Wall clock time and date at job start Tue Mar 31 2020 16:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30786 * 125.72293 * 2 1 4 4 C 1.34422 * 109.32116 * 179.97438 * 3 2 1 5 5 C 1.33864 * 107.79920 * 359.97438 * 4 3 2 6 6 N 1.34402 * 125.72338 * 180.02562 * 2 1 3 7 7 C 1.46476 * 128.44228 * 0.17250 * 6 2 1 8 8 C 1.53283 * 108.69480 * 162.68592 * 7 6 2 9 9 C 1.53122 * 109.70350 * 50.75806 * 8 7 6 10 10 H 1.09004 * 109.49741 * 50.02391 * 9 8 7 11 11 C 1.50694 * 109.49995 * 170.09643 * 9 8 7 12 12 O 1.21286 * 120.00069 * 359.97438 * 11 9 8 13 13 N 1.34774 * 120.00329 * 179.97438 * 11 9 8 14 14 C 1.46501 * 120.00249 * 180.02562 * 13 11 9 15 15 H 1.09007 * 109.46748 * 325.00117 * 14 13 11 16 16 C 1.50703 * 109.46926 * 205.00408 * 14 13 11 17 17 H 1.07990 * 120.00428 * 359.97438 * 16 14 13 18 18 C 1.37881 * 119.99634 * 179.97438 * 16 14 13 19 19 N 1.31514 * 120.00434 * 359.97438 * 18 16 14 20 20 Si 1.86807 * 119.99900 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46876 * 59.99884 * 20 18 16 22 22 H 1.48495 * 109.47039 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46702 * 300.00165 * 20 18 16 24 24 C 1.52997 * 109.47485 * 84.99939 * 14 13 11 25 25 F 1.39906 * 109.46628 * 60.00149 * 24 14 13 26 26 F 1.39892 * 109.47224 * 180.02562 * 24 14 13 27 27 F 1.39897 * 109.47234 * 300.00528 * 24 14 13 28 28 C 1.50708 * 128.68505 * 180.33235 * 5 4 3 29 29 H 1.09000 * 109.47313 * 89.96679 * 1 2 3 30 30 H 1.09000 * 109.46750 * 209.97610 * 1 2 3 31 31 H 1.09003 * 109.46677 * 329.97453 * 1 2 3 32 32 H 1.07999 * 126.10462 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.59498 * 282.44768 * 7 6 2 34 34 H 1.09004 * 109.60028 * 42.76417 * 7 6 2 35 35 H 1.09000 * 109.43409 * 170.82896 * 8 7 6 36 36 H 1.08995 * 109.42978 * 290.68805 * 8 7 6 37 37 H 0.96999 * 119.99831 * 0.02562 * 13 11 9 38 38 H 0.96998 * 120.00634 * 179.97438 * 19 18 16 39 39 H 1.09000 * 109.74427 * 283.85983 * 28 5 4 40 40 H 1.09001 * 109.74199 * 44.57645 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5602 0.6822 0.0006 5 6 3.5928 -0.6560 0.0015 6 7 2.2918 -1.0911 -0.0005 7 6 1.8921 -2.5003 -0.0046 8 6 3.0927 -3.3503 -0.4356 9 6 4.3185 -2.9744 0.4015 10 1 4.0539 -2.9848 1.4590 11 6 5.4234 -3.9677 0.1497 12 8 5.2486 -4.8863 -0.6227 13 7 6.6058 -3.8353 0.7827 14 6 7.6802 -4.8006 0.5374 15 1 7.2507 -5.7903 0.3811 16 6 8.6046 -4.8364 1.7270 17 1 8.4115 -4.2031 2.5802 18 6 9.6971 -5.6776 1.7260 19 7 9.9320 -6.4492 0.6873 20 14 10.8435 -5.7215 3.2003 21 1 10.0806 -6.1254 4.4087 22 1 11.9323 -6.7000 2.9517 23 1 11.4289 -4.3732 3.4123 24 6 8.4663 -4.3836 -0.7072 25 9 9.0175 -3.1134 -0.5065 26 9 9.4918 -5.3057 -0.9417 27 9 7.6081 -4.3503 -1.8115 28 6 4.7918 -1.5690 0.0092 29 1 -0.3634 0.0006 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5143 32 1 4.4170 1.3396 0.0003 33 1 1.5770 -2.7938 0.9968 34 1 1.0688 -2.6449 -0.7041 35 1 2.8620 -4.4052 -0.2876 36 1 3.3044 -3.1705 -1.4896 37 1 6.7455 -3.1009 1.4007 38 1 10.7008 -7.0408 0.6864 39 1 5.2397 -1.5971 -0.9841 40 1 5.5231 -1.2103 0.7335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928803884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:34 Heat of formation + Delta-G solvation = -143.403713 kcal Electronic energy + Delta-G solvation = -29558.434572 eV Core-core repulsion = 24958.528603 eV Total energy + Delta-G solvation = -4599.905969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.42037 -48.05475 -47.73329 -43.35348 -40.88657 -37.40942 -36.45484 -34.68028 -34.19994 -32.21701 -30.84530 -30.13726 -27.57313 -26.58345 -25.30574 -24.30307 -22.91647 -21.62028 -21.39025 -19.98976 -19.29938 -18.86738 -18.65113 -18.33667 -17.68316 -17.38462 -16.94790 -16.78777 -16.14630 -15.93632 -15.07953 -15.02191 -14.98944 -14.94735 -14.65465 -14.50493 -14.47670 -14.42077 -14.29313 -14.03587 -13.93390 -13.86892 -13.68044 -13.15425 -13.07349 -12.84939 -12.78247 -12.73331 -12.61322 -12.25648 -12.14348 -12.06669 -11.60349 -11.04697 -10.72484 -10.68240 -10.44387 -10.07842 -9.15480 -8.22010 -6.52763 1.07571 1.46968 1.48353 1.57171 1.59578 1.84511 2.12992 2.16194 2.38874 2.53183 2.93806 3.33018 3.54569 3.56258 3.63988 3.74704 3.79768 3.87670 4.00245 4.13480 4.22656 4.26794 4.34762 4.48906 4.61845 4.67886 4.72258 4.77345 4.87208 4.93430 4.96821 5.09824 5.11305 5.39661 5.43014 5.53535 5.64472 5.79733 6.33146 6.51973 6.68575 7.13530 7.16297 7.32310 8.70363 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.021646 B = 0.003225 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.207046 B = 8681.080344 C = 8867.372698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.201 3.799 3 N -0.534 5.534 4 C -0.041 4.041 5 C -0.025 4.025 6 N -0.453 5.453 7 C 0.107 3.893 8 C -0.110 4.110 9 C -0.096 4.096 10 H 0.125 0.875 11 C 0.510 3.490 12 O -0.574 6.574 13 N -0.703 5.703 14 C 0.252 3.748 15 H 0.048 0.952 16 C -0.562 4.562 17 H 0.093 0.907 18 C 0.016 3.984 19 N -0.875 5.875 20 Si 0.980 3.020 21 H -0.262 1.262 22 H -0.286 1.286 23 H -0.266 1.266 24 C 0.413 3.587 25 F -0.203 7.203 26 F -0.152 7.152 27 F -0.219 7.219 28 C -0.031 4.031 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.177 0.823 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.062 0.938 37 H 0.414 0.586 38 H 0.268 0.732 39 H 0.072 0.928 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.589 8.473 2.273 17.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.061 4.061 3 N -0.254 5.254 4 C -0.188 4.188 5 C -0.140 4.140 6 N -0.137 5.137 7 C -0.014 4.014 8 C -0.149 4.149 9 C -0.118 4.118 10 H 0.143 0.857 11 C 0.298 3.702 12 O -0.453 6.453 13 N -0.353 5.353 14 C 0.145 3.855 15 H 0.066 0.934 16 C -0.599 4.599 17 H 0.111 0.889 18 C -0.190 4.190 19 N -0.509 5.509 20 Si 0.804 3.196 21 H -0.186 1.186 22 H -0.212 1.212 23 H -0.191 1.191 24 C 0.357 3.643 25 F -0.184 7.184 26 F -0.134 7.134 27 F -0.201 7.201 28 C -0.069 4.069 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.194 0.806 33 H 0.129 0.871 34 H 0.138 0.862 35 H 0.118 0.882 36 H 0.081 0.919 37 H 0.251 0.749 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.923 8.323 1.614 18.039 hybrid contribution 1.723 -0.675 0.143 1.856 sum -14.199 7.648 1.757 16.223 Atomic orbital electron populations 1.20334 0.82181 1.05232 1.04549 1.23858 0.97110 0.80882 1.04270 1.70423 1.02588 1.29695 1.22694 1.22088 0.95138 0.92628 1.08898 1.21001 0.85985 0.95089 1.11914 1.45488 1.05781 1.08240 1.54225 1.22241 0.98192 0.75588 1.05369 1.21635 0.92219 1.01341 0.99663 1.21367 0.93414 0.93106 1.03901 0.85734 1.21149 0.83728 0.85990 0.79376 1.90692 1.82009 1.35492 1.37088 1.45960 1.12519 1.30860 1.45999 1.19301 0.85603 0.89915 0.90672 0.93380 1.21209 1.10573 1.26293 1.01814 0.88883 1.25976 0.99147 0.94501 0.99331 1.70515 1.28777 1.22571 1.28989 0.85254 0.77574 0.78304 0.78483 1.18608 1.21195 1.19102 1.23336 0.80037 0.74523 0.86438 1.92993 1.87159 1.43007 1.95280 1.93373 1.60345 1.64744 1.94888 1.93059 1.71347 1.96446 1.59292 1.20111 0.93517 0.89876 1.03412 0.89108 0.88447 0.89041 0.80559 0.87091 0.86215 0.88170 0.91937 0.74938 0.92195 0.90907 0.87310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.76 10.24 71.24 0.73 -0.03 16 2 C 0.20 4.30 7.94 138.25 1.10 5.39 16 3 N -0.53 -14.60 11.27 -188.78 -2.13 -16.73 16 4 C -0.04 -1.06 11.84 83.30 0.99 -0.07 16 5 C -0.03 -0.60 6.57 40.73 0.27 -0.33 16 6 N -0.45 -9.20 3.13 -500.11 -1.57 -10.76 16 7 C 0.11 1.50 6.60 86.48 0.57 2.07 16 8 C -0.11 -2.27 4.66 30.73 0.14 -2.13 16 9 C -0.10 -2.27 2.54 -11.37 -0.03 -2.30 16 10 H 0.12 2.37 8.12 -2.38 -0.02 2.35 16 11 C 0.51 17.73 6.67 87.66 0.58 18.32 16 12 O -0.57 -24.89 14.39 -3.05 -0.04 -24.93 16 13 N -0.70 -26.04 4.89 -446.09 -2.18 -28.22 16 14 C 0.25 12.08 2.21 44.24 0.10 12.17 16 15 H 0.05 2.67 7.58 -2.38 -0.02 2.65 16 16 C -0.56 -27.33 8.47 25.60 0.22 -27.12 16 17 H 0.09 4.12 7.74 -2.92 -0.02 4.10 16 18 C 0.02 0.80 5.20 84.66 0.44 1.24 16 19 N -0.87 -47.59 9.51 21.45 0.20 -47.39 16 20 Si 0.98 39.54 29.54 68.60 2.03 41.57 16 21 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 22 H -0.29 -11.61 7.11 99.48 0.71 -10.90 16 23 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 24 C 0.41 20.75 2.81 71.98 0.20 20.95 16 25 F -0.20 -9.61 16.94 44.97 0.76 -8.85 16 26 F -0.15 -8.45 12.92 44.97 0.58 -7.87 16 27 F -0.22 -10.97 15.68 44.97 0.71 -10.26 16 28 C -0.03 -0.70 5.45 29.98 0.16 -0.54 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 0.64 7.95 -2.39 -0.02 0.62 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.18 3.97 8.06 -2.91 -0.02 3.94 16 33 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.10 2.09 7.77 -2.39 -0.02 2.07 16 36 H 0.06 1.53 8.12 -2.39 -0.02 1.51 16 37 H 0.41 12.70 8.26 -92.71 -0.77 11.93 16 38 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 39 H 0.07 1.91 8.10 -2.39 -0.02 1.90 16 40 H 0.11 2.16 7.95 -2.39 -0.02 2.14 16 Total: -1.00 -69.47 341.30 4.16 -65.32 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.33 Total: 20.48 kcal Atomic # 6 Polarization: 22.17 SS G_CDS: 5.47 Total: 27.65 kcal Atomic # 7 Polarization: -97.42 SS G_CDS: -5.67 Total: -103.10 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.04 Total: -24.93 kcal Atomic # 9 Polarization: -29.03 SS G_CDS: 2.05 Total: -26.98 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -69.47 4.16 -65.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928803884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.087 kcal (2) G-P(sol) polarization free energy of solvation -69.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds