Wall clock time and date at job start Tue Mar 31 2020 16:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47225 * 2 1 4 4 N 1.46504 * 109.47133 * 120.00426 * 2 1 3 5 5 C 1.38263 * 120.00228 * 85.00195 * 4 2 1 6 6 N 1.32434 * 119.82476 * 5.47617 * 5 4 2 7 7 C 1.31845 * 121.77362 * 179.97438 * 6 5 4 8 8 C 1.38370 * 121.21875 * 0.02929 * 7 6 5 9 9 C 1.38337 * 119.51174 * 359.97438 * 8 7 6 10 10 C 1.39979 * 118.36479 * 359.97438 * 9 8 7 11 11 C 1.47421 * 120.61003 * 179.97438 * 10 9 8 12 12 O 1.21606 * 120.00168 * 174.26481 * 11 10 9 13 13 N 1.34779 * 119.99901 * 354.26718 * 11 10 9 14 14 C 1.46496 * 119.99818 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.47621 * 35.00033 * 14 13 11 16 16 C 1.50703 * 109.47103 * 155.00043 * 14 13 11 17 17 H 1.08000 * 119.99762 * 359.97438 * 16 14 13 18 18 C 1.37879 * 120.00275 * 180.02562 * 16 14 13 19 19 N 1.31508 * 119.99750 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99994 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47199 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46952 * 119.99995 * 20 18 16 23 23 H 1.48500 * 109.46996 * 239.99792 * 20 18 16 24 24 C 1.53002 * 109.47448 * 274.99868 * 14 13 11 25 25 F 1.39891 * 109.46717 * 59.99960 * 24 14 13 26 26 F 1.39895 * 109.47096 * 180.02562 * 24 14 13 27 27 F 1.39897 * 109.46948 * 300.00167 * 24 14 13 28 28 H 1.09003 * 109.47541 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47053 * 299.99752 * 1 2 3 30 30 H 1.08997 * 109.47241 * 60.00036 * 1 2 3 31 31 H 1.09004 * 109.46784 * 240.00481 * 2 1 3 32 32 H 1.08996 * 109.47041 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.46982 * 300.00123 * 3 2 1 34 34 H 1.08997 * 109.46903 * 60.00156 * 3 2 1 35 35 H 0.96997 * 119.99781 * 264.99850 * 4 2 1 36 36 H 1.08001 * 119.39056 * 179.97438 * 7 6 5 37 37 H 1.08005 * 120.24903 * 179.97438 * 8 7 6 38 38 H 1.07993 * 120.81840 * 180.02562 * 9 8 7 39 39 H 0.96998 * 120.00004 * 0.02562 * 13 11 10 40 40 H 0.97000 * 120.00003 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1504 -2.0670 1.1942 6 7 1.9392 -2.7474 0.0779 7 6 2.0549 -4.0600 0.0324 8 6 2.4035 -4.7886 1.1559 9 6 2.6361 -4.1301 2.3501 10 6 2.5090 -2.7363 2.3766 11 6 2.7449 -1.9846 3.6227 12 8 2.7341 -0.7687 3.6106 13 7 2.9725 -2.6451 4.7753 14 6 3.2074 -1.8981 6.0134 15 1 2.6008 -0.9925 6.0121 16 6 2.8303 -2.7536 7.1954 17 1 2.4530 -3.7535 7.0399 18 6 2.9661 -2.2593 8.4754 19 7 3.4251 -1.0416 8.6648 20 14 2.4993 -3.3200 9.9405 21 1 2.0139 -4.6393 9.4619 22 1 3.6878 -3.5146 10.8093 23 1 1.4246 -2.6489 10.7151 24 6 4.6871 -1.5207 6.1084 25 9 5.0371 -0.7267 5.0112 26 9 4.9115 -0.8079 7.2911 27 9 5.4656 -2.6830 6.1102 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.2490 -0.1825 1.9894 36 1 1.8733 -4.5762 -0.8987 37 1 2.4935 -5.8635 1.1010 38 1 2.9098 -4.6777 3.2397 39 1 2.9814 -3.6150 4.7849 40 1 3.5202 -0.6937 9.5652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928810360.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:17 Heat of formation + Delta-G solvation = -134.195762 kcal Electronic energy + Delta-G solvation = -29646.731267 eV Core-core repulsion = 25047.224585 eV Total energy + Delta-G solvation = -4599.506682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.39854 -46.05324 -45.66103 -40.52223 -38.50015 -36.87929 -34.80649 -32.97795 -32.28770 -32.10619 -29.16470 -27.97301 -27.19408 -24.69580 -24.34559 -22.93247 -21.63681 -20.87159 -19.93509 -18.15218 -17.59383 -16.96119 -16.80503 -16.65503 -16.46379 -15.59499 -15.22936 -14.94652 -14.86029 -14.61818 -14.31548 -14.00996 -13.71138 -13.28710 -12.98389 -12.92132 -12.87775 -12.53906 -12.51360 -12.44554 -12.31619 -12.23628 -12.03933 -11.92823 -11.84994 -11.45927 -11.23753 -10.96103 -10.91546 -10.86229 -10.45261 -10.20725 -9.78530 -9.69648 -9.65547 -9.12593 -8.79083 -8.40829 -7.54721 -6.29215 -4.53441 0.96953 1.57049 3.14428 3.21834 3.25270 3.27355 3.39619 3.73916 4.11816 4.17361 4.51172 4.57544 4.85433 4.88125 4.92187 5.07875 5.11463 5.20557 5.29503 5.36703 5.57044 5.64120 5.76467 5.79386 5.80047 5.81628 5.91783 5.99533 6.14235 6.16167 6.24903 6.26909 6.58899 6.84698 7.01706 7.37300 7.41405 7.56947 7.65625 8.17769 8.34471 8.45203 8.79697 9.14722 10.62489 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.015380 B = 0.003909 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.056161 B = 7160.699679 C = 7746.878994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 C -0.161 4.161 4 N -0.697 5.697 5 C 0.454 3.546 6 N -0.552 5.552 7 C 0.172 3.828 8 C -0.253 4.253 9 C 0.004 3.996 10 C -0.259 4.259 11 C 0.567 3.433 12 O -0.545 6.545 13 N -0.702 5.702 14 C 0.245 3.755 15 H 0.087 0.913 16 C -0.553 4.553 17 H 0.078 0.922 18 C 0.065 3.935 19 N -0.839 5.839 20 Si 0.916 3.084 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.280 1.280 24 C 0.417 3.583 25 F -0.217 7.217 26 F -0.136 7.136 27 F -0.209 7.209 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.427 0.573 36 H 0.155 0.845 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.399 0.601 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.162 -3.585 -14.164 14.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.034 3.966 3 C -0.219 4.219 4 N -0.340 5.340 5 C 0.214 3.786 6 N -0.271 5.271 7 C 0.012 3.988 8 C -0.276 4.276 9 C -0.022 4.022 10 C -0.270 4.270 11 C 0.355 3.645 12 O -0.425 6.425 13 N -0.350 5.350 14 C 0.139 3.861 15 H 0.105 0.895 16 C -0.590 4.590 17 H 0.096 0.904 18 C -0.144 4.144 19 N -0.472 5.472 20 Si 0.742 3.258 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.205 1.205 24 C 0.361 3.639 25 F -0.199 7.199 26 F -0.117 7.117 27 F -0.191 7.191 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.279 0.721 36 H 0.172 0.828 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.234 0.766 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.361 -1.888 -14.802 15.295 hybrid contribution 0.490 -1.298 1.859 2.320 sum -2.871 -3.186 -12.942 13.635 Atomic orbital electron populations 1.22190 0.95856 1.02216 1.01672 1.20914 0.93773 0.92665 0.89259 1.22062 1.01826 0.95399 1.02600 1.45812 1.67528 1.02462 1.18161 1.18303 0.86744 0.86025 0.87503 1.67327 1.23811 1.09575 1.26369 1.22565 0.89762 0.88577 0.97898 1.21662 1.10651 1.01292 0.94032 1.21561 0.90124 0.92290 0.98260 1.20249 1.17398 0.94677 0.94629 1.17928 0.76280 0.87069 0.83208 1.90382 1.53512 1.13671 1.84951 1.45905 1.70674 1.10434 1.07963 1.19779 0.87065 0.96616 0.82622 0.89526 1.20904 1.47757 1.01407 0.88899 0.90360 1.25082 0.93998 0.95683 0.99606 1.70402 1.39140 1.15036 1.22611 0.86147 0.78317 0.80063 0.81259 1.19360 1.20520 1.20531 1.23115 0.93231 0.73916 0.73664 1.93068 1.94141 1.75903 1.56812 1.93407 1.95320 1.78374 1.44611 1.92989 1.78641 1.51039 1.96426 0.92388 0.92619 0.92082 0.89477 0.92042 0.91261 0.91959 0.72135 0.82785 0.84882 0.84634 0.76618 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.50 37.16 0.35 -1.50 16 2 C 0.14 1.75 3.24 -67.93 -0.22 1.53 16 3 C -0.16 -1.75 9.38 37.16 0.35 -1.40 16 4 N -0.70 -10.99 5.09 -53.74 -0.27 -11.27 16 5 C 0.45 7.33 7.46 -155.18 -1.16 6.17 16 6 N -0.55 -7.85 9.14 -12.20 -0.11 -7.97 16 7 C 0.17 1.97 11.16 -17.50 -0.20 1.77 16 8 C -0.25 -2.80 10.09 -39.50 -0.40 -3.20 16 9 C 0.00 0.05 9.63 -38.89 -0.37 -0.32 16 10 C -0.26 -4.30 5.91 -104.65 -0.62 -4.92 16 11 C 0.57 11.26 7.28 -12.52 -0.09 11.17 16 12 O -0.55 -12.08 12.25 5.27 0.06 -12.02 16 13 N -0.70 -14.16 4.94 -56.01 -0.28 -14.44 16 14 C 0.24 5.94 2.21 -69.08 -0.15 5.79 16 15 H 0.09 2.34 7.58 -51.93 -0.39 1.95 16 16 C -0.55 -13.79 8.46 -34.44 -0.29 -14.08 16 17 H 0.08 1.84 7.74 -52.49 -0.41 1.44 16 18 C 0.07 1.67 5.20 -17.82 -0.09 1.57 16 19 N -0.84 -22.60 9.50 55.43 0.53 -22.08 16 20 Si 0.92 19.75 29.54 -169.99 -5.02 14.73 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 C 0.42 10.53 2.81 37.16 0.10 10.64 16 25 F -0.22 -5.44 15.67 2.25 0.04 -5.41 16 26 F -0.14 -3.71 12.91 2.25 0.03 -3.69 16 27 F -0.21 -5.09 16.94 2.25 0.04 -5.05 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 1.10 7.45 -51.93 -0.39 0.72 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.43 7.56 5.11 -40.92 -0.21 7.35 16 36 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 37 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 38 H 0.14 1.56 6.55 -52.49 -0.34 1.21 16 39 H 0.40 6.95 6.67 -40.82 -0.27 6.67 16 40 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 344.00 15.07 5.18 5.18 Total: -1.00 -29.47 344.00 -7.12 -36.59 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -4.53 Total: 12.17 kcal Atomic # 6 Polarization: 16.02 SS G_CDS: -2.79 Total: 13.24 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.13 Total: -55.75 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.06 Total: -12.02 kcal Atomic # 9 Polarization: -14.25 SS G_CDS: 0.10 Total: -14.15 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.47 -7.12 -36.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928810360.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.607 kcal (2) G-P(sol) polarization free energy of solvation -29.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds