Wall clock time and date at job start Tue Mar 31 2020 15:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38672 * 120.78588 * 2 1 4 4 C 1.38182 * 119.15991 * 180.02562 * 3 2 1 5 5 N 1.31886 * 120.76684 * 0.02562 * 4 3 2 6 6 C 1.31864 * 121.72521 * 359.68003 * 5 4 3 7 7 C 1.38227 * 120.75810 * 0.58779 * 6 5 4 8 8 C 1.50701 * 120.41417 * 179.72400 * 7 6 5 9 9 N 1.46497 * 109.47495 * 4.08422 * 8 7 6 10 10 C 1.46499 * 119.99658 * 268.39871 * 9 8 7 11 11 C 1.34770 * 120.00291 * 88.39354 * 9 8 7 12 12 O 1.21586 * 120.00121 * 0.02562 * 11 9 8 13 13 N 1.34783 * 119.99995 * 180.02562 * 11 9 8 14 14 C 1.46500 * 119.99857 * 179.97438 * 13 11 9 15 15 H 1.08999 * 109.47044 * 325.00522 * 14 13 11 16 16 C 1.50693 * 109.47126 * 204.99875 * 14 13 11 17 17 H 1.07999 * 120.00441 * 245.40214 * 16 14 13 18 18 C 1.37879 * 119.99888 * 65.39929 * 16 14 13 19 19 N 1.31518 * 120.00128 * 185.77334 * 18 16 14 20 20 Si 1.86802 * 120.00017 * 6.05415 * 18 16 14 21 21 H 1.48494 * 109.47001 * 267.10940 * 20 18 16 22 22 H 1.48503 * 109.46908 * 27.10773 * 20 18 16 23 23 H 1.48499 * 109.47179 * 147.10607 * 20 18 16 24 24 C 1.53005 * 109.46886 * 85.00470 * 14 13 11 25 25 F 1.39898 * 109.46968 * 175.72781 * 24 14 13 26 26 F 1.39908 * 109.47018 * 295.72617 * 24 14 13 27 27 F 1.39899 * 109.47630 * 55.72101 * 24 14 13 28 28 H 1.09007 * 109.46771 * 272.25090 * 1 2 3 29 29 H 1.08994 * 109.47439 * 32.25280 * 1 2 3 30 30 H 1.09000 * 109.47446 * 152.25769 * 1 2 3 31 31 H 1.07995 * 120.42434 * 359.97438 * 3 2 1 32 32 H 1.07995 * 119.62078 * 179.97438 * 4 3 2 33 33 H 1.08000 * 119.61814 * 180.28633 * 6 5 4 34 34 H 1.09000 * 109.47433 * 244.07776 * 8 7 6 35 35 H 1.09001 * 109.46738 * 124.07962 * 8 7 6 36 36 H 1.09006 * 109.47181 * 264.49418 * 10 9 8 37 37 H 1.09004 * 109.47637 * 24.49175 * 10 9 8 38 38 H 1.09003 * 109.47236 * 144.49271 * 10 9 8 39 39 H 0.96998 * 119.99556 * 0.02562 * 13 11 9 40 40 H 0.97001 * 119.99941 * 180.27751 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 -0.0005 5 7 4.2403 0.0002 -0.0016 6 6 3.5983 -1.1516 0.0042 7 6 2.2166 -1.1909 -0.0007 8 6 1.4909 -2.5116 -0.0003 9 7 2.4627 -3.6029 0.1039 10 6 3.0058 -4.2184 -1.1095 11 6 2.8572 -4.0405 1.3160 12 8 2.4061 -3.5299 2.3231 13 7 3.7517 -5.0441 1.4119 14 6 4.1809 -5.5194 2.7295 15 1 4.2246 -4.6791 3.4223 16 6 5.5453 -6.1490 2.6165 17 1 5.6698 -7.2054 2.8031 18 6 6.6349 -5.3763 2.2747 19 7 7.8030 -5.9429 2.0649 20 14 6.4537 -3.5238 2.1173 21 1 6.1534 -3.1740 0.7058 22 1 5.3449 -3.0591 2.9891 23 1 7.7186 -2.8657 2.5321 24 6 3.1822 -6.5563 3.2478 25 9 3.6421 -7.0813 4.4602 26 9 1.9381 -5.9475 3.4452 27 9 3.0530 -7.5880 2.3118 28 1 -0.3633 0.0404 1.0270 29 1 -0.3634 0.8690 -0.5484 30 1 -0.3634 -0.9095 -0.4784 31 1 1.6967 2.1378 -0.0004 32 1 4.1583 2.0754 -0.0010 33 1 4.1586 -2.0749 0.0078 34 1 0.9255 -2.6158 -0.9264 35 1 0.8082 -2.5508 0.8485 36 1 2.4309 -5.1121 -1.3522 37 1 2.9426 -3.5103 -1.9358 38 1 4.0481 -4.4908 -0.9435 39 1 4.1117 -5.4512 0.6084 40 1 8.5705 -5.3989 1.8284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932905766.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:37 Heat of formation + Delta-G solvation = -161.477101 kcal Electronic energy + Delta-G solvation = -30063.642441 eV Core-core repulsion = 25462.952751 eV Total energy + Delta-G solvation = -4600.689690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.88069 -48.38718 -48.36128 -41.76863 -40.80135 -37.31097 -36.47486 -35.15640 -34.43880 -32.67918 -30.78629 -29.01325 -28.21327 -26.97041 -26.81897 -23.93348 -23.10973 -22.59604 -21.11482 -20.18721 -19.34323 -19.05021 -18.58620 -18.37346 -17.81449 -17.76130 -17.04940 -16.47052 -16.21780 -15.90794 -15.54249 -15.35597 -15.26936 -14.97953 -14.84997 -14.82581 -14.62594 -14.56756 -14.53937 -14.41896 -13.89406 -13.76039 -13.71708 -13.65228 -13.53072 -13.44335 -13.13907 -13.00062 -12.54064 -12.32791 -12.09766 -11.92419 -11.35580 -11.02279 -10.52036 -10.36942 -10.27407 -9.93088 -9.65747 -8.58714 -6.74122 0.12160 0.27400 1.15820 1.27821 1.38777 1.53506 1.87820 2.09167 2.22891 2.67316 2.77542 3.05163 3.19948 3.37983 3.46681 3.61135 3.73806 3.83270 3.94211 4.05929 4.20564 4.26071 4.47953 4.52458 4.58091 4.62568 4.68259 4.80815 4.82923 4.84626 4.92846 5.01249 5.22397 5.31603 5.39954 5.51552 5.75883 5.80644 5.93863 6.40210 6.93759 6.96512 7.00585 7.50925 8.53312 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.013799 B = 0.005095 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.640381 B = 5494.349072 C = 6664.432508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.041 4.041 3 C -0.166 4.166 4 C 0.078 3.922 5 N -0.529 5.529 6 C 0.083 3.917 7 C -0.157 4.157 8 C 0.180 3.820 9 N -0.633 5.633 10 C 0.069 3.931 11 C 0.690 3.310 12 O -0.618 6.618 13 N -0.728 5.728 14 C 0.227 3.773 15 H 0.072 0.928 16 C -0.535 4.535 17 H 0.071 0.929 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.924 3.076 21 H -0.257 1.257 22 H -0.277 1.277 23 H -0.287 1.287 24 C 0.446 3.554 25 F -0.187 7.187 26 F -0.190 7.190 27 F -0.184 7.184 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.172 0.828 32 H 0.177 0.823 33 H 0.123 0.877 34 H 0.135 0.865 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.407 0.593 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.770 11.266 -10.339 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.049 4.049 3 C -0.185 4.185 4 C -0.078 4.078 5 N -0.239 5.239 6 C -0.073 4.073 7 C -0.160 4.160 8 C 0.057 3.943 9 N -0.370 5.370 10 C -0.073 4.073 11 C 0.392 3.608 12 O -0.498 6.498 13 N -0.386 5.386 14 C 0.121 3.879 15 H 0.089 0.911 16 C -0.573 4.573 17 H 0.089 0.911 18 C -0.133 4.133 19 N -0.530 5.530 20 Si 0.750 3.250 21 H -0.182 1.182 22 H -0.202 1.202 23 H -0.213 1.213 24 C 0.390 3.610 25 F -0.168 7.168 26 F -0.171 7.171 27 F -0.166 7.166 28 H 0.099 0.901 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.189 0.811 32 H 0.194 0.806 33 H 0.141 0.859 34 H 0.153 0.847 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.119 0.881 38 H 0.076 0.924 39 H 0.246 0.754 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.996 11.596 -9.686 20.596 hybrid contribution -0.046 0.131 0.038 0.144 sum -14.043 11.727 -9.648 20.684 Atomic orbital electron populations 1.20932 0.87302 1.05086 1.03774 1.20547 0.98654 0.91428 0.94298 1.22389 0.94897 0.99894 1.01322 1.23265 0.93307 0.95962 0.95293 1.67622 1.42906 0.99581 1.13744 1.22460 0.92581 0.95526 0.96708 1.21385 0.94852 0.97669 1.02142 1.20330 0.89181 0.79999 1.04834 1.47127 1.47166 1.38028 1.04691 1.22047 0.98993 1.00042 0.86221 1.16420 0.79696 0.80481 0.84237 1.90864 1.60933 1.61840 1.36147 1.46446 1.45099 1.37131 1.09934 1.19734 0.91144 0.92233 0.84754 0.91082 1.20746 0.88811 0.97259 1.50520 0.91113 1.25266 0.94461 1.01226 0.92390 1.69924 1.01315 1.37902 1.43842 0.86095 0.77386 0.81402 0.80072 1.18160 1.20216 1.21322 1.21313 0.81321 0.82922 0.75439 1.93099 1.88903 1.87917 1.46909 1.93153 1.45767 1.83032 1.95154 1.93085 1.96217 1.61678 1.65575 0.90061 0.88537 0.89688 0.81081 0.80578 0.85909 0.84726 0.89231 0.89927 0.88134 0.92381 0.75412 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.67 71.24 0.69 -0.70 16 2 C -0.04 -0.83 5.92 -19.67 -0.12 -0.95 16 3 C -0.17 -3.17 9.83 22.36 0.22 -2.95 16 4 C 0.08 1.92 11.18 84.67 0.95 2.87 16 5 N -0.53 -17.84 10.36 -195.84 -2.03 -19.87 16 6 C 0.08 2.82 10.33 84.69 0.87 3.69 16 7 C -0.16 -4.19 5.89 -19.77 -0.12 -4.30 16 8 C 0.18 4.24 4.44 85.63 0.38 4.63 16 9 N -0.63 -18.51 1.72 -869.31 -1.49 -20.00 16 10 C 0.07 1.49 9.48 127.77 1.21 2.70 16 11 C 0.69 27.28 7.20 179.05 1.29 28.57 16 12 O -0.62 -28.79 14.51 -3.99 -0.06 -28.85 16 13 N -0.73 -30.01 3.26 -461.41 -1.50 -31.52 16 14 C 0.23 10.74 1.41 44.24 0.06 10.80 16 15 H 0.07 3.69 6.01 -2.39 -0.01 3.68 16 16 C -0.54 -28.08 8.61 25.60 0.22 -27.86 16 17 H 0.07 4.04 7.97 -2.91 -0.02 4.02 16 18 C 0.07 3.90 5.47 84.65 0.46 4.37 16 19 N -0.89 -50.09 13.96 21.45 0.30 -49.79 16 20 Si 0.92 44.72 26.46 68.60 1.82 46.54 16 21 H -0.26 -11.75 7.04 99.48 0.70 -11.05 16 22 H -0.28 -14.32 6.28 99.48 0.63 -13.70 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 24 C 0.45 19.94 2.79 71.98 0.20 20.14 16 25 F -0.19 -8.47 16.90 44.97 0.76 -7.71 16 26 F -0.19 -8.36 15.80 44.97 0.71 -7.65 16 27 F -0.18 -7.83 16.97 44.97 0.76 -7.07 16 28 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.10 0.71 8.12 -2.39 -0.02 0.69 16 30 H 0.08 0.82 6.84 -2.39 -0.02 0.81 16 31 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 32 H 0.18 3.18 8.06 -2.91 -0.02 3.15 16 33 H 0.12 4.68 6.15 -2.91 -0.02 4.67 16 34 H 0.14 1.94 7.71 -2.39 -0.02 1.92 16 35 H 0.09 2.34 7.41 -2.39 -0.02 2.32 16 36 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.10 1.63 8.03 -2.39 -0.02 1.61 16 38 H 0.06 1.43 6.66 -2.39 -0.02 1.42 16 39 H 0.41 15.27 6.44 -92.71 -0.60 14.68 16 40 H 0.28 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -71.75 344.62 6.01 -65.74 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.42 Total: 19.17 kcal Atomic # 6 Polarization: 34.69 SS G_CDS: 6.32 Total: 41.01 kcal Atomic # 7 Polarization: -116.46 SS G_CDS: -4.73 Total: -121.18 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.06 Total: -28.85 kcal Atomic # 9 Polarization: -24.67 SS G_CDS: 2.23 Total: -22.43 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.82 Total: 46.54 kcal Total: -71.75 6.01 -65.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932905766.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.737 kcal (2) G-P(sol) polarization free energy of solvation -71.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds