Wall clock time and date at job start Tue Mar 31 2020 16:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30784 * 125.72490 * 2 1 4 4 C 1.34427 * 109.31951 * 180.02562 * 3 2 1 5 5 C 1.33862 * 107.79909 * 0.02562 * 4 3 2 6 6 N 1.34403 * 125.71891 * 179.97438 * 2 1 3 7 7 C 1.46476 * 128.44960 * 359.88676 * 6 2 1 8 8 C 1.53287 * 108.69455 * 197.29828 * 7 6 2 9 9 C 1.53116 * 109.70581 * 309.23286 * 8 7 6 10 10 H 1.09001 * 109.49868 * 309.92819 * 9 8 7 11 11 C 1.50705 * 109.49465 * 189.85985 * 9 8 7 12 12 O 1.21277 * 120.00089 * 0.02562 * 11 9 8 13 13 N 1.34776 * 119.99557 * 180.02562 * 11 9 8 14 14 C 1.46495 * 119.99664 * 180.02562 * 13 11 9 15 15 H 1.09003 * 109.47232 * 324.99313 * 14 13 11 16 16 C 1.50707 * 109.46930 * 204.99876 * 14 13 11 17 17 H 1.07994 * 119.99813 * 354.16580 * 16 14 13 18 18 C 1.37875 * 119.99980 * 174.17196 * 16 14 13 19 19 N 1.31513 * 120.00140 * 332.17027 * 18 16 14 20 20 Si 1.86802 * 120.00281 * 152.44859 * 18 16 14 21 21 H 1.48496 * 109.47682 * 179.72416 * 20 18 16 22 22 H 1.48506 * 109.46678 * 299.72544 * 20 18 16 23 23 H 1.48495 * 109.46822 * 59.71918 * 20 18 16 24 24 C 1.53002 * 109.47646 * 84.99443 * 14 13 11 25 25 F 1.39904 * 109.47165 * 176.81193 * 24 14 13 26 26 F 1.39899 * 109.46745 * 296.81131 * 24 14 13 27 27 F 1.39898 * 109.46934 * 56.81232 * 24 14 13 28 28 C 1.50713 * 128.67875 * 179.84335 * 5 4 3 29 29 H 1.08997 * 109.47495 * 270.02689 * 1 2 3 30 30 H 1.09001 * 109.46894 * 30.02258 * 1 2 3 31 31 H 1.08997 * 109.47118 * 150.02261 * 1 2 3 32 32 H 1.07997 * 126.09754 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.59717 * 77.53820 * 7 6 2 34 34 H 1.08994 * 109.72915 * 317.14185 * 7 6 2 35 35 H 1.08992 * 109.43163 * 189.15709 * 8 7 6 36 36 H 1.09004 * 109.43091 * 69.30341 * 8 7 6 37 37 H 0.96997 * 119.99856 * 359.97438 * 13 11 9 38 38 H 0.96997 * 120.00172 * 354.74589 * 19 18 16 39 39 H 1.09002 * 109.73932 * 76.17823 * 28 5 4 40 40 H 1.08991 * 109.74694 * 315.45780 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2707 1.0617 0.0000 4 6 3.5602 0.6821 -0.0006 5 6 3.5928 -0.6561 -0.0015 6 7 2.2917 -1.0912 0.0005 7 6 1.8921 -2.5004 0.0034 8 6 3.0925 -3.3506 0.4346 9 6 4.3187 -2.9744 -0.4017 10 1 4.0549 -2.9849 -1.4593 11 6 5.4238 -3.9673 -0.1489 12 8 5.2488 -4.8858 0.6234 13 7 6.6066 -3.8344 -0.7811 14 6 7.6807 -4.8000 -0.5358 15 1 7.6496 -5.1214 0.5053 16 6 9.0119 -4.1541 -0.8225 17 1 9.0503 -3.1603 -1.2435 18 6 10.1805 -4.8321 -0.5475 19 7 10.2085 -5.7326 0.4105 20 14 11.7262 -4.4660 -1.5305 21 1 12.8390 -5.3175 -1.0388 22 1 11.4795 -4.7543 -2.9663 23 1 12.0887 -3.0352 -1.3682 24 6 7.4949 -6.0129 -1.4497 25 9 8.5600 -6.9015 -1.2676 26 9 6.2927 -6.6548 -1.1338 27 9 7.4622 -5.5913 -2.7832 28 6 4.7919 -1.5691 -0.0056 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 4.4170 1.3395 -0.0003 33 1 1.5776 -2.7933 -0.9983 34 1 1.0693 -2.6481 0.7028 35 1 2.8618 -4.4054 0.2859 36 1 3.3037 -3.1714 1.4888 37 1 6.7464 -3.1000 -1.3991 38 1 9.4301 -5.8660 0.9737 39 1 5.2362 -1.5977 0.9893 40 1 5.5256 -1.2100 -0.7271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928803878.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:29 Heat of formation + Delta-G solvation = -164.536198 kcal Electronic energy + Delta-G solvation = -29430.806282 eV Core-core repulsion = 24829.983940 eV Total energy + Delta-G solvation = -4600.822342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.80285 -48.33871 -48.28117 -43.37959 -41.00119 -37.50576 -36.67743 -34.80005 -34.25089 -32.24195 -30.84581 -30.06041 -27.57558 -26.50999 -25.34837 -24.38835 -23.11522 -21.64909 -21.47611 -20.06310 -19.78231 -19.27130 -19.04771 -18.46330 -17.91892 -17.65683 -17.00209 -16.46697 -16.03858 -15.62506 -15.31472 -15.28561 -15.12273 -15.01693 -14.85369 -14.77019 -14.64238 -14.55869 -14.51734 -14.47196 -14.43111 -13.94267 -13.73172 -13.25638 -13.16812 -13.04007 -12.89901 -12.77775 -12.52895 -12.22758 -12.10950 -11.94148 -11.48425 -11.11740 -10.81820 -10.47229 -10.46970 -10.22006 -9.17490 -8.88316 -6.59535 1.05264 1.45330 1.56010 1.63238 1.80726 1.82856 1.99129 2.12191 2.22870 2.49528 2.85990 3.24750 3.40026 3.47641 3.51406 3.57570 3.61584 3.71100 3.75307 3.99273 4.11321 4.22129 4.31726 4.44079 4.59316 4.59838 4.67777 4.68884 4.75287 4.84777 4.94018 5.04297 5.09046 5.26216 5.36011 5.40640 5.77911 6.02388 6.28442 6.30330 6.57084 7.08854 7.11541 7.22358 8.45247 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.020213 B = 0.003324 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.895877 B = 8421.811221 C = 9245.290344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.201 3.799 3 N -0.533 5.533 4 C -0.040 4.040 5 C -0.026 4.026 6 N -0.454 5.454 7 C 0.107 3.893 8 C -0.110 4.110 9 C -0.097 4.097 10 H 0.121 0.879 11 C 0.510 3.490 12 O -0.573 6.573 13 N -0.697 5.697 14 C 0.241 3.759 15 H 0.045 0.955 16 C -0.653 4.653 17 H 0.086 0.914 18 C 0.010 3.990 19 N -0.874 5.874 20 Si 1.100 2.900 21 H -0.286 1.286 22 H -0.271 1.271 23 H -0.258 1.258 24 C 0.414 3.586 25 F -0.189 7.189 26 F -0.205 7.205 27 F -0.189 7.189 28 C -0.028 4.028 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.178 0.822 33 H 0.109 0.891 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.416 0.584 38 H 0.262 0.738 39 H 0.078 0.922 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.403 8.461 -3.516 18.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.061 4.061 3 N -0.254 5.254 4 C -0.186 4.186 5 C -0.141 4.141 6 N -0.138 5.138 7 C -0.014 4.014 8 C -0.149 4.149 9 C -0.118 4.118 10 H 0.139 0.861 11 C 0.297 3.703 12 O -0.452 6.452 13 N -0.348 5.348 14 C 0.133 3.867 15 H 0.063 0.937 16 C -0.688 4.688 17 H 0.104 0.896 18 C -0.198 4.198 19 N -0.503 5.503 20 Si 0.921 3.079 21 H -0.212 1.212 22 H -0.197 1.197 23 H -0.182 1.182 24 C 0.358 3.642 25 F -0.171 7.171 26 F -0.187 7.187 27 F -0.170 7.170 28 C -0.067 4.067 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.195 0.805 33 H 0.127 0.873 34 H 0.139 0.861 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.253 0.747 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.342 7.970 -3.161 17.575 hybrid contribution -0.871 -0.698 0.079 1.120 sum -16.213 7.272 -3.081 18.035 Atomic orbital electron populations 1.20333 0.82221 1.05205 1.04572 1.23853 0.97105 0.80878 1.04269 1.70430 1.02626 1.29657 1.22660 1.22100 0.95132 0.92613 1.08792 1.21021 0.85963 0.95124 1.11984 1.45479 1.05844 1.08164 1.54289 1.22218 0.98227 0.75670 1.05290 1.21638 0.92196 1.01196 0.99827 1.21387 0.93326 0.93348 1.03733 0.86136 1.21221 0.83603 0.85945 0.79491 1.90692 1.81737 1.35418 1.37343 1.45836 1.12404 1.30103 1.46441 1.19281 0.89214 0.84957 0.93219 0.93690 1.21848 0.89145 1.06359 1.51456 0.89562 1.27216 1.05165 0.92536 0.94931 1.70880 1.32249 1.33588 1.13571 0.83187 0.71877 0.77511 0.75338 1.21177 1.19674 1.18190 1.23045 0.72092 0.87422 0.81614 1.93129 1.57470 1.71293 1.95206 1.93091 1.48169 1.84642 1.92810 1.93027 1.96173 1.90110 1.37739 1.20124 0.93465 0.89461 1.03655 0.89059 0.89030 0.88529 0.80464 0.87321 0.86125 0.88460 0.91550 0.74730 0.92767 0.90371 0.87296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.24 71.24 0.73 -0.02 16 2 C 0.20 4.24 7.94 138.25 1.10 5.33 16 3 N -0.53 -14.37 11.27 -188.78 -2.13 -16.50 16 4 C -0.04 -1.00 11.84 83.30 0.99 -0.02 16 5 C -0.03 -0.61 6.57 40.73 0.27 -0.34 16 6 N -0.45 -9.04 3.13 -500.11 -1.57 -10.60 16 7 C 0.11 1.49 6.61 86.48 0.57 2.06 16 8 C -0.11 -2.23 4.66 30.73 0.14 -2.09 16 9 C -0.10 -2.24 2.54 -11.34 -0.03 -2.26 16 10 H 0.12 2.35 8.12 -2.39 -0.02 2.33 16 11 C 0.51 17.43 6.74 87.66 0.59 18.02 16 12 O -0.57 -24.34 14.38 -3.02 -0.04 -24.38 16 13 N -0.70 -25.51 4.85 -446.09 -2.16 -27.67 16 14 C 0.24 11.30 2.00 44.25 0.09 11.39 16 15 H 0.05 2.43 6.46 -2.39 -0.02 2.42 16 16 C -0.65 -31.87 8.32 25.60 0.21 -31.66 16 17 H 0.09 3.94 7.86 -2.91 -0.02 3.91 16 18 C 0.01 0.51 4.23 84.65 0.36 0.87 16 19 N -0.87 -48.89 12.35 21.45 0.26 -48.62 16 20 Si 1.10 45.15 29.99 68.60 2.06 47.21 16 21 H -0.29 -12.04 7.11 99.48 0.71 -11.34 16 22 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 23 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 24 C 0.41 19.81 2.82 71.98 0.20 20.02 16 25 F -0.19 -9.95 14.71 44.97 0.66 -9.29 16 26 F -0.21 -9.68 15.77 44.97 0.71 -8.97 16 27 F -0.19 -8.42 16.97 44.97 0.76 -7.66 16 28 C -0.03 -0.62 5.45 30.01 0.16 -0.46 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 0.63 7.95 -2.39 -0.02 0.61 16 32 H 0.18 3.85 8.06 -2.91 -0.02 3.83 16 33 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.10 2.05 7.77 -2.39 -0.02 2.03 16 36 H 0.07 1.55 8.11 -2.39 -0.02 1.53 16 37 H 0.42 12.71 8.25 -92.71 -0.76 11.94 16 38 H 0.26 15.16 7.25 -92.71 -0.67 14.48 16 39 H 0.08 1.90 8.11 -2.39 -0.02 1.88 16 40 H 0.11 2.06 7.95 -2.39 -0.02 2.05 16 Total: -1.00 -69.09 343.16 4.37 -64.72 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.43 Total: 20.94 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: 5.38 Total: 20.84 kcal Atomic # 7 Polarization: -97.81 SS G_CDS: -5.59 Total: -103.40 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.04 Total: -24.38 kcal Atomic # 9 Polarization: -28.05 SS G_CDS: 2.13 Total: -25.92 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.06 Total: 47.21 kcal Total: -69.09 4.37 -64.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928803878.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.821 kcal (2) G-P(sol) polarization free energy of solvation -69.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds