Wall clock time and date at job start Tue Mar 31 2020 16:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30784 * 125.72490 * 2 1 4 4 C 1.34427 * 109.31951 * 180.02562 * 3 2 1 5 5 C 1.33862 * 107.79909 * 0.02562 * 4 3 2 6 6 N 1.34403 * 125.71891 * 179.97438 * 2 1 3 7 7 C 1.46476 * 128.44960 * 359.88676 * 6 2 1 8 8 C 1.53287 * 108.69455 * 197.29828 * 7 6 2 9 9 C 1.53116 * 109.70581 * 309.23286 * 8 7 6 10 10 H 1.09001 * 109.49868 * 309.92819 * 9 8 7 11 11 C 1.50705 * 109.49465 * 189.85985 * 9 8 7 12 12 O 1.21277 * 120.00089 * 0.02562 * 11 9 8 13 13 N 1.34776 * 119.99557 * 180.02562 * 11 9 8 14 14 C 1.46495 * 119.99664 * 180.02562 * 13 11 9 15 15 H 1.09003 * 109.47232 * 324.99313 * 14 13 11 16 16 C 1.50707 * 109.46930 * 204.99876 * 14 13 11 17 17 H 1.07994 * 119.99813 * 354.16580 * 16 14 13 18 18 C 1.37875 * 119.99980 * 174.17196 * 16 14 13 19 19 N 1.31513 * 120.00140 * 332.17027 * 18 16 14 20 20 Si 1.86802 * 120.00281 * 152.44859 * 18 16 14 21 21 H 1.48496 * 109.47682 * 179.72416 * 20 18 16 22 22 H 1.48506 * 109.46678 * 299.72544 * 20 18 16 23 23 H 1.48495 * 109.46822 * 59.71918 * 20 18 16 24 24 C 1.53002 * 109.47646 * 84.99443 * 14 13 11 25 25 F 1.39904 * 109.47165 * 176.81193 * 24 14 13 26 26 F 1.39899 * 109.46745 * 296.81131 * 24 14 13 27 27 F 1.39898 * 109.46934 * 56.81232 * 24 14 13 28 28 C 1.50713 * 128.67875 * 179.84335 * 5 4 3 29 29 H 1.08997 * 109.47495 * 270.02689 * 1 2 3 30 30 H 1.09001 * 109.46894 * 30.02258 * 1 2 3 31 31 H 1.08997 * 109.47118 * 150.02261 * 1 2 3 32 32 H 1.07997 * 126.09754 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.59717 * 77.53820 * 7 6 2 34 34 H 1.08994 * 109.72915 * 317.14185 * 7 6 2 35 35 H 1.08992 * 109.43163 * 189.15709 * 8 7 6 36 36 H 1.09004 * 109.43091 * 69.30341 * 8 7 6 37 37 H 0.96997 * 119.99856 * 359.97438 * 13 11 9 38 38 H 0.96997 * 120.00172 * 354.74589 * 19 18 16 39 39 H 1.09002 * 109.73932 * 76.17823 * 28 5 4 40 40 H 1.08991 * 109.74694 * 315.45780 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2707 1.0617 0.0000 4 6 3.5602 0.6821 -0.0006 5 6 3.5928 -0.6561 -0.0015 6 7 2.2917 -1.0912 0.0005 7 6 1.8921 -2.5004 0.0034 8 6 3.0925 -3.3506 0.4346 9 6 4.3187 -2.9744 -0.4017 10 1 4.0549 -2.9849 -1.4593 11 6 5.4238 -3.9673 -0.1489 12 8 5.2488 -4.8858 0.6234 13 7 6.6066 -3.8344 -0.7811 14 6 7.6807 -4.8000 -0.5358 15 1 7.6496 -5.1214 0.5053 16 6 9.0119 -4.1541 -0.8225 17 1 9.0503 -3.1603 -1.2435 18 6 10.1805 -4.8321 -0.5475 19 7 10.2085 -5.7326 0.4105 20 14 11.7262 -4.4660 -1.5305 21 1 12.8390 -5.3175 -1.0388 22 1 11.4795 -4.7543 -2.9663 23 1 12.0887 -3.0352 -1.3682 24 6 7.4949 -6.0129 -1.4497 25 9 8.5600 -6.9015 -1.2676 26 9 6.2927 -6.6548 -1.1338 27 9 7.4622 -5.5913 -2.7832 28 6 4.7919 -1.5691 -0.0056 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 4.4170 1.3395 -0.0003 33 1 1.5776 -2.7933 -0.9983 34 1 1.0693 -2.6481 0.7028 35 1 2.8618 -4.4054 0.2859 36 1 3.3037 -3.1714 1.4888 37 1 6.7464 -3.1000 -1.3991 38 1 9.4301 -5.8660 0.9737 39 1 5.2362 -1.5977 0.9893 40 1 5.5256 -1.2100 -0.7271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928803878.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:30 Heat of formation + Delta-G solvation = -145.299807 kcal Electronic energy + Delta-G solvation = -29429.972130 eV Core-core repulsion = 24829.983940 eV Total energy + Delta-G solvation = -4599.988190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.85557 -46.41497 -46.30130 -42.50378 -39.59088 -36.41733 -34.98785 -33.63936 -32.72986 -31.36606 -29.93758 -28.47980 -26.62090 -24.54400 -24.42383 -23.13058 -21.52956 -20.79218 -20.05398 -19.08983 -18.04475 -17.37929 -17.12758 -16.91834 -16.80223 -16.25060 -16.04868 -15.14127 -14.70237 -14.22480 -14.13952 -13.95920 -13.78796 -13.63012 -13.38972 -13.32472 -13.16069 -13.04405 -12.88915 -12.83731 -12.66472 -12.58364 -12.53900 -12.50823 -12.02271 -11.89157 -11.40108 -11.29242 -11.18244 -11.13187 -10.81848 -10.25282 -10.07998 -9.63924 -9.62231 -9.44465 -8.60391 -8.47345 -8.28110 -6.86120 -4.57983 1.91853 2.60865 2.88989 3.03396 3.26627 3.34680 3.45338 3.52103 4.08612 4.22221 4.27119 4.32560 4.40552 4.47687 4.64645 4.80135 4.83034 4.91697 5.02102 5.13900 5.23576 5.26480 5.31434 5.39121 5.48985 5.51837 5.55931 5.57819 5.65770 5.76242 5.84030 5.95831 6.28781 6.52708 6.67503 6.86998 7.09998 7.22461 7.97766 7.99753 8.08391 8.34137 8.59035 9.09460 10.48618 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.020213 B = 0.003324 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.895877 B = 8421.811221 C = 9245.290344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.201 3.799 3 N -0.494 5.494 4 C -0.022 4.022 5 C -0.018 4.018 6 N -0.452 5.452 7 C 0.104 3.896 8 C -0.113 4.113 9 C -0.110 4.110 10 H 0.099 0.901 11 C 0.511 3.489 12 O -0.535 6.535 13 N -0.702 5.702 14 C 0.236 3.764 15 H 0.079 0.921 16 C -0.651 4.651 17 H 0.074 0.926 18 C 0.053 3.947 19 N -0.845 5.845 20 Si 1.059 2.941 21 H -0.278 1.278 22 H -0.280 1.280 23 H -0.283 1.283 24 C 0.414 3.586 25 F -0.175 7.175 26 F -0.207 7.207 27 F -0.197 7.197 28 C -0.036 4.036 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.170 0.830 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.402 0.598 38 H 0.277 0.723 39 H 0.090 0.910 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.957 7.367 -2.117 16.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.061 4.061 3 N -0.214 5.214 4 C -0.169 4.169 5 C -0.132 4.132 6 N -0.136 5.136 7 C -0.019 4.019 8 C -0.151 4.151 9 C -0.132 4.132 10 H 0.117 0.883 11 C 0.296 3.704 12 O -0.411 6.411 13 N -0.351 5.351 14 C 0.130 3.870 15 H 0.096 0.904 16 C -0.686 4.686 17 H 0.093 0.907 18 C -0.161 4.161 19 N -0.473 5.473 20 Si 0.885 3.115 21 H -0.204 1.204 22 H -0.206 1.206 23 H -0.209 1.209 24 C 0.358 3.642 25 F -0.157 7.157 26 F -0.189 7.189 27 F -0.179 7.179 28 C -0.075 4.075 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.188 0.812 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.236 0.764 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.867 6.844 -1.746 15.562 hybrid contribution -1.236 -0.351 -0.383 1.341 sum -15.103 6.493 -2.130 16.577 Atomic orbital electron populations 1.20140 0.85105 1.03820 1.03332 1.23083 0.95544 0.81354 1.06083 1.70437 1.02007 1.28101 1.20859 1.21825 0.94795 0.91904 1.08369 1.21037 0.85346 0.95323 1.11491 1.45302 1.06319 1.07257 1.54746 1.22045 0.98962 0.77638 1.03221 1.21681 0.91780 1.00736 1.00923 1.21408 0.94903 0.94686 1.02174 0.88274 1.20358 0.83360 0.85767 0.80885 1.90708 1.81104 1.33468 1.35841 1.45933 1.12845 1.30512 1.45772 1.19685 0.87917 0.84303 0.95100 0.90395 1.21566 0.88735 1.05900 1.52376 0.90739 1.25933 1.02093 0.93097 0.94993 1.70764 1.32796 1.31571 1.12128 0.83713 0.75110 0.76411 0.76310 1.20350 1.20632 1.20851 1.23053 0.72409 0.87539 0.81187 1.93157 1.56710 1.70732 1.95075 1.93093 1.48381 1.84635 1.92761 1.93019 1.96224 1.90255 1.38419 1.20197 0.93225 0.90129 1.03904 0.90341 0.89281 0.91025 0.81239 0.89619 0.88794 0.88215 0.90035 0.76367 0.91159 0.89190 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.24 36.01 0.37 -0.11 16 2 C 0.20 2.35 7.94 -155.76 -1.24 1.11 16 3 N -0.49 -6.94 11.27 -11.02 -0.12 -7.07 16 4 C -0.02 -0.28 11.84 -17.95 -0.21 -0.50 16 5 C -0.02 -0.22 6.57 -81.73 -0.54 -0.76 16 6 N -0.45 -5.07 3.13 -109.42 -0.34 -5.41 16 7 C 0.10 0.89 6.61 -3.91 -0.03 0.87 16 8 C -0.11 -1.25 4.66 -26.52 -0.12 -1.37 16 9 C -0.11 -1.37 2.54 -91.46 -0.23 -1.60 16 10 H 0.10 1.12 8.12 -51.93 -0.42 0.70 16 11 C 0.51 8.88 6.74 -10.98 -0.07 8.80 16 12 O -0.53 -11.23 14.38 5.56 0.08 -11.15 16 13 N -0.70 -13.06 4.85 -54.93 -0.27 -13.33 16 14 C 0.24 5.50 2.00 -69.08 -0.14 5.36 16 15 H 0.08 2.02 6.46 -51.93 -0.34 1.69 16 16 C -0.65 -16.03 8.32 -34.44 -0.29 -16.31 16 17 H 0.07 1.76 7.86 -52.49 -0.41 1.35 16 18 C 0.05 1.37 4.23 -17.82 -0.08 1.29 16 19 N -0.84 -23.17 12.35 55.43 0.68 -22.48 16 20 Si 1.06 22.87 29.99 -169.99 -5.10 17.77 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 24 C 0.41 9.90 2.82 37.16 0.10 10.00 16 25 F -0.18 -4.55 14.71 2.25 0.03 -4.51 16 26 F -0.21 -4.87 15.77 2.25 0.04 -4.83 16 27 F -0.20 -4.52 16.97 2.25 0.04 -4.48 16 28 C -0.04 -0.42 5.45 -27.63 -0.15 -0.57 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.39 7.95 -51.93 -0.41 -0.03 16 32 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 1.13 7.77 -51.93 -0.40 0.73 16 36 H 0.08 0.99 8.11 -51.93 -0.42 0.56 16 37 H 0.40 6.46 8.25 -40.82 -0.34 6.13 16 38 H 0.28 7.70 7.25 -40.82 -0.30 7.40 16 39 H 0.09 1.11 8.11 -51.93 -0.42 0.69 16 40 H 0.10 1.00 7.95 -51.93 -0.41 0.58 16 LS Contribution 343.16 15.07 5.17 5.17 Total: -1.00 -31.55 343.16 -7.19 -38.74 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -4.78 Total: 5.37 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -2.62 Total: 6.21 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.05 Total: -48.29 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.08 Total: -11.15 kcal Atomic # 9 Polarization: -13.93 SS G_CDS: 0.11 Total: -13.82 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.10 Total: 17.77 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.55 -7.19 -38.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928803878.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.562 kcal (2) G-P(sol) polarization free energy of solvation -31.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds