Wall clock time and date at job start Tue Mar 31 2020 16:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30093 * 124.87862 * 2 1 4 4 C 1.35584 * 108.83809 * 180.02562 * 3 2 1 5 5 C 1.40292 * 106.62269 * 0.22627 * 4 3 2 6 6 C 1.38584 * 119.92355 * 180.33540 * 5 4 3 7 7 C 1.38209 * 120.21731 * 359.72683 * 6 5 4 8 8 C 1.38190 * 120.67483 * 0.04109 * 7 6 5 9 9 C 1.39363 * 120.23742 * 359.95752 * 8 7 6 10 10 C 1.47433 * 120.29707 * 179.97438 * 9 8 7 11 11 O 1.21601 * 120.00469 * 179.97438 * 10 9 8 12 12 N 1.34778 * 119.99843 * 0.02562 * 10 9 8 13 13 C 1.46505 * 120.00074 * 180.02562 * 12 10 9 14 14 H 1.09000 * 110.91310 * 37.44311 * 13 12 10 15 15 C 1.54914 * 111.00202 * 273.54598 * 13 12 10 16 16 N 1.47426 * 104.82992 * 204.91694 * 15 13 12 17 17 C 1.36936 * 125.64483 * 204.16378 * 16 15 13 18 18 H 1.08004 * 120.00405 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00093 * 179.97438 * 17 16 15 20 20 N 1.31626 * 119.99909 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00506 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46967 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47375 * 120.00211 * 21 19 17 24 24 H 1.48496 * 109.47606 * 240.00311 * 21 19 17 25 25 C 1.47018 * 108.70517 * 24.12623 * 16 15 13 26 26 C 1.54325 * 107.40412 * 358.86539 * 25 16 15 27 27 H 1.09000 * 110.72188 * 96.24097 * 26 25 16 28 28 O 1.42893 * 110.72271 * 219.52456 * 26 25 16 29 29 O 1.34149 * 124.88067 * 180.61868 * 2 1 3 30 30 H 1.08999 * 109.46942 * 89.99972 * 1 2 3 31 31 H 1.08997 * 109.47271 * 210.00298 * 1 2 3 32 32 H 1.09004 * 109.47103 * 329.99826 * 1 2 3 33 33 H 1.07999 * 119.89081 * 179.74215 * 6 5 4 34 34 H 1.08003 * 119.66913 * 180.02562 * 7 6 5 35 35 H 1.07991 * 119.88189 * 179.97438 * 8 7 6 36 36 H 0.96998 * 120.00184 * 359.97438 * 12 10 9 37 37 H 1.08999 * 110.37121 * 86.07429 * 15 13 12 38 38 H 1.09003 * 110.36718 * 323.75334 * 15 13 12 39 39 H 0.96997 * 120.00493 * 180.02562 * 20 19 17 40 40 H 1.09002 * 109.88241 * 118.36067 * 25 16 15 41 41 H 1.09000 * 109.88049 * 239.37196 * 25 16 15 42 42 H 0.96708 * 113.99585 * 298.54470 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2509 1.0672 0.0000 4 6 3.5540 0.6926 -0.0006 5 6 3.5682 -0.7102 -0.0062 6 6 4.7763 -1.3893 -0.0011 7 6 5.9678 -0.6891 0.0039 8 6 5.9735 0.6928 0.0047 9 6 4.7724 1.3995 -0.0004 10 6 4.7769 2.8738 0.0010 11 8 3.7257 3.4851 -0.0040 12 7 5.9461 3.5441 0.0068 13 6 5.9507 5.0091 0.0088 14 1 5.1409 5.3999 0.6250 15 6 5.8690 5.5666 -1.4343 16 7 6.4789 6.9065 -1.3563 17 6 6.2346 7.9456 -2.2139 18 1 5.5426 7.8183 -3.0334 19 6 6.8762 9.1628 -2.0302 20 7 7.7199 9.3179 -1.0318 21 14 6.5435 10.5802 -3.2004 22 1 5.5635 10.1518 -4.2308 23 1 5.9912 11.7304 -2.4406 24 1 7.8107 10.9854 -3.8601 25 6 7.3923 6.9424 -0.2048 26 6 7.3237 5.5622 0.4821 27 1 8.1358 4.9205 0.1403 28 8 7.3526 5.7029 1.9037 29 8 2.2742 -1.1004 -0.0119 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 4.7866 -2.4693 -0.0012 34 1 6.9042 -1.2274 0.0075 35 1 6.9120 1.2269 0.0091 36 1 6.7847 3.0565 0.0104 37 1 4.8296 5.6409 -1.7540 38 1 6.4327 4.9323 -2.1184 39 1 8.1680 10.1684 -0.9031 40 1 8.4095 7.1374 -0.5444 41 1 7.0791 7.7195 0.4925 42 1 8.1586 6.1169 2.2417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078248253.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:25 Heat of formation + Delta-G solvation = -4.255890 kcal Electronic energy + Delta-G solvation = -27803.975398 eV Core-core repulsion = 23751.960071 eV Total energy + Delta-G solvation = -4052.015326 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.50952 -39.86179 -38.23603 -37.39380 -35.11368 -34.99546 -34.03894 -32.02995 -31.82478 -30.95560 -28.46096 -28.25775 -26.98526 -24.65376 -23.81986 -23.04246 -22.06077 -20.75587 -20.43907 -20.07294 -18.37322 -17.87541 -17.11163 -16.94173 -16.89317 -16.48551 -15.65989 -15.51861 -14.76389 -14.58350 -14.23038 -14.09487 -13.96883 -13.93580 -13.57456 -13.20063 -13.04893 -12.70474 -12.67991 -12.44554 -12.30824 -12.18513 -12.00867 -11.50865 -11.41331 -11.23501 -10.86539 -10.81187 -10.67074 -10.11641 -9.88556 -9.81835 -9.71459 -9.30920 -9.15331 -8.82886 -8.68765 -8.58601 -6.89531 -5.74980 -3.09050 0.11655 0.80744 2.18922 2.19279 2.80425 3.21558 3.40337 3.46272 3.48800 3.54472 3.68364 4.23554 4.44839 4.45826 4.61182 4.62547 4.70284 4.76428 4.98215 5.01551 5.10763 5.19955 5.31384 5.45496 5.49250 5.60397 5.61487 5.69416 5.82759 5.84325 5.86972 5.95888 6.12477 6.14571 6.23269 6.55186 6.67561 6.92512 7.33094 7.43965 7.47653 7.70131 7.76216 8.12352 8.18856 8.45300 9.16906 9.76814 10.39943 11.37050 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.018221 B = 0.002723 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.282788 B =10278.902454 C =11138.099473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.245 3.755 3 N -0.451 5.451 4 C 0.075 3.925 5 C -0.004 4.004 6 C -0.070 4.070 7 C -0.102 4.102 8 C -0.085 4.085 9 C -0.071 4.071 10 C 0.550 3.450 11 O -0.504 6.504 12 N -0.712 5.712 13 C 0.141 3.859 14 H 0.103 0.897 15 C 0.130 3.870 16 N -0.600 5.600 17 C -0.226 4.226 18 H 0.082 0.918 19 C -0.009 4.009 20 N -0.925 5.925 21 Si 0.915 3.085 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.153 3.847 26 C 0.069 3.931 27 H 0.058 0.942 28 O -0.563 6.563 29 O -0.215 6.215 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.139 0.861 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.394 0.606 37 H 0.052 0.948 38 H 0.024 0.976 39 H 0.252 0.748 40 H 0.049 0.951 41 H 0.061 0.939 42 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.213 -24.600 4.314 25.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.034 3.966 3 N -0.179 5.179 4 C -0.039 4.039 5 C -0.054 4.054 6 C -0.089 4.089 7 C -0.120 4.120 8 C -0.105 4.105 9 C -0.076 4.076 10 C 0.336 3.664 11 O -0.378 6.378 12 N -0.364 5.364 13 C 0.036 3.964 14 H 0.121 0.879 15 C 0.003 3.997 16 N -0.328 5.328 17 C -0.354 4.354 18 H 0.099 0.901 19 C -0.205 4.205 20 N -0.573 5.573 21 Si 0.746 3.254 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.027 3.973 26 C 0.009 3.991 27 H 0.076 0.924 28 O -0.368 6.368 29 O -0.108 6.108 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.157 0.843 34 H 0.165 0.835 35 H 0.160 0.840 36 H 0.229 0.771 37 H 0.070 0.930 38 H 0.042 0.958 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.743 -23.567 4.225 24.621 hybrid contribution 1.216 0.089 -0.566 1.345 sum -4.526 -23.478 3.658 24.189 Atomic orbital electron populations 1.20440 0.80629 1.05679 1.05314 1.26816 0.96928 0.78078 0.94801 1.70832 1.00630 1.27865 1.18610 1.19539 0.91655 0.90508 1.02189 1.20240 0.84203 0.94183 1.06783 1.20015 0.87285 1.00464 1.01139 1.20933 0.97362 0.93695 1.00049 1.21332 0.96892 0.94490 0.97774 1.19357 0.90566 0.93733 1.03898 1.17906 0.84400 0.86291 0.77837 1.90875 1.30825 1.68857 1.47245 1.45833 1.07816 1.07479 1.75240 1.22302 0.98170 0.77372 0.98531 0.87905 1.21857 0.97767 0.87634 0.92462 1.44255 1.49107 1.07946 1.31462 1.19154 1.21343 0.89276 1.05632 0.90067 1.24814 0.99198 0.97828 0.98631 1.69929 1.31705 1.24361 1.31266 0.85987 0.77374 0.82216 0.79861 1.20404 1.21671 1.21743 1.21837 0.95339 0.90531 0.89577 1.23482 0.95382 0.99182 0.81084 0.92428 1.86461 1.45411 1.84164 1.20805 1.84487 1.15039 1.36476 1.74769 0.88200 0.88914 0.87348 0.84322 0.83471 0.84001 0.77073 0.92991 0.95842 0.93729 0.93268 0.92074 0.77572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.41 10.51 36.01 0.38 -0.03 16 2 C 0.24 2.90 8.24 -13.01 -0.11 2.79 16 3 N -0.45 -7.25 10.62 -8.48 -0.09 -7.34 16 4 C 0.07 1.15 6.84 -84.44 -0.58 0.57 16 5 C 0.00 -0.05 7.42 -38.68 -0.29 -0.33 16 6 C -0.07 -0.61 10.05 -39.46 -0.40 -1.01 16 7 C -0.10 -0.77 10.00 -39.61 -0.40 -1.17 16 8 C -0.08 -0.83 9.53 -39.18 -0.37 -1.20 16 9 C -0.07 -1.03 5.90 -104.74 -0.62 -1.65 16 10 C 0.55 9.70 7.76 -12.52 -0.10 9.61 16 11 O -0.50 -11.09 15.82 5.28 0.08 -11.01 16 12 N -0.71 -11.30 5.18 -52.66 -0.27 -11.58 16 13 C 0.14 2.77 3.05 -65.64 -0.20 2.57 16 14 H 0.10 2.33 7.73 -51.93 -0.40 1.92 16 15 C 0.13 2.89 6.93 -2.53 -0.02 2.87 16 16 N -0.60 -15.63 3.39 -170.07 -0.58 -16.21 16 17 C -0.23 -6.42 10.28 -15.06 -0.15 -6.57 16 18 H 0.08 2.25 7.83 -52.48 -0.41 1.84 16 19 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 20 N -0.92 -26.96 10.31 55.49 0.57 -26.39 16 21 Si 0.92 22.35 29.55 -169.99 -5.02 17.32 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 C 0.15 3.64 5.14 -3.07 -0.02 3.63 16 26 C 0.07 1.28 3.97 -24.76 -0.10 1.18 16 27 H 0.06 0.93 8.00 -51.93 -0.42 0.51 16 28 O -0.56 -9.81 13.40 -35.23 -0.47 -10.28 16 29 O -0.22 -2.54 10.78 3.70 0.04 -2.50 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.15 0.57 8.06 -52.48 -0.42 0.15 16 35 H 0.14 1.00 6.39 -52.49 -0.34 0.67 16 36 H 0.39 4.79 6.55 -40.82 -0.27 4.53 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.79 16 40 H 0.05 1.25 7.51 -51.93 -0.39 0.86 16 41 H 0.06 1.64 7.28 -51.93 -0.38 1.26 16 42 H 0.38 5.00 9.11 45.56 0.42 5.42 16 LS Contribution 357.01 15.07 5.38 5.38 Total: -1.00 -38.18 357.01 -7.69 -45.88 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -4.28 Total: 5.80 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: -3.06 Total: 10.92 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: -0.37 Total: -61.51 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.35 Total: -23.78 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -38.18 -7.69 -45.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078248253.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.623 kcal (2) G-P(sol) polarization free energy of solvation -38.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds