Wall clock time and date at job start Tue Mar 31 2020 16:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47225 * 2 1 4 4 N 1.46504 * 109.47133 * 120.00426 * 2 1 3 5 5 C 1.38263 * 120.00228 * 85.00195 * 4 2 1 6 6 N 1.32434 * 119.82476 * 5.47617 * 5 4 2 7 7 C 1.31845 * 121.77362 * 179.97438 * 6 5 4 8 8 C 1.38370 * 121.21875 * 0.02929 * 7 6 5 9 9 C 1.38337 * 119.51174 * 359.97438 * 8 7 6 10 10 C 1.39979 * 118.36479 * 359.97438 * 9 8 7 11 11 C 1.47421 * 120.61003 * 179.97438 * 10 9 8 12 12 O 1.21606 * 120.00168 * 174.26481 * 11 10 9 13 13 N 1.34779 * 119.99901 * 354.26718 * 11 10 9 14 14 C 1.46496 * 119.99818 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.47621 * 35.00033 * 14 13 11 16 16 C 1.50703 * 109.47103 * 155.00043 * 14 13 11 17 17 H 1.08000 * 119.99762 * 359.97438 * 16 14 13 18 18 C 1.37879 * 120.00275 * 180.02562 * 16 14 13 19 19 N 1.31508 * 119.99750 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99994 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47199 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46952 * 119.99995 * 20 18 16 23 23 H 1.48500 * 109.46996 * 239.99792 * 20 18 16 24 24 C 1.53002 * 109.47448 * 274.99868 * 14 13 11 25 25 F 1.39891 * 109.46717 * 59.99960 * 24 14 13 26 26 F 1.39895 * 109.47096 * 180.02562 * 24 14 13 27 27 F 1.39897 * 109.46948 * 300.00167 * 24 14 13 28 28 H 1.09003 * 109.47541 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47053 * 299.99752 * 1 2 3 30 30 H 1.08997 * 109.47241 * 60.00036 * 1 2 3 31 31 H 1.09004 * 109.46784 * 240.00481 * 2 1 3 32 32 H 1.08996 * 109.47041 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.46982 * 300.00123 * 3 2 1 34 34 H 1.08997 * 109.46903 * 60.00156 * 3 2 1 35 35 H 0.96997 * 119.99781 * 264.99850 * 4 2 1 36 36 H 1.08001 * 119.39056 * 179.97438 * 7 6 5 37 37 H 1.08005 * 120.24903 * 179.97438 * 8 7 6 38 38 H 1.07993 * 120.81840 * 180.02562 * 9 8 7 39 39 H 0.96998 * 120.00004 * 0.02562 * 13 11 10 40 40 H 0.97000 * 120.00003 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1504 -2.0670 1.1942 6 7 1.9392 -2.7474 0.0779 7 6 2.0549 -4.0600 0.0324 8 6 2.4035 -4.7886 1.1559 9 6 2.6361 -4.1301 2.3501 10 6 2.5090 -2.7363 2.3766 11 6 2.7449 -1.9846 3.6227 12 8 2.7341 -0.7687 3.6106 13 7 2.9725 -2.6451 4.7753 14 6 3.2074 -1.8981 6.0134 15 1 2.6008 -0.9925 6.0121 16 6 2.8303 -2.7536 7.1954 17 1 2.4530 -3.7535 7.0399 18 6 2.9661 -2.2593 8.4754 19 7 3.4251 -1.0416 8.6648 20 14 2.4993 -3.3200 9.9405 21 1 2.0139 -4.6393 9.4619 22 1 3.6878 -3.5146 10.8093 23 1 1.4246 -2.6489 10.7151 24 6 4.6871 -1.5207 6.1084 25 9 5.0371 -0.7267 5.0112 26 9 4.9115 -0.8079 7.2911 27 9 5.4656 -2.6830 6.1102 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.2490 -0.1825 1.9894 36 1 1.8733 -4.5762 -0.8987 37 1 2.4935 -5.8635 1.1010 38 1 2.9098 -4.6777 3.2397 39 1 2.9814 -3.6150 4.7849 40 1 3.5202 -0.6937 9.5652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928810360.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:17 Heat of formation + Delta-G solvation = -152.173156 kcal Electronic energy + Delta-G solvation = -29647.510825 eV Core-core repulsion = 25047.224585 eV Total energy + Delta-G solvation = -4600.286241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.44426 -48.08017 -47.75162 -41.72088 -39.92292 -37.92018 -36.54084 -34.64970 -33.41179 -33.32737 -30.61856 -29.38268 -28.10327 -26.63656 -25.57983 -24.14787 -23.21352 -22.17771 -21.30474 -19.70450 -18.95534 -18.76030 -18.69233 -18.43196 -17.84089 -17.17558 -16.85322 -16.43307 -16.12274 -15.78494 -15.44533 -15.22218 -15.14344 -14.99932 -14.76022 -14.50893 -14.46966 -14.33614 -14.12056 -14.00422 -13.87602 -13.75553 -13.48190 -13.11518 -13.08251 -12.88331 -12.76060 -12.67314 -12.40874 -12.22141 -11.92162 -11.58145 -11.19986 -11.10548 -10.79147 -10.71798 -10.32678 -10.14852 -8.64914 -8.23323 -6.54268 -0.13363 0.55964 1.45446 1.46864 1.59675 1.86782 2.10261 2.34877 2.40660 2.52198 2.91874 3.02808 3.54226 3.71635 3.81292 3.84879 3.93817 3.98324 4.13401 4.16907 4.22026 4.35834 4.42502 4.66424 4.71375 4.82355 4.89476 4.90333 4.99558 5.04484 5.22295 5.28816 5.32504 5.33501 5.50866 5.62262 5.67895 6.32859 6.44404 6.51316 6.63346 7.10494 7.19157 7.37466 8.69638 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.015380 B = 0.003909 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.056161 B = 7160.699679 C = 7746.878994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.136 3.864 3 C -0.156 4.156 4 N -0.710 5.710 5 C 0.438 3.562 6 N -0.561 5.561 7 C 0.177 3.823 8 C -0.239 4.239 9 C 0.002 3.998 10 C -0.291 4.291 11 C 0.562 3.438 12 O -0.578 6.578 13 N -0.698 5.698 14 C 0.253 3.747 15 H 0.050 0.950 16 C -0.561 4.561 17 H 0.093 0.907 18 C 0.016 3.984 19 N -0.874 5.874 20 Si 0.983 3.017 21 H -0.254 1.254 22 H -0.281 1.281 23 H -0.278 1.278 24 C 0.414 3.586 25 F -0.219 7.219 26 F -0.150 7.150 27 F -0.203 7.203 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.415 0.585 36 H 0.198 0.802 37 H 0.174 0.826 38 H 0.151 0.849 39 H 0.412 0.588 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.881 -6.255 -15.710 17.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.032 3.968 3 C -0.214 4.214 4 N -0.351 5.351 5 C 0.199 3.801 6 N -0.280 5.280 7 C 0.017 3.983 8 C -0.261 4.261 9 C -0.024 4.024 10 C -0.302 4.302 11 C 0.353 3.647 12 O -0.460 6.460 13 N -0.347 5.347 14 C 0.146 3.854 15 H 0.068 0.932 16 C -0.598 4.598 17 H 0.111 0.889 18 C -0.190 4.190 19 N -0.508 5.508 20 Si 0.807 3.193 21 H -0.178 1.178 22 H -0.207 1.207 23 H -0.204 1.204 24 C 0.358 3.642 25 F -0.201 7.201 26 F -0.131 7.131 27 F -0.185 7.185 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.264 0.736 36 H 0.215 0.785 37 H 0.191 0.809 38 H 0.169 0.831 39 H 0.250 0.750 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.092 -4.593 -16.395 17.511 hybrid contribution 0.717 -0.509 2.186 2.357 sum -3.375 -5.103 -14.208 15.469 Atomic orbital electron populations 1.22121 0.95014 1.01587 1.02407 1.21095 0.94406 0.93197 0.88148 1.22048 1.01256 0.94620 1.03482 1.45968 1.67744 1.02829 1.18525 1.18502 0.87250 0.86307 0.88047 1.67438 1.24194 1.11035 1.25338 1.23407 0.87412 0.87704 0.99786 1.22099 1.08282 1.03154 0.92568 1.21851 0.89539 0.90965 1.00066 1.20086 1.20962 0.96037 0.93164 1.18516 0.75257 0.86977 0.83995 1.90367 1.54785 1.15287 1.85593 1.45713 1.71169 1.10883 1.06953 1.19356 0.85746 0.95735 0.84535 0.93249 1.21246 1.47442 1.01956 0.89121 0.88909 1.25994 0.93756 0.96761 1.02470 1.70531 1.40364 1.16766 1.23145 0.85109 0.77763 0.78893 0.77564 1.17753 1.20672 1.20381 1.23293 0.93929 0.73887 0.73135 1.93060 1.94206 1.76046 1.56802 1.93378 1.95464 1.78776 1.45498 1.92985 1.78537 1.50574 1.96383 0.93623 0.93710 0.89431 0.89366 0.92897 0.88461 0.92901 0.73602 0.78518 0.80882 0.83113 0.75042 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.50 71.98 0.68 -2.74 16 2 C 0.14 3.40 3.24 44.99 0.15 3.55 16 3 C -0.16 -3.37 9.38 71.98 0.68 -2.69 16 4 N -0.71 -23.07 5.09 -323.93 -1.65 -24.72 16 5 C 0.44 14.09 7.46 133.64 1.00 15.09 16 6 N -0.56 -14.94 9.14 -192.52 -1.76 -16.70 16 7 C 0.18 3.38 11.16 84.72 0.95 4.32 16 8 C -0.24 -4.31 10.09 22.32 0.23 -4.09 16 9 C 0.00 0.05 9.63 22.72 0.22 0.27 16 10 C -0.29 -9.66 5.91 -19.88 -0.12 -9.77 16 11 C 0.56 23.03 7.28 86.66 0.63 23.66 16 12 O -0.58 -27.10 12.25 -4.05 -0.05 -27.15 16 13 N -0.70 -28.64 4.94 -449.37 -2.22 -30.86 16 14 C 0.25 12.67 2.21 44.25 0.10 12.77 16 15 H 0.05 2.84 7.58 -2.39 -0.02 2.82 16 16 C -0.56 -28.05 8.46 25.60 0.22 -27.84 16 17 H 0.09 4.26 7.74 -2.91 -0.02 4.24 16 18 C 0.02 0.80 5.20 84.66 0.44 1.24 16 19 N -0.87 -48.16 9.50 21.45 0.20 -47.95 16 20 Si 0.98 40.11 29.54 68.60 2.03 42.13 16 21 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 22 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 24 C 0.41 21.46 2.81 71.98 0.20 21.66 16 25 F -0.22 -11.36 15.67 44.97 0.70 -10.66 16 26 F -0.15 -8.45 12.91 44.97 0.58 -7.87 16 27 F -0.20 -9.93 16.94 44.97 0.76 -9.17 16 28 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.09 2.17 7.45 -2.38 -0.02 2.15 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.42 15.60 5.11 -94.24 -0.48 15.12 16 36 H 0.20 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.15 3.11 6.55 -2.91 -0.02 3.09 16 39 H 0.41 14.18 6.67 -92.71 -0.62 13.56 16 40 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -66.28 344.00 3.97 -62.31 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: 0.01 Total: 35.23 kcal Atomic # 6 Polarization: 30.05 SS G_CDS: 5.36 Total: 35.42 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -5.42 Total: -120.24 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.05 Total: -27.15 kcal Atomic # 9 Polarization: -29.75 SS G_CDS: 2.05 Total: -27.70 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.13 kcal Total: -66.28 3.97 -62.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928810360.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.861 kcal (2) G-P(sol) polarization free energy of solvation -66.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds