Wall clock time and date at job start Tue Mar 31 2020 16:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29872 * 124.83001 * 2 1 4 4 C 1.36122 * 108.76768 * 179.97438 * 3 2 1 5 5 C 1.39265 * 133.77123 * 180.02562 * 4 3 2 6 6 C 1.39187 * 119.47037 * 179.97438 * 5 4 3 7 7 C 1.47718 * 119.95584 * 179.97438 * 6 5 4 8 8 O 1.21573 * 119.99684 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00531 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00200 * 180.02562 * 9 7 6 11 11 H 1.09002 * 110.88857 * 34.29247 * 10 9 7 12 12 C 1.54915 * 111.03417 * 270.38731 * 10 9 7 13 13 N 1.47418 * 104.83107 * 204.89999 * 12 10 9 14 14 C 1.36939 * 125.65017 * 204.17029 * 13 12 10 15 15 H 1.07998 * 119.99534 * 359.97438 * 14 13 12 16 16 C 1.38807 * 120.00342 * 179.97438 * 14 13 12 17 17 N 1.31620 * 119.99981 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00118 * 180.02562 * 16 14 13 19 19 H 1.48509 * 109.46841 * 90.00217 * 18 16 14 20 20 H 1.48504 * 109.47165 * 210.00004 * 18 16 14 21 21 H 1.48496 * 109.47045 * 330.00457 * 18 16 14 22 22 C 1.47029 * 108.70495 * 24.13113 * 13 12 10 23 23 C 1.54327 * 107.26790 * 358.93814 * 22 13 12 24 24 H 1.09001 * 110.71543 * 96.16961 * 23 22 13 25 25 O 1.42898 * 110.71639 * 219.44351 * 23 22 13 26 26 C 1.40049 * 120.09903 * 0.26302 * 6 5 4 27 27 C 1.36539 * 120.46888 * 359.49618 * 26 6 5 28 28 C 1.38901 * 120.18603 * 0.48075 * 27 26 6 29 29 O 1.34240 * 124.83912 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.46703 * 90.00299 * 1 2 3 31 31 H 1.09000 * 109.46489 * 209.99938 * 1 2 3 32 32 H 1.08994 * 109.47167 * 330.00050 * 1 2 3 33 33 H 1.08003 * 120.26667 * 0.02562 * 5 4 3 34 34 H 0.97001 * 119.99748 * 359.97438 * 9 7 6 35 35 H 1.08995 * 110.36257 * 323.74273 * 12 10 9 36 36 H 1.08997 * 110.36405 * 86.05992 * 12 10 9 37 37 H 0.96998 * 120.00328 * 179.97438 * 17 16 14 38 38 H 1.08993 * 109.88066 * 239.51797 * 22 13 12 39 39 H 1.08996 * 110.00664 * 118.42784 * 22 13 12 40 40 H 0.96701 * 114.00092 * 293.52074 * 25 23 22 41 41 H 1.08002 * 119.76975 * 179.74432 * 26 6 5 42 42 H 1.07997 * 119.90198 * 180.23824 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2488 1.0661 0.0000 4 6 3.5569 0.6894 0.0006 5 6 4.7609 1.3893 0.0013 6 6 5.9619 0.6857 0.0023 7 6 7.2453 1.4171 0.0025 8 8 7.2520 2.6329 0.0022 9 7 8.4087 0.7369 0.0029 10 6 9.6815 1.4624 0.0037 11 1 9.6022 2.3857 0.5776 12 6 10.1604 1.7465 -1.4419 13 7 11.6237 1.8891 -1.3335 14 6 12.4248 2.5802 -2.2028 15 1 11.9907 3.0795 -3.0564 16 6 13.7948 2.6389 -1.9870 17 7 14.3238 2.0299 -0.9470 18 14 14.8875 3.5822 -3.1726 19 1 15.0067 4.9919 -2.7209 20 1 16.2345 2.9581 -3.2076 21 1 14.2899 3.5468 -4.5315 22 6 12.0804 1.1672 -0.1368 23 6 10.8302 0.5695 0.5426 24 1 10.6863 -0.4679 0.2409 25 8 10.9283 0.6752 1.9643 26 6 5.9555 -0.7148 -0.0030 27 6 4.7755 -1.4017 0.0012 28 6 3.5678 -0.7155 0.0007 29 8 2.2739 -1.1018 0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3632 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 4.7628 2.4693 0.0019 34 1 8.4034 -0.2331 0.0035 35 1 9.9079 0.9120 -2.0960 36 1 9.7158 2.6694 -1.8143 37 1 15.2812 2.0706 -0.7964 38 1 12.5786 1.8569 0.5445 39 1 12.7651 0.3685 -0.4217 40 1 11.6317 0.1361 2.3512 41 1 6.8905 -1.2553 -0.0063 42 1 4.7812 -2.4817 0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077203566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:21 Heat of formation + Delta-G solvation = -39.694514 kcal Electronic energy + Delta-G solvation = -27313.882346 eV Core-core repulsion = 23260.330286 eV Total energy + Delta-G solvation = -4053.552060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.41152 -41.36219 -39.69548 -38.53628 -36.66928 -36.08207 -35.66786 -33.74570 -32.64778 -32.00258 -30.35866 -29.33618 -28.49583 -26.49777 -25.18883 -23.53024 -22.73914 -22.57740 -22.09080 -21.77928 -19.67701 -19.00194 -18.71870 -18.26128 -18.01529 -17.58159 -17.19445 -16.71424 -16.13307 -16.04279 -15.74633 -15.36866 -15.13858 -14.91048 -14.62229 -14.46931 -14.31891 -14.12521 -14.07293 -13.75897 -13.54261 -13.42894 -13.16003 -13.14995 -12.76443 -12.75150 -12.71560 -12.37353 -12.09451 -11.88831 -11.65732 -11.53900 -11.32187 -10.89582 -10.77084 -10.32983 -9.96323 -9.66196 -8.96820 -7.89070 -5.25996 -0.48087 -0.40137 1.24457 1.35344 1.45504 1.47875 1.56065 1.65670 1.84567 2.46889 2.58599 2.76432 3.12707 3.28836 3.31411 3.49282 3.53655 3.82087 3.87272 3.88726 3.97843 4.06702 4.14416 4.20901 4.44712 4.54966 4.57928 4.62261 4.63014 4.79506 4.82670 4.89664 4.94347 5.01097 5.06364 5.22087 5.31971 5.37953 5.41007 5.45601 5.67493 6.13772 6.42234 6.45655 6.89375 7.04736 7.09617 7.69165 8.31157 9.20520 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.027485 B = 0.002237 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.505013 B =12511.679581 C =12998.453099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.257 3.743 3 N -0.517 5.517 4 C -0.009 4.009 5 C -0.018 4.018 6 C -0.132 4.132 7 C 0.561 3.439 8 O -0.578 6.578 9 N -0.689 5.689 10 C 0.152 3.848 11 H 0.072 0.928 12 C 0.130 3.870 13 N -0.622 5.622 14 C -0.247 4.247 15 H 0.080 0.920 16 C -0.062 4.062 17 N -0.947 5.947 18 Si 0.980 3.020 19 H -0.289 1.289 20 H -0.289 1.289 21 H -0.269 1.269 22 C 0.160 3.840 23 C 0.093 3.907 24 H 0.102 0.898 25 O -0.569 6.569 26 C -0.053 4.053 27 C -0.079 4.079 28 C 0.018 3.982 29 O -0.212 6.212 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.129 0.871 34 H 0.419 0.581 35 H 0.047 0.953 36 H 0.032 0.968 37 H 0.249 0.751 38 H 0.019 0.981 39 H 0.029 0.971 40 H 0.397 0.603 41 H 0.183 0.817 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.573 -14.824 3.990 29.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.046 3.954 3 N -0.248 5.248 4 C -0.119 4.119 5 C -0.038 4.038 6 C -0.137 4.137 7 C 0.349 3.651 8 O -0.459 6.459 9 N -0.341 5.341 10 C 0.046 3.954 11 H 0.090 0.910 12 C 0.003 3.997 13 N -0.350 5.350 14 C -0.375 4.375 15 H 0.098 0.902 16 C -0.255 4.255 17 N -0.596 5.596 18 Si 0.808 3.192 19 H -0.216 1.216 20 H -0.215 1.215 21 H -0.194 1.194 22 C 0.034 3.966 23 C 0.032 3.968 24 H 0.120 0.880 25 O -0.377 6.377 26 C -0.071 4.071 27 C -0.098 4.098 28 C -0.033 4.033 29 O -0.104 6.104 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.147 0.853 34 H 0.258 0.742 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.038 0.962 39 H 0.047 0.953 40 H 0.248 0.752 41 H 0.200 0.800 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -26.053 -12.922 3.887 29.340 hybrid contribution 1.775 -0.185 -0.447 1.840 sum -24.278 -13.107 3.440 27.804 Atomic orbital electron populations 1.20804 0.76889 1.07335 1.07027 1.27644 0.98319 0.77202 0.92254 1.70663 1.01027 1.30577 1.22487 1.19840 0.92169 0.92414 1.07510 1.20312 0.88349 1.00534 0.94595 1.19591 0.91311 0.94924 1.07853 1.18415 0.84380 0.86760 0.75512 1.90800 1.88015 1.15594 1.51466 1.45479 1.03797 1.10847 1.73962 1.21788 0.82008 0.95545 0.96094 0.91013 1.21945 0.84188 0.98989 0.94546 1.44512 1.01788 1.60752 1.27929 1.19424 0.88987 1.25205 1.03925 0.90208 1.25641 0.97937 1.01812 1.00125 1.70116 1.10913 1.48298 1.30236 0.85062 0.77907 0.77658 0.78582 1.21625 1.21527 1.19385 1.21648 0.92747 0.94481 0.87691 1.23155 0.93687 0.98658 0.81262 0.88011 1.86441 1.59116 1.73029 1.19097 1.21223 0.99674 0.91070 0.95171 1.19967 0.85521 1.02424 1.01840 1.20893 0.85007 0.93882 1.03567 1.84501 1.14958 1.36599 1.74377 0.86204 0.86211 0.86727 0.85296 0.74178 0.93510 0.94998 0.94119 0.96232 0.95261 0.75244 0.80021 0.79974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.31 10.51 71.24 0.75 0.44 16 2 C 0.26 4.36 8.23 88.40 0.73 5.09 16 3 N -0.52 -12.78 11.34 -296.35 -3.36 -16.14 16 4 C -0.01 -0.23 7.23 39.28 0.28 0.05 16 5 C -0.02 -0.49 9.64 22.75 0.22 -0.28 16 6 C -0.13 -3.22 5.87 -20.10 -0.12 -3.34 16 7 C 0.56 17.47 7.77 86.75 0.67 18.14 16 8 O -0.58 -23.87 16.02 -3.94 -0.06 -23.93 16 9 N -0.69 -18.78 5.17 -438.94 -2.27 -21.04 16 10 C 0.15 5.58 3.09 46.38 0.14 5.73 16 11 H 0.07 3.18 7.63 -2.39 -0.02 3.16 16 12 C 0.13 5.53 6.93 86.86 0.60 6.13 16 13 N -0.62 -32.19 3.39 -692.00 -2.35 -34.54 16 14 C -0.25 -14.03 10.28 84.03 0.86 -13.17 16 15 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 16 C -0.06 -3.52 5.49 84.86 0.47 -3.05 16 17 N -0.95 -55.92 10.31 21.65 0.22 -55.70 16 18 Si 0.98 46.00 29.55 68.60 2.03 48.02 16 19 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 20 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 C 0.16 7.58 5.15 86.73 0.45 8.03 16 23 C 0.09 3.16 3.96 31.78 0.13 3.29 16 24 H 0.10 2.67 8.00 -2.39 -0.02 2.65 16 25 O -0.57 -18.12 13.39 -148.98 -1.99 -20.11 16 26 C -0.05 -0.80 9.47 22.31 0.21 -0.59 16 27 C -0.08 -1.11 9.99 22.03 0.22 -0.89 16 28 C 0.02 0.36 7.43 22.98 0.17 0.53 16 29 O -0.21 -3.85 10.77 -9.18 -0.10 -3.95 16 30 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.13 3.99 7.64 -2.91 -0.02 3.97 16 34 H 0.42 7.50 6.54 -92.71 -0.61 6.89 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 38 H 0.02 1.07 7.29 -2.39 -0.02 1.06 16 39 H 0.03 1.49 7.51 -2.39 -0.02 1.47 16 40 H 0.40 9.12 9.12 -74.06 -0.68 8.45 16 41 H 0.18 1.33 6.37 -2.91 -0.02 1.31 16 42 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 Total: -1.00 -84.13 357.30 -2.29 -86.42 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -0.19 Total: 14.87 kcal Atomic # 6 Polarization: 20.32 SS G_CDS: 5.78 Total: 26.11 kcal Atomic # 7 Polarization: -119.67 SS G_CDS: -7.75 Total: -127.43 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: -2.16 Total: -47.99 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -84.13 -2.29 -86.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077203566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.727 kcal (2) G-P(sol) polarization free energy of solvation -84.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds