Wall clock time and date at job start Tue Mar 31 2020 16:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29872 * 124.83001 * 2 1 4 4 C 1.36122 * 108.76768 * 179.97438 * 3 2 1 5 5 C 1.39265 * 133.77123 * 180.02562 * 4 3 2 6 6 C 1.39187 * 119.47037 * 179.97438 * 5 4 3 7 7 C 1.47718 * 119.95584 * 179.97438 * 6 5 4 8 8 O 1.21573 * 119.99684 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00531 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00200 * 180.02562 * 9 7 6 11 11 H 1.09002 * 110.88857 * 34.29247 * 10 9 7 12 12 C 1.54915 * 111.03417 * 270.38731 * 10 9 7 13 13 N 1.47418 * 104.83107 * 204.89999 * 12 10 9 14 14 C 1.36939 * 125.65017 * 204.17029 * 13 12 10 15 15 H 1.07998 * 119.99534 * 359.97438 * 14 13 12 16 16 C 1.38807 * 120.00342 * 179.97438 * 14 13 12 17 17 N 1.31620 * 119.99981 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00118 * 180.02562 * 16 14 13 19 19 H 1.48509 * 109.46841 * 90.00217 * 18 16 14 20 20 H 1.48504 * 109.47165 * 210.00004 * 18 16 14 21 21 H 1.48496 * 109.47045 * 330.00457 * 18 16 14 22 22 C 1.47029 * 108.70495 * 24.13113 * 13 12 10 23 23 C 1.54327 * 107.26790 * 358.93814 * 22 13 12 24 24 H 1.09001 * 110.71543 * 96.16961 * 23 22 13 25 25 O 1.42898 * 110.71639 * 219.44351 * 23 22 13 26 26 C 1.40049 * 120.09903 * 0.26302 * 6 5 4 27 27 C 1.36539 * 120.46888 * 359.49618 * 26 6 5 28 28 C 1.38901 * 120.18603 * 0.48075 * 27 26 6 29 29 O 1.34240 * 124.83912 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.46703 * 90.00299 * 1 2 3 31 31 H 1.09000 * 109.46489 * 209.99938 * 1 2 3 32 32 H 1.08994 * 109.47167 * 330.00050 * 1 2 3 33 33 H 1.08003 * 120.26667 * 0.02562 * 5 4 3 34 34 H 0.97001 * 119.99748 * 359.97438 * 9 7 6 35 35 H 1.08995 * 110.36257 * 323.74273 * 12 10 9 36 36 H 1.08997 * 110.36405 * 86.05992 * 12 10 9 37 37 H 0.96998 * 120.00328 * 179.97438 * 17 16 14 38 38 H 1.08993 * 109.88066 * 239.51797 * 22 13 12 39 39 H 1.08996 * 110.00664 * 118.42784 * 22 13 12 40 40 H 0.96701 * 114.00092 * 293.52074 * 25 23 22 41 41 H 1.08002 * 119.76975 * 179.74432 * 26 6 5 42 42 H 1.07997 * 119.90198 * 180.23824 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2488 1.0661 0.0000 4 6 3.5569 0.6894 0.0006 5 6 4.7609 1.3893 0.0013 6 6 5.9619 0.6857 0.0023 7 6 7.2453 1.4171 0.0025 8 8 7.2520 2.6329 0.0022 9 7 8.4087 0.7369 0.0029 10 6 9.6815 1.4624 0.0037 11 1 9.6022 2.3857 0.5776 12 6 10.1604 1.7465 -1.4419 13 7 11.6237 1.8891 -1.3335 14 6 12.4248 2.5802 -2.2028 15 1 11.9907 3.0795 -3.0564 16 6 13.7948 2.6389 -1.9870 17 7 14.3238 2.0299 -0.9470 18 14 14.8875 3.5822 -3.1726 19 1 15.0067 4.9919 -2.7209 20 1 16.2345 2.9581 -3.2076 21 1 14.2899 3.5468 -4.5315 22 6 12.0804 1.1672 -0.1368 23 6 10.8302 0.5695 0.5426 24 1 10.6863 -0.4679 0.2409 25 8 10.9283 0.6752 1.9643 26 6 5.9555 -0.7148 -0.0030 27 6 4.7755 -1.4017 0.0012 28 6 3.5678 -0.7155 0.0007 29 8 2.2739 -1.1018 0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3632 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 4.7628 2.4693 0.0019 34 1 8.4034 -0.2331 0.0035 35 1 9.9079 0.9120 -2.0960 36 1 9.7158 2.6694 -1.8143 37 1 15.2812 2.0706 -0.7964 38 1 12.5786 1.8569 0.5445 39 1 12.7651 0.3685 -0.4217 40 1 11.6317 0.1361 2.3512 41 1 6.8905 -1.2553 -0.0063 42 1 4.7812 -2.4817 0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077203566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:22 Heat of formation + Delta-G solvation = -8.872091 kcal Electronic energy + Delta-G solvation = -27312.545786 eV Core-core repulsion = 23260.330286 eV Total energy + Delta-G solvation = -4052.215500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.63695 -40.10815 -38.32305 -37.39669 -35.27510 -35.09653 -34.17371 -32.24240 -31.62213 -31.11231 -28.94548 -28.10761 -26.98048 -24.85205 -23.95255 -22.75145 -21.96429 -21.20566 -20.53096 -20.24899 -18.56199 -17.90738 -17.25071 -17.20578 -16.80299 -16.45286 -15.84906 -15.22962 -14.79871 -14.57798 -14.49097 -14.20262 -14.03089 -13.92812 -13.74302 -13.40273 -13.23903 -13.02366 -12.75803 -12.68906 -12.40478 -12.10638 -11.89801 -11.67676 -11.51583 -11.27079 -10.90485 -10.84126 -10.82098 -10.18733 -9.98147 -9.92730 -9.85611 -9.36369 -9.18227 -8.87889 -8.85999 -8.64497 -6.92776 -5.77313 -3.11839 0.33843 0.47298 1.98800 2.05161 2.72892 3.04468 3.39255 3.44133 3.45497 3.47916 3.57081 4.09906 4.40804 4.45861 4.56177 4.59423 4.63315 4.66139 4.83474 4.92982 4.99829 5.12436 5.18149 5.42003 5.45127 5.54767 5.63630 5.65280 5.76583 5.80494 5.85192 5.87856 6.04507 6.09341 6.15436 6.46359 6.60273 6.84217 7.21396 7.30373 7.45180 7.58959 7.72615 8.08972 8.15956 8.28597 9.14120 9.74107 10.36778 11.34508 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.027485 B = 0.002237 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.505013 B =12511.679581 C =12998.453099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.245 3.755 3 N -0.473 5.473 4 C 0.014 3.986 5 C 0.005 3.995 6 C -0.127 4.127 7 C 0.560 3.440 8 O -0.529 6.529 9 N -0.707 5.707 10 C 0.138 3.862 11 H 0.106 0.894 12 C 0.130 3.870 13 N -0.600 5.600 14 C -0.228 4.228 15 H 0.081 0.919 16 C -0.008 4.008 17 N -0.924 5.924 18 Si 0.916 3.084 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.154 3.846 23 C 0.068 3.932 24 H 0.058 0.942 25 O -0.563 6.563 26 C -0.062 4.062 27 C -0.096 4.096 28 C 0.026 3.974 29 O -0.213 6.213 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.152 0.848 34 H 0.396 0.604 35 H 0.025 0.975 36 H 0.052 0.948 37 H 0.253 0.747 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.377 0.623 41 H 0.146 0.854 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.857 -11.613 4.188 26.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.033 3.967 3 N -0.202 5.202 4 C -0.097 4.097 5 C -0.015 4.015 6 C -0.132 4.132 7 C 0.347 3.653 8 O -0.406 6.406 9 N -0.358 5.358 10 C 0.033 3.967 11 H 0.124 0.876 12 C 0.002 3.998 13 N -0.328 5.328 14 C -0.356 4.356 15 H 0.099 0.901 16 C -0.204 4.204 17 N -0.572 5.572 18 Si 0.746 3.254 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.206 1.206 22 C 0.028 3.972 23 C 0.008 3.992 24 H 0.076 0.924 25 O -0.368 6.368 26 C -0.081 4.081 27 C -0.115 4.115 28 C -0.025 4.025 29 O -0.105 6.105 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.125 0.875 33 H 0.170 0.830 34 H 0.231 0.769 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.224 0.776 41 H 0.163 0.837 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -24.308 -9.656 4.074 26.472 hybrid contribution 1.384 -1.186 -0.530 1.899 sum -22.924 -10.843 3.544 25.605 Atomic orbital electron populations 1.20438 0.80652 1.05698 1.05312 1.26532 0.96710 0.78124 0.95333 1.70661 1.00760 1.28887 1.19933 1.19715 0.92093 0.91193 1.06729 1.20430 0.87230 1.01302 0.92546 1.19846 0.93613 0.93506 1.06251 1.17938 0.83312 0.87225 0.76871 1.90820 1.87306 1.13151 1.49277 1.45810 1.05586 1.09934 1.74484 1.22318 0.79991 0.95981 0.98382 0.87565 1.21853 0.86320 0.99161 0.92429 1.44244 1.00108 1.60698 1.27704 1.19090 0.88179 1.24944 1.03378 0.90111 1.24820 0.96670 1.00596 0.98339 1.69917 1.11090 1.47266 1.28909 0.86060 0.79886 0.79370 0.80096 1.21465 1.21654 1.20617 1.21823 0.90507 0.96133 0.88746 1.23457 0.97368 0.97298 0.81059 0.92427 1.86472 1.58183 1.72044 1.20059 1.20899 0.97797 0.92889 0.96515 1.19507 0.86942 1.00613 1.04398 1.20509 0.83892 0.94492 1.03626 1.84472 1.15289 1.36364 1.74360 0.88219 0.88796 0.87523 0.83015 0.76866 0.95779 0.93001 0.93643 0.92053 0.93255 0.77622 0.83679 0.83991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 36.01 0.38 0.14 16 2 C 0.24 2.27 8.23 -13.10 -0.11 2.16 16 3 N -0.47 -5.82 11.34 -8.72 -0.10 -5.92 16 4 C 0.01 0.18 7.23 -84.73 -0.61 -0.44 16 5 C 0.00 0.06 9.64 -38.85 -0.37 -0.31 16 6 C -0.13 -1.60 5.87 -104.99 -0.62 -2.22 16 7 C 0.56 8.74 7.77 -12.39 -0.10 8.65 16 8 O -0.53 -10.38 16.02 5.30 0.08 -10.29 16 9 N -0.71 -10.28 5.17 -52.71 -0.27 -10.55 16 10 C 0.14 2.56 3.09 -65.78 -0.20 2.36 16 11 H 0.11 2.28 7.63 -51.93 -0.40 1.88 16 12 C 0.13 2.75 6.93 -2.53 -0.02 2.73 16 13 N -0.60 -15.23 3.39 -170.08 -0.58 -15.81 16 14 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 15 H 0.08 2.19 7.83 -52.49 -0.41 1.77 16 16 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 17 N -0.92 -26.65 10.31 55.49 0.57 -26.08 16 18 Si 0.92 22.08 29.55 -169.99 -5.02 17.06 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 C 0.15 3.58 5.15 -3.06 -0.02 3.57 16 23 C 0.07 1.22 3.96 -24.90 -0.10 1.12 16 24 H 0.06 0.88 8.00 -51.93 -0.42 0.47 16 25 O -0.56 -9.45 13.39 -35.23 -0.47 -9.92 16 26 C -0.06 -0.58 9.47 -39.52 -0.37 -0.95 16 27 C -0.10 -0.85 9.99 -39.95 -0.40 -1.25 16 28 C 0.03 0.29 7.43 -38.49 -0.29 0.00 16 29 O -0.21 -2.18 10.77 3.84 0.04 -2.14 16 30 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.15 2.09 7.64 -52.48 -0.40 1.68 16 34 H 0.40 4.34 6.54 -40.82 -0.27 4.08 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.06 1.63 7.29 -51.93 -0.38 1.25 16 39 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 40 H 0.38 4.74 9.12 45.56 0.42 5.16 16 41 H 0.15 0.93 6.37 -52.49 -0.33 0.60 16 42 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 357.30 15.07 5.38 5.38 Total: -1.00 -36.07 357.30 -7.68 -43.76 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.25 Total: 5.79 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: -3.07 Total: 8.73 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.38 Total: -58.35 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.35 Total: -22.36 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.07 -7.68 -43.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077203566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.884 kcal (2) G-P(sol) polarization free energy of solvation -36.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds