Wall clock time and date at job start Tue Mar 31 2020 15:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38223 * 119.61591 * 2 1 4 4 C 1.38625 * 119.16359 * 179.71062 * 3 2 1 5 5 C 1.50694 * 120.79586 * 180.27491 * 4 3 2 6 6 C 1.38682 * 118.41415 * 0.50839 * 4 3 2 7 7 C 1.50706 * 120.41452 * 179.78691 * 6 4 3 8 8 N 1.46498 * 109.47198 * 79.72152 * 7 6 4 9 9 C 1.34778 * 120.00083 * 179.97438 * 8 7 6 10 10 O 1.21585 * 119.99829 * 0.02562 * 9 8 7 11 11 N 1.34767 * 119.99941 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00039 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.47071 * 324.99759 * 12 11 9 14 14 C 1.50707 * 109.47297 * 205.00196 * 12 11 9 15 15 H 1.07994 * 119.99813 * 354.16608 * 14 12 11 16 16 C 1.37875 * 119.99980 * 174.17224 * 14 12 11 17 17 N 1.31513 * 120.00140 * 332.17027 * 16 14 12 18 18 Si 1.86805 * 119.99870 * 152.44736 * 16 14 12 19 19 H 1.48499 * 109.47052 * 179.72123 * 18 16 14 20 20 H 1.48496 * 109.46994 * 299.72093 * 18 16 14 21 21 H 1.48498 * 109.46721 * 59.72444 * 18 16 14 22 22 C 1.53002 * 109.47439 * 84.99663 * 12 11 9 23 23 F 1.39904 * 109.47165 * 176.81517 * 22 12 11 24 24 F 1.39898 * 109.47073 * 296.81712 * 22 12 11 25 25 F 1.39898 * 109.46934 * 56.81556 * 22 12 11 26 26 C 1.38177 * 119.16415 * 359.51397 * 6 4 3 27 27 N 1.31854 * 119.61817 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.46943 * 270.01690 * 1 2 3 29 29 H 1.08998 * 109.47252 * 30.02115 * 1 2 3 30 30 H 1.09004 * 109.46788 * 150.02540 * 1 2 3 31 31 H 1.08001 * 120.41828 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.47180 * 270.24192 * 5 4 3 33 33 H 1.09000 * 109.47283 * 30.24157 * 5 4 3 34 34 H 1.09002 * 109.47478 * 150.24366 * 5 4 3 35 35 H 1.08997 * 109.47039 * 319.72019 * 7 6 4 36 36 H 1.08997 * 109.46782 * 199.72341 * 7 6 4 37 37 H 0.96998 * 119.99978 * 0.02562 * 8 7 6 38 38 H 0.97003 * 120.00218 * 359.97438 * 11 9 8 39 39 H 0.96997 * 120.00172 * 354.74589 * 17 16 14 40 40 H 1.08001 * 119.61354 * 180.25186 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5763 1.1907 0.0061 5 6 4.3580 2.4790 0.0125 6 6 4.2266 -0.0342 0.0012 7 6 5.7323 -0.0986 0.0027 8 7 6.2291 0.1204 1.3633 9 6 7.5546 0.1060 1.6072 10 8 8.3379 -0.0883 0.6979 11 7 8.0116 0.3070 2.8590 12 6 9.4523 0.2919 3.1241 13 1 9.9331 -0.4419 2.4771 14 6 9.6941 -0.0748 4.5657 15 1 8.8595 -0.1840 5.2423 16 6 10.9808 -0.2705 5.0208 17 7 11.9164 -0.6791 4.1918 18 14 11.3933 0.0372 6.8166 19 1 12.8313 -0.2505 7.0504 20 1 11.1111 1.4557 7.1532 21 1 10.5655 -0.8492 7.6734 22 6 10.0368 1.6781 2.8454 23 9 11.3982 1.6836 3.1676 24 9 9.8769 1.9879 1.4905 25 9 9.3696 2.6304 3.6233 26 6 3.4766 -1.1947 0.0007 27 7 2.1587 -1.1463 0.0005 28 1 -0.3633 0.0003 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8903 -0.5135 31 1 1.6507 2.1373 0.0004 32 1 4.5473 2.7943 -1.0135 33 1 3.7852 3.2490 0.5294 34 1 5.3070 2.3258 0.5264 35 1 6.1296 0.6722 -0.6577 36 1 6.0542 -1.0790 -0.3483 37 1 5.6041 0.2751 2.0888 38 1 7.3866 0.4624 3.5844 39 1 11.6867 -0.9158 3.2797 40 1 3.9756 -2.1526 0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932897270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:43 Heat of formation + Delta-G solvation = -161.343722 kcal Electronic energy + Delta-G solvation = -28756.528451 eV Core-core repulsion = 24155.844545 eV Total energy + Delta-G solvation = -4600.683906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.75038 -46.30232 -46.20464 -40.80128 -39.38605 -35.90498 -34.77395 -33.66774 -32.93493 -32.48033 -29.42157 -28.02501 -27.68722 -25.08584 -24.45652 -23.04781 -21.83548 -20.82100 -20.41351 -18.57100 -17.57014 -17.18829 -17.12245 -17.03164 -16.57815 -15.90296 -15.49123 -15.17396 -14.87680 -14.65153 -14.06559 -13.87669 -13.58465 -13.46809 -13.28531 -13.21256 -13.06283 -12.88389 -12.85757 -12.73125 -12.54362 -12.50670 -12.47157 -12.43685 -12.40753 -12.33296 -11.55048 -11.30420 -11.06362 -10.77516 -10.21449 -9.88318 -9.69915 -9.64281 -9.56058 -9.10258 -8.93924 -8.45227 -8.33535 -6.79819 -4.50598 0.74313 0.98455 3.04099 3.30552 3.37763 3.54193 3.55586 3.62849 4.01879 4.20051 4.31630 4.32972 4.43378 4.58570 4.69140 4.72986 4.87682 5.05192 5.13272 5.24127 5.25324 5.33658 5.36006 5.45575 5.53660 5.58539 5.62313 5.72250 5.75716 5.83307 5.86330 6.11991 6.45317 6.56552 6.62283 7.03017 7.17289 7.52955 7.73910 8.10014 8.38751 8.51203 9.03756 9.18217 10.55212 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.020895 B = 0.002870 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.722381 B = 9752.294290 C =10140.994065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.132 3.868 3 C -0.178 4.178 4 C -0.017 4.017 5 C -0.126 4.126 6 C -0.165 4.165 7 C 0.188 3.812 8 N -0.748 5.748 9 C 0.698 3.302 10 O -0.584 6.584 11 N -0.719 5.719 12 C 0.255 3.745 13 H 0.079 0.921 14 C -0.650 4.650 15 H 0.073 0.927 16 C 0.053 3.947 17 N -0.846 5.846 18 Si 1.060 2.940 19 H -0.279 1.279 20 H -0.281 1.281 21 H -0.284 1.284 22 C 0.413 3.587 23 F -0.177 7.177 24 F -0.205 7.205 25 F -0.199 7.199 26 C 0.128 3.872 27 N -0.491 5.491 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.134 0.866 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.394 0.606 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.016 3.928 -6.308 20.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.005 4.005 3 C -0.198 4.198 4 C -0.025 4.025 5 C -0.182 4.182 6 C -0.168 4.168 7 C 0.063 3.937 8 N -0.406 5.406 9 C 0.398 3.602 10 O -0.461 6.461 11 N -0.372 5.372 12 C 0.148 3.852 13 H 0.096 0.904 14 C -0.686 4.686 15 H 0.091 0.909 16 C -0.161 4.161 17 N -0.474 5.474 18 Si 0.885 3.115 19 H -0.204 1.204 20 H -0.207 1.207 21 H -0.210 1.210 22 C 0.357 3.643 23 F -0.158 7.158 24 F -0.187 7.187 25 F -0.180 7.180 26 C -0.029 4.029 27 N -0.201 5.201 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.152 0.848 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.227 0.773 38 H 0.230 0.770 39 H 0.089 0.911 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -17.449 3.002 -6.128 18.735 hybrid contribution -1.285 1.267 -0.511 1.875 sum -18.733 4.268 -6.639 20.328 Atomic orbital electron populations 1.20724 0.88842 1.03447 1.03159 1.21344 0.97059 0.88368 0.93758 1.21848 0.94014 0.99364 1.04566 1.20296 0.93727 0.95426 0.93071 1.20948 1.00603 0.93363 1.03320 1.20847 0.96712 0.93923 1.05305 1.19797 0.87132 1.02778 0.83948 1.45120 1.05737 1.79647 1.10055 1.16077 0.82001 0.78193 0.83912 1.90927 1.54997 1.56448 1.43741 1.45090 1.08702 1.76006 1.07386 1.19534 0.77332 0.87625 1.00719 0.90395 1.21573 0.96553 1.58278 0.92160 0.90897 1.25916 0.92000 0.91520 1.06699 1.70749 1.37134 1.31413 1.08103 0.83711 0.76637 0.77201 0.73923 1.20358 1.20676 1.20964 1.23079 0.76935 0.92059 0.72203 1.93151 1.33290 1.96892 1.92465 1.93099 1.95444 1.94748 1.35376 1.93009 1.80882 1.68454 1.75703 1.22740 0.89072 0.98020 0.93114 1.67581 1.09716 1.29253 1.13560 0.90316 0.90736 0.90419 0.84792 0.90179 0.90880 0.90042 0.90607 0.90610 0.77319 0.76957 0.91091 0.82409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 10.17 36.01 0.37 -0.32 16 2 C 0.13 1.28 6.78 -82.59 -0.56 0.72 16 3 C -0.18 -1.58 9.45 -39.44 -0.37 -1.95 16 4 C -0.02 -0.16 5.92 -104.32 -0.62 -0.78 16 5 C -0.13 -1.10 9.36 36.00 0.34 -0.76 16 6 C -0.17 -1.76 5.27 -104.48 -0.55 -2.31 16 7 C 0.19 2.32 4.97 -5.19 -0.03 2.30 16 8 N -0.75 -10.47 4.97 -66.42 -0.33 -10.80 16 9 C 0.70 13.43 8.17 -86.93 -0.71 12.72 16 10 O -0.58 -13.52 14.91 5.29 0.08 -13.44 16 11 N -0.72 -14.41 4.94 -59.81 -0.30 -14.70 16 12 C 0.26 6.21 2.00 -69.08 -0.14 6.07 16 13 H 0.08 2.12 6.46 -51.93 -0.34 1.78 16 14 C -0.65 -16.59 8.32 -34.44 -0.29 -16.87 16 15 H 0.07 1.79 7.86 -52.49 -0.41 1.38 16 16 C 0.05 1.39 4.23 -17.82 -0.08 1.31 16 17 N -0.85 -23.72 12.35 55.43 0.68 -23.03 16 18 Si 1.06 23.34 29.99 -169.99 -5.10 18.24 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 22 C 0.41 10.23 2.82 37.16 0.10 10.33 16 23 F -0.18 -4.69 14.71 2.25 0.03 -4.66 16 24 F -0.20 -5.03 15.77 2.25 0.04 -5.00 16 25 F -0.20 -4.68 16.97 2.25 0.04 -4.64 16 26 C 0.13 1.39 10.83 -17.55 -0.19 1.20 16 27 N -0.49 -5.64 10.27 -9.47 -0.10 -5.74 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 34 H 0.08 0.85 6.53 -51.93 -0.34 0.51 16 35 H 0.08 0.98 7.40 -51.93 -0.38 0.60 16 36 H 0.08 0.96 8.02 -51.93 -0.42 0.54 16 37 H 0.39 4.65 8.48 -40.82 -0.35 4.30 16 38 H 0.40 6.89 8.54 -40.82 -0.35 6.54 16 39 H 0.28 7.91 7.25 -40.82 -0.30 7.62 16 40 H 0.16 1.48 8.04 -52.49 -0.42 1.06 16 LS Contribution 351.73 15.07 5.30 5.30 Total: -1.00 -31.54 351.73 -7.00 -38.54 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -4.63 Total: 8.28 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: -2.72 Total: 11.66 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.04 Total: -54.27 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.08 Total: -13.44 kcal Atomic # 9 Polarization: -14.41 SS G_CDS: 0.11 Total: -14.30 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.10 Total: 18.24 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.54 -7.00 -38.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932897270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.807 kcal (2) G-P(sol) polarization free energy of solvation -31.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds