596 -12.81894 -12.62102 -12.18348 -12.02519 -11.99481 -11.77998 -11.17537 -10.95664 -10.85700 -10.52860 -10.17687 -9.13851 -8.55738 -6.74760 1.06316 1.23427 1.31218 1.36299 1.45043 1.61478 2.01735 2.12044 2.14133 2.17511 2.87919 3.21093 3.25367 3.34569 3.42862 3.53973 3.59894 3.70807 3.77475 4.01236 4.15214 4.20857 4.30994 4.38932 4.45974 4.57655 4.63470 4.69275 4.83577 4.91051 4.94272 4.99154 5.03238 5.09689 5.37265 5.44720 5.82470 5.86137 6.23028 6.43320 6.60045 6.98299 7.10688 7.17050 8.56607 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.015306 B = 0.004079 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.890643 B = 6862.302266 C = 7695.005795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.194 3.806 3 N -0.529 5.529 4 C -0.043 4.043 5 C -0.031 4.031 6 N -0.454 5.454 7 C 0.128 3.872 8 C -0.109 4.109 9 H 0.128 0.872 10 C 0.510 3.490 11 O -0.571 6.571 12 N -0.705 5.705 13 C 0.202 3.798 14 H 0.087 0.913 15 C -0.535 4.535 16 H 0.066 0.934 17 C 0.066 3.934 18 N -0.898 5.898 19 Si 0.917 3.083 20 H -0.251 1.251 21 H -0.276 1.276 22 H -0.263 1.263 23 C 0.440 3.560 24 F -0.187 7.187 25 F -0.193 7.193 26 F -0.187 7.187 27 C -0.118 4.118 28 C -0.034 4.034 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.186 0.814 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.415 0.585 36 H 0.280 0.720 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.109 0.891 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.330 14.110 2.248 14.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.067 4.067 3 N -0.249 5.249 4 C -0.190 4.190 5 C -0.145 4.145 6 N -0.137 5.137 7 C 0.005 3.995 8 C -0.130 4.130 9 H 0.145 0.855 10 C 0.296 3.704 11 O -0.450 6.450 12 N -0.358 5.358 13 C 0.097 3.903 14 H 0.104 0.896 15 C -0.573 4.573 16 H 0.085 0.915 17 C -0.141 4.141 18 N -0.532 5.532 19 Si 0.741 3.259 20 H -0.175 1.175 21 H -0.201 1.201 22 H -0.188 1.188 23 C 0.384 3.616 24 F -0.169 7.169 25 F -0.174 7.174 26 F -0.169 7.169 27 C -0.156 4.156 28 C -0.072 4.072 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.203 0.797 33 H 0.105 0.895 34 H 0.123 0.877 35 H 0.253 0.747 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.127 0.873 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.302 14.434 1.830 15.485 hybrid contribution 0.303 -0.980 -0.300 1.069 sum -4.999 13.454 1.530 14.434 Atomic orbital electron populations 1.20304 0.83055 1.04738 1.04504 1.23703 0.96917 0.80970 1.05154 1.70428 1.03036 1.29086 1.22370 1.22190 0.94928 0.92727 1.09112 1.21595 0.86250 0.95719 1.10964 1.45381 1.06732 1.07182 1.54438 1.21652 0.97386 0.76237 1.04215 1.21539 0.97058 0.89883 1.04569 0.85453 1.20969 0.83953 0.88498 0.76960 1.90696 1.24605 1.83538 1.46181 1.47069 1.18771 1.05314 1.64609 1.19953 0.97258 0.81905 0.91147 0.89576 1.20652 1.06319 1.35551 0.94753 0.91539 1.25515 0.94634 0.93036 1.00931 1.69932 1.23432 1.34832 1.25045 0.86203 0.79846 0.80242 0.79656 1.17467 1.20130 1.18771 1.21602 0.77467 0.75773 0.86783 1.93080 1.76510 1.94002 1.53264 1.93145 1.45665 1.81833 1.96765 1.93103 1.95250 1.32576 1.95936 1.21734 0.96113 0.98589 0.99211 1.20313 0.92229 0.89915 1.04784 0.88993 0.88685 0.89831 0.79681 0.89543 0.87727 0.74694 0.90993 0.88428 0.91934 0.87284 0.87602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 10.24 71.24 0.73 -0.43 16 2 C 0.19 4.78 7.94 138.25 1.10 5.88 16 3 N -0.53 -14.80 11.27 -188.78 -2.13 -16.93 16 4 C -0.04 -1.04 11.84 83.30 0.99 -0.05 16 5 C -0.03 -0.69 6.57 40.73 0.27 -0.42 16 6 N -0.45 -10.69 3.13 -500.14 -1.57 -12.26 16 7 C 0.13 2.92 5.31 86.48 0.46 3.37 16 8 C -0.11 -2.47 2.52 -11.41 -0.03 -2.50 16 9 H 0.13 2.43 8.11 -2.39 -0.02 2.41 16 10 C 0.51 16.14 6.80 87.66 0.60 16.74 16 11 O -0.57 -21.89 14.41 -3.03 -0.04 -21.93 16 12 N -0.71 -24.00 4.73 -446.09 -2.11 -26.11 16 13 C 0.20 8.51 1.56 44.24 0.07 8.58 16 14 H 0.09 3.92 4.59 -2.39 -0.01 3.91 16 15 C -0.54 -25.73 8.52 25.60 0.22 -25.51 16 16 H 0.07 3.54 8.00 -2.91 -0.02 3.51 16 17 C 0.07 3.24 5.47 84.65 0.46 3.70 16 18 N -0.90 -47.61 13.96 21.45 0.30 -47.31 16 19 Si 0.92 38.68 27.58 68.60 1.89 40.57 16 20 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 21 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 22 H -0.26 -11.35 6.06 99.48 0.60 -10.75 16 23 C 0.44 18.23 2.83 71.98 0.20 18.43 16 24 F -0.19 -7.39 16.93 44.97 0.76 -6.63 16 25 F -0.19 -7.79 15.83 44.97 0.71 -7.07 16 26 F -0.19 -8.17 16.89 44.97 0.76 -7.41 16 27 C -0.12 -2.37 5.23 30.81 0.16 -2.20 16 28 C -0.03 -0.56 6.31 30.03 0.19 -0.37 16 29 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.08 1.25 7.95 -2.39 -0.02 1.23 16 32 H 0.19 3.47 8.06 -2.91 -0.02 3.45 16 33 H 0.09 2.16 7.81 -2.39 -0.02 2.14 16 34 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 35 H 0.41 12.17 7.91 -92.71 -0.73 11.44 16 36 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 37 H 0.10 1.84 7.29 -2.39 -0.02 1.82 16 38 H 0.06 1.42 8.12 -2.39 -0.02 1.40 16 39 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -62.69 343.02 4.26 -58.44 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.26 Total: 21.42 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: 5.41 Total: 25.23 kcal Atomic # 7 Polarization: -97.10 SS G_CDS: -5.50 Total: -102.60 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.04 Total: -21.93 kcal Atomic # 9 Polarization: -23.35 SS G_CDS: 2.23 Total: -21.12 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 1.89 Total: 40.57 kcal Total: -62.69 4.26 -58.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928803871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.254 kcal (2) G-P(sol) polarization free energy of solvation -62.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds