Wall clock time and date at job start Tue Mar 31 2020 15:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38223 * 119.61591 * 2 1 4 4 C 1.38625 * 119.16359 * 179.71062 * 3 2 1 5 5 C 1.50694 * 120.79586 * 180.27491 * 4 3 2 6 6 C 1.38682 * 118.41415 * 0.50839 * 4 3 2 7 7 C 1.50706 * 120.41452 * 179.78691 * 6 4 3 8 8 N 1.46498 * 109.47198 * 79.72152 * 7 6 4 9 9 C 1.34778 * 120.00083 * 179.97438 * 8 7 6 10 10 O 1.21585 * 119.99829 * 0.02562 * 9 8 7 11 11 N 1.34767 * 119.99941 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00039 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.47071 * 324.99759 * 12 11 9 14 14 C 1.50707 * 109.47297 * 205.00196 * 12 11 9 15 15 H 1.07994 * 119.99813 * 354.16608 * 14 12 11 16 16 C 1.37875 * 119.99980 * 174.17224 * 14 12 11 17 17 N 1.31513 * 120.00140 * 332.17027 * 16 14 12 18 18 Si 1.86805 * 119.99870 * 152.44736 * 16 14 12 19 19 H 1.48499 * 109.47052 * 179.72123 * 18 16 14 20 20 H 1.48496 * 109.46994 * 299.72093 * 18 16 14 21 21 H 1.48498 * 109.46721 * 59.72444 * 18 16 14 22 22 C 1.53002 * 109.47439 * 84.99663 * 12 11 9 23 23 F 1.39904 * 109.47165 * 176.81517 * 22 12 11 24 24 F 1.39898 * 109.47073 * 296.81712 * 22 12 11 25 25 F 1.39898 * 109.46934 * 56.81556 * 22 12 11 26 26 C 1.38177 * 119.16415 * 359.51397 * 6 4 3 27 27 N 1.31854 * 119.61817 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.46943 * 270.01690 * 1 2 3 29 29 H 1.08998 * 109.47252 * 30.02115 * 1 2 3 30 30 H 1.09004 * 109.46788 * 150.02540 * 1 2 3 31 31 H 1.08001 * 120.41828 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.47180 * 270.24192 * 5 4 3 33 33 H 1.09000 * 109.47283 * 30.24157 * 5 4 3 34 34 H 1.09002 * 109.47478 * 150.24366 * 5 4 3 35 35 H 1.08997 * 109.47039 * 319.72019 * 7 6 4 36 36 H 1.08997 * 109.46782 * 199.72341 * 7 6 4 37 37 H 0.96998 * 119.99978 * 0.02562 * 8 7 6 38 38 H 0.97003 * 120.00218 * 359.97438 * 11 9 8 39 39 H 0.96997 * 120.00172 * 354.74589 * 17 16 14 40 40 H 1.08001 * 119.61354 * 180.25186 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5763 1.1907 0.0061 5 6 4.3580 2.4790 0.0125 6 6 4.2266 -0.0342 0.0012 7 6 5.7323 -0.0986 0.0027 8 7 6.2291 0.1204 1.3633 9 6 7.5546 0.1060 1.6072 10 8 8.3379 -0.0883 0.6979 11 7 8.0116 0.3070 2.8590 12 6 9.4523 0.2919 3.1241 13 1 9.9331 -0.4419 2.4771 14 6 9.6941 -0.0748 4.5657 15 1 8.8595 -0.1840 5.2423 16 6 10.9808 -0.2705 5.0208 17 7 11.9164 -0.6791 4.1918 18 14 11.3933 0.0372 6.8166 19 1 12.8313 -0.2505 7.0504 20 1 11.1111 1.4557 7.1532 21 1 10.5655 -0.8492 7.6734 22 6 10.0368 1.6781 2.8454 23 9 11.3982 1.6836 3.1676 24 9 9.8769 1.9879 1.4905 25 9 9.3696 2.6304 3.6233 26 6 3.4766 -1.1947 0.0007 27 7 2.1587 -1.1463 0.0005 28 1 -0.3633 0.0003 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8903 -0.5135 31 1 1.6507 2.1373 0.0004 32 1 4.5473 2.7943 -1.0135 33 1 3.7852 3.2490 0.5294 34 1 5.3070 2.3258 0.5264 35 1 6.1296 0.6722 -0.6577 36 1 6.0542 -1.0790 -0.3483 37 1 5.6041 0.2751 2.0888 38 1 7.3866 0.4624 3.5844 39 1 11.6867 -0.9158 3.2797 40 1 3.9756 -2.1526 0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932897270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:42 Heat of formation + Delta-G solvation = -182.163226 kcal Electronic energy + Delta-G solvation = -28757.431252 eV Core-core repulsion = 24155.844545 eV Total energy + Delta-G solvation = -4601.586708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.76069 -48.28966 -48.24380 -41.65832 -40.85062 -37.19471 -36.37475 -34.77895 -34.42552 -33.55755 -30.65057 -29.33211 -28.49946 -26.48314 -26.06140 -23.94870 -23.54852 -22.02718 -21.60790 -20.24786 -19.42325 -19.04060 -18.98288 -18.30443 -17.98723 -17.01771 -16.67384 -16.23638 -16.11517 -15.78255 -15.56774 -15.33966 -15.23192 -15.10369 -14.81481 -14.72655 -14.49932 -14.46107 -14.38180 -14.26112 -14.16481 -13.90839 -13.62457 -13.36461 -13.19296 -13.09724 -13.01768 -12.97754 -12.51914 -12.30823 -11.92458 -11.49106 -11.45054 -10.53177 -10.45927 -10.44936 -10.39028 -9.91560 -9.86542 -8.87306 -6.57975 -0.04281 0.23351 1.55017 1.62543 1.66341 1.84352 1.99176 2.28794 2.50554 2.71073 2.88121 3.22364 3.31680 3.46111 3.61027 3.61519 3.66515 3.80998 3.81391 3.92996 4.35141 4.46303 4.52194 4.59153 4.66466 4.67253 4.68772 4.79907 4.87482 5.03577 5.14251 5.21348 5.31362 5.34248 5.34831 5.39077 5.73781 5.95332 6.08699 6.30197 6.97874 7.03628 7.17014 7.53561 8.46462 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.020895 B = 0.002870 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.722381 B = 9752.294290 C =10140.994065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.123 3.877 3 C -0.175 4.175 4 C -0.019 4.019 5 C -0.123 4.123 6 C -0.171 4.171 7 C 0.192 3.808 8 N -0.724 5.724 9 C 0.697 3.303 10 O -0.625 6.625 11 N -0.715 5.715 12 C 0.262 3.738 13 H 0.044 0.956 14 C -0.654 4.654 15 H 0.084 0.916 16 C 0.009 3.991 17 N -0.873 5.873 18 Si 1.103 2.897 19 H -0.285 1.285 20 H -0.271 1.271 21 H -0.258 1.258 22 C 0.414 3.586 23 F -0.189 7.189 24 F -0.205 7.205 25 F -0.189 7.189 26 C 0.120 3.880 27 N -0.516 5.516 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.163 0.837 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.408 0.592 38 H 0.411 0.589 39 H 0.262 0.738 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.508 5.093 -5.327 22.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.014 4.014 3 C -0.194 4.194 4 C -0.028 4.028 5 C -0.179 4.179 6 C -0.174 4.174 7 C 0.068 3.932 8 N -0.381 5.381 9 C 0.397 3.603 10 O -0.506 6.506 11 N -0.368 5.368 12 C 0.153 3.847 13 H 0.062 0.938 14 C -0.689 4.689 15 H 0.102 0.898 16 C -0.199 4.199 17 N -0.502 5.502 18 Si 0.923 3.077 19 H -0.210 1.210 20 H -0.196 1.196 21 H -0.183 1.183 22 C 0.358 3.642 23 F -0.171 7.171 24 F -0.187 7.187 25 F -0.171 7.171 26 C -0.037 4.037 27 N -0.226 5.226 28 H 0.106 0.894 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.181 0.819 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.243 0.757 38 H 0.247 0.753 39 H 0.072 0.928 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -20.031 4.170 -5.141 21.096 hybrid contribution -0.637 0.925 -0.900 1.439 sum -20.668 5.096 -6.041 22.127 Atomic orbital electron populations 1.20819 0.86738 1.04422 1.04026 1.21919 0.98582 0.88207 0.92673 1.22137 0.93580 1.00308 1.03385 1.20479 0.94425 0.95291 0.92568 1.20943 0.99759 0.93423 1.03793 1.20616 0.95215 0.94605 1.06943 1.19801 0.88510 1.02275 0.82586 1.44934 1.03916 1.77850 1.11395 1.16211 0.83249 0.77854 0.83019 1.90900 1.56588 1.58254 1.44851 1.44842 1.07285 1.76334 1.08379 1.19126 0.79362 0.86604 0.99630 0.93803 1.21841 0.96880 1.57580 0.92647 0.89771 1.27264 0.92313 0.90553 1.09748 1.70868 1.37839 1.33824 1.07697 0.83163 0.76483 0.78051 0.70002 1.21016 1.19594 1.18286 1.23043 0.76445 0.92420 0.72287 1.93125 1.34375 1.96977 1.92574 1.93097 1.95392 1.94753 1.35410 1.93018 1.80564 1.68073 1.75422 1.22862 0.89259 0.98406 0.93220 1.67627 1.09859 1.30498 1.14626 0.89361 0.88415 0.90834 0.81928 0.89466 0.88959 0.91980 0.91162 0.91104 0.75668 0.75271 0.92759 0.81928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.09 10.17 71.24 0.72 -0.36 16 2 C 0.12 2.12 6.78 42.55 0.29 2.41 16 3 C -0.17 -2.59 9.45 22.36 0.21 -2.38 16 4 C -0.02 -0.34 5.92 -19.67 -0.12 -0.46 16 5 C -0.12 -1.88 9.36 71.23 0.67 -1.21 16 6 C -0.17 -3.47 5.27 -19.77 -0.10 -3.57 16 7 C 0.19 4.69 4.97 85.64 0.43 5.12 16 8 N -0.72 -19.79 4.97 -482.31 -2.40 -22.18 16 9 C 0.70 26.81 8.17 179.06 1.46 28.28 16 10 O -0.63 -29.60 14.91 -3.99 -0.06 -29.66 16 11 N -0.71 -28.37 4.94 -461.41 -2.28 -30.65 16 12 C 0.26 12.85 2.00 44.25 0.09 12.94 16 13 H 0.04 2.49 6.46 -2.39 -0.02 2.47 16 14 C -0.65 -33.05 8.32 25.60 0.21 -32.84 16 15 H 0.08 4.00 7.86 -2.91 -0.02 3.97 16 16 C 0.01 0.50 4.23 84.65 0.36 0.86 16 17 N -0.87 -49.82 12.35 21.45 0.26 -49.55 16 18 Si 1.10 45.91 29.99 68.60 2.06 47.96 16 19 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 21 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 22 C 0.41 20.57 2.82 71.98 0.20 20.77 16 23 F -0.19 -10.16 14.71 44.97 0.66 -9.50 16 24 F -0.20 -10.15 15.77 44.97 0.71 -9.44 16 25 F -0.19 -8.71 16.97 44.97 0.76 -7.95 16 26 C 0.12 2.51 10.83 84.67 0.92 3.43 16 27 N -0.52 -11.24 10.27 -183.89 -1.89 -13.13 16 28 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.10 0.57 8.08 -2.39 -0.02 0.56 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 1.05 8.10 -2.39 -0.02 1.03 16 34 H 0.06 1.21 6.53 -2.39 -0.02 1.19 16 35 H 0.07 1.82 7.40 -2.39 -0.02 1.80 16 36 H 0.07 1.82 8.02 -2.39 -0.02 1.80 16 37 H 0.41 9.03 8.48 -92.71 -0.79 8.24 16 38 H 0.41 13.72 8.54 -92.71 -0.79 12.93 16 39 H 0.26 15.52 7.25 -92.71 -0.67 14.85 16 40 H 0.16 3.04 8.04 -2.91 -0.02 3.02 16 Total: -1.00 -68.24 351.73 2.80 -65.44 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: -0.36 Total: 25.68 kcal Atomic # 6 Polarization: 27.64 SS G_CDS: 5.34 Total: 32.98 kcal Atomic # 7 Polarization: -109.21 SS G_CDS: -6.30 Total: -115.51 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.06 Total: -29.66 kcal Atomic # 9 Polarization: -29.02 SS G_CDS: 2.13 Total: -26.89 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.06 Total: 47.96 kcal Total: -68.24 2.80 -65.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932897270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.728 kcal (2) G-P(sol) polarization free energy of solvation -68.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds