Wall clock time and date at job start Tue Mar 31 2020 15:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38672 * 120.78588 * 2 1 4 4 C 1.38182 * 119.15991 * 180.02562 * 3 2 1 5 5 N 1.31886 * 120.76684 * 0.02562 * 4 3 2 6 6 C 1.31864 * 121.72521 * 359.68003 * 5 4 3 7 7 C 1.38227 * 120.75810 * 0.58779 * 6 5 4 8 8 C 1.50701 * 120.41417 * 179.72400 * 7 6 5 9 9 N 1.46497 * 109.47495 * 4.08422 * 8 7 6 10 10 C 1.46499 * 119.99658 * 268.39871 * 9 8 7 11 11 C 1.34770 * 120.00291 * 88.39354 * 9 8 7 12 12 O 1.21586 * 120.00121 * 0.02562 * 11 9 8 13 13 N 1.34783 * 119.99995 * 180.02562 * 11 9 8 14 14 C 1.46500 * 119.99857 * 179.97438 * 13 11 9 15 15 H 1.08999 * 109.47044 * 325.00522 * 14 13 11 16 16 C 1.50693 * 109.47126 * 204.99875 * 14 13 11 17 17 H 1.07999 * 120.00441 * 245.40214 * 16 14 13 18 18 C 1.37879 * 119.99888 * 65.39929 * 16 14 13 19 19 N 1.31518 * 120.00128 * 185.77334 * 18 16 14 20 20 Si 1.86802 * 120.00017 * 6.05415 * 18 16 14 21 21 H 1.48494 * 109.47001 * 267.10940 * 20 18 16 22 22 H 1.48503 * 109.46908 * 27.10773 * 20 18 16 23 23 H 1.48499 * 109.47179 * 147.10607 * 20 18 16 24 24 C 1.53005 * 109.46886 * 85.00470 * 14 13 11 25 25 F 1.39898 * 109.46968 * 175.72781 * 24 14 13 26 26 F 1.39908 * 109.47018 * 295.72617 * 24 14 13 27 27 F 1.39899 * 109.47630 * 55.72101 * 24 14 13 28 28 H 1.09007 * 109.46771 * 272.25090 * 1 2 3 29 29 H 1.08994 * 109.47439 * 32.25280 * 1 2 3 30 30 H 1.09000 * 109.47446 * 152.25769 * 1 2 3 31 31 H 1.07995 * 120.42434 * 359.97438 * 3 2 1 32 32 H 1.07995 * 119.62078 * 179.97438 * 4 3 2 33 33 H 1.08000 * 119.61814 * 180.28633 * 6 5 4 34 34 H 1.09000 * 109.47433 * 244.07776 * 8 7 6 35 35 H 1.09001 * 109.46738 * 124.07962 * 8 7 6 36 36 H 1.09006 * 109.47181 * 264.49418 * 10 9 8 37 37 H 1.09004 * 109.47637 * 24.49175 * 10 9 8 38 38 H 1.09003 * 109.47236 * 144.49271 * 10 9 8 39 39 H 0.96998 * 119.99556 * 0.02562 * 13 11 9 40 40 H 0.97001 * 119.99941 * 180.27751 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 -0.0005 5 7 4.2403 0.0002 -0.0016 6 6 3.5983 -1.1516 0.0042 7 6 2.2166 -1.1909 -0.0007 8 6 1.4909 -2.5116 -0.0003 9 7 2.4627 -3.6029 0.1039 10 6 3.0058 -4.2184 -1.1095 11 6 2.8572 -4.0405 1.3160 12 8 2.4061 -3.5299 2.3231 13 7 3.7517 -5.0441 1.4119 14 6 4.1809 -5.5194 2.7295 15 1 4.2246 -4.6791 3.4223 16 6 5.5453 -6.1490 2.6165 17 1 5.6698 -7.2054 2.8031 18 6 6.6349 -5.3763 2.2747 19 7 7.8030 -5.9429 2.0649 20 14 6.4537 -3.5238 2.1173 21 1 6.1534 -3.1740 0.7058 22 1 5.3449 -3.0591 2.9891 23 1 7.7186 -2.8657 2.5321 24 6 3.1822 -6.5563 3.2478 25 9 3.6421 -7.0813 4.4602 26 9 1.9381 -5.9475 3.4452 27 9 3.0530 -7.5880 2.3118 28 1 -0.3633 0.0404 1.0270 29 1 -0.3634 0.8690 -0.5484 30 1 -0.3634 -0.9095 -0.4784 31 1 1.6967 2.1378 -0.0004 32 1 4.1583 2.0754 -0.0010 33 1 4.1586 -2.0749 0.0078 34 1 0.9255 -2.6158 -0.9264 35 1 0.8082 -2.5508 0.8485 36 1 2.4309 -5.1121 -1.3522 37 1 2.9426 -3.5103 -1.9358 38 1 4.0481 -4.4908 -0.9435 39 1 4.1117 -5.4512 0.6084 40 1 8.5705 -5.3989 1.8284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932905766.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:38 Heat of formation + Delta-G solvation = -141.512434 kcal Electronic energy + Delta-G solvation = -30062.776708 eV Core-core repulsion = 25462.952751 eV Total energy + Delta-G solvation = -4599.823957 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.05737 -46.56228 -46.55075 -40.60312 -39.45278 -35.90574 -34.76762 -34.15445 -32.55304 -31.52515 -29.13644 -28.09570 -27.23508 -25.63005 -24.98677 -22.77238 -21.82450 -21.16594 -19.57710 -18.46243 -17.54569 -17.45461 -16.95406 -16.65177 -16.57102 -16.40769 -15.75173 -15.04148 -14.90758 -14.63935 -14.32830 -13.80069 -13.47785 -13.43859 -13.30288 -13.02703 -13.01512 -12.92470 -12.87279 -12.82192 -12.74899 -12.74399 -12.70026 -12.63283 -12.52969 -12.04196 -11.78266 -11.50534 -11.08340 -10.64373 -10.09669 -9.89015 -9.67214 -9.46492 -9.44195 -8.97380 -8.90253 -8.66739 -8.30925 -6.50874 -4.64585 1.13183 1.23894 2.87930 3.13640 3.26417 3.37832 3.53881 3.79667 3.93854 4.13420 4.28301 4.45501 4.61034 4.69867 4.89541 4.97101 4.99361 5.04888 5.14952 5.18375 5.23728 5.31597 5.37712 5.38806 5.44739 5.52708 5.60585 5.74493 5.74977 5.87059 6.05332 6.23007 6.35438 6.61591 6.74907 6.90981 7.12020 7.28560 7.90150 8.04859 8.48664 8.52585 9.02977 9.06962 10.56839 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.013799 B = 0.005095 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.640381 B = 5494.349072 C = 6664.432508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.041 4.041 3 C -0.176 4.176 4 C 0.092 3.908 5 N -0.487 5.487 6 C 0.117 3.883 7 C -0.149 4.149 8 C 0.181 3.819 9 N -0.641 5.641 10 C 0.075 3.925 11 C 0.692 3.308 12 O -0.581 6.581 13 N -0.729 5.729 14 C 0.218 3.782 15 H 0.092 0.908 16 C -0.536 4.536 17 H 0.095 0.905 18 C 0.098 3.902 19 N -0.861 5.861 20 Si 0.876 3.124 21 H -0.270 1.270 22 H -0.256 1.256 23 H -0.285 1.285 24 C 0.441 3.559 25 F -0.185 7.185 26 F -0.193 7.193 27 F -0.191 7.191 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.132 0.868 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.398 0.602 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.335 9.453 -8.584 17.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.049 4.049 3 C -0.196 4.196 4 C -0.065 4.065 5 N -0.196 5.196 6 C -0.040 4.040 7 C -0.152 4.152 8 C 0.056 3.944 9 N -0.380 5.380 10 C -0.069 4.069 11 C 0.394 3.606 12 O -0.458 6.458 13 N -0.386 5.386 14 C 0.114 3.886 15 H 0.109 0.891 16 C -0.574 4.574 17 H 0.113 0.887 18 C -0.112 4.112 19 N -0.494 5.494 20 Si 0.702 3.298 21 H -0.196 1.196 22 H -0.180 1.180 23 H -0.211 1.211 24 C 0.385 3.615 25 F -0.166 7.166 26 F -0.174 7.174 27 F -0.172 7.172 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.150 0.850 32 H 0.170 0.830 33 H 0.169 0.831 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.235 0.765 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.550 9.787 -7.864 17.060 hybrid contribution -0.717 0.620 -0.488 1.067 sum -12.267 10.407 -8.352 18.126 Atomic orbital electron populations 1.20833 0.90239 1.03142 1.03123 1.20072 0.96633 0.92245 0.95986 1.21946 0.95609 0.98336 1.03704 1.22741 0.91809 0.96271 0.95663 1.67733 1.41309 0.98499 1.12058 1.22717 0.91402 0.96160 0.93720 1.21282 0.95797 0.96198 1.01952 1.20049 0.89943 0.81297 1.03088 1.47117 1.47498 1.38001 1.05380 1.21799 0.99582 0.98472 0.87010 1.16388 0.80103 0.81025 0.83133 1.90896 1.59746 1.60867 1.34313 1.46994 1.44402 1.36380 1.10811 1.20161 0.91767 0.92802 0.83871 0.89075 1.20814 0.87474 0.98417 1.50696 0.88674 1.24909 0.94688 0.99088 0.92475 1.69880 1.00617 1.36785 1.42114 0.86829 0.78656 0.84421 0.79898 1.19580 1.17982 1.21069 1.21537 0.81446 0.83029 0.75446 1.93104 1.88841 1.87917 1.46767 1.93148 1.46096 1.83028 1.95168 1.93075 1.96262 1.62067 1.65846 0.90238 0.91083 0.90953 0.84980 0.83032 0.83127 0.89183 0.88250 0.92201 0.90928 0.91003 0.76489 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 9.67 36.01 0.35 -0.61 16 2 C -0.04 -0.48 5.92 -104.32 -0.62 -1.10 16 3 C -0.18 -1.98 9.83 -39.44 -0.39 -2.37 16 4 C 0.09 1.21 11.18 -17.55 -0.20 1.02 16 5 N -0.49 -8.28 10.36 -13.25 -0.14 -8.42 16 6 C 0.12 1.99 10.33 -17.54 -0.18 1.81 16 7 C -0.15 -2.12 5.89 -104.48 -0.61 -2.73 16 8 C 0.18 2.35 4.44 -5.19 -0.02 2.33 16 9 N -0.64 -9.84 1.72 -188.74 -0.32 -10.17 16 10 C 0.07 0.89 9.48 59.85 0.57 1.45 16 11 C 0.69 13.78 7.20 -86.92 -0.63 13.16 16 12 O -0.58 -13.47 14.51 5.29 0.08 -13.40 16 13 N -0.73 -15.00 3.26 -59.81 -0.19 -15.20 16 14 C 0.22 5.07 1.41 -69.08 -0.10 4.98 16 15 H 0.09 2.30 6.01 -51.93 -0.31 1.99 16 16 C -0.54 -13.77 8.61 -34.44 -0.30 -14.07 16 17 H 0.10 2.65 7.97 -52.49 -0.42 2.23 16 18 C 0.10 2.57 5.47 -17.82 -0.10 2.47 16 19 N -0.86 -23.72 13.96 55.43 0.77 -22.94 16 20 Si 0.88 21.03 26.46 -169.99 -4.50 16.53 16 21 H -0.27 -6.20 7.04 56.52 0.40 -5.80 16 22 H -0.26 -6.46 6.28 56.52 0.36 -6.10 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 C 0.44 9.85 2.79 37.16 0.10 9.95 16 25 F -0.18 -4.16 16.90 2.25 0.04 -4.13 16 26 F -0.19 -4.29 15.80 2.25 0.04 -4.25 16 27 F -0.19 -4.11 16.97 2.25 0.04 -4.07 16 28 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 30 H 0.07 0.52 6.84 -51.93 -0.35 0.16 16 31 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 32 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.15 2.82 6.15 -52.49 -0.32 2.49 16 34 H 0.09 0.84 7.71 -51.93 -0.40 0.44 16 35 H 0.10 1.40 7.41 -51.93 -0.39 1.01 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.69 8.03 -51.93 -0.42 0.28 16 38 H 0.07 0.92 6.66 -51.93 -0.35 0.58 16 39 H 0.40 7.50 6.44 -40.82 -0.26 7.23 16 40 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 344.62 15.07 5.19 5.19 Total: -1.00 -31.99 344.62 -5.63 -37.62 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -4.52 Total: 6.94 kcal Atomic # 6 Polarization: 18.40 SS G_CDS: -2.12 Total: 16.29 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.12 Total: -56.73 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.08 Total: -13.40 kcal Atomic # 9 Polarization: -12.56 SS G_CDS: 0.11 Total: -12.45 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.50 Total: 16.53 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.99 -5.63 -37.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932905766.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.891 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds