Wall clock time and date at job start Tue Mar 31 2020 16:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30093 * 124.87862 * 2 1 4 4 C 1.35584 * 108.83809 * 180.02562 * 3 2 1 5 5 C 1.40292 * 106.62269 * 0.22627 * 4 3 2 6 6 C 1.38584 * 119.92355 * 180.33540 * 5 4 3 7 7 C 1.38209 * 120.21731 * 359.72683 * 6 5 4 8 8 C 1.38190 * 120.67483 * 0.04109 * 7 6 5 9 9 C 1.39363 * 120.23742 * 359.95752 * 8 7 6 10 10 C 1.47433 * 120.29707 * 179.97438 * 9 8 7 11 11 O 1.21601 * 120.00469 * 179.97438 * 10 9 8 12 12 N 1.34778 * 119.99843 * 0.02562 * 10 9 8 13 13 C 1.46505 * 120.00074 * 180.02562 * 12 10 9 14 14 H 1.09000 * 110.91310 * 37.44311 * 13 12 10 15 15 C 1.54914 * 111.00202 * 273.54598 * 13 12 10 16 16 N 1.47426 * 104.82992 * 204.91694 * 15 13 12 17 17 C 1.36936 * 125.64483 * 204.16378 * 16 15 13 18 18 H 1.08004 * 120.00405 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00093 * 179.97438 * 17 16 15 20 20 N 1.31626 * 119.99909 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00506 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46967 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47375 * 120.00211 * 21 19 17 24 24 H 1.48496 * 109.47606 * 240.00311 * 21 19 17 25 25 C 1.47018 * 108.70517 * 24.12623 * 16 15 13 26 26 C 1.54325 * 107.40412 * 358.86539 * 25 16 15 27 27 H 1.09000 * 110.72188 * 96.24097 * 26 25 16 28 28 O 1.42893 * 110.72271 * 219.52456 * 26 25 16 29 29 O 1.34149 * 124.88067 * 180.61868 * 2 1 3 30 30 H 1.08999 * 109.46942 * 89.99972 * 1 2 3 31 31 H 1.08997 * 109.47271 * 210.00298 * 1 2 3 32 32 H 1.09004 * 109.47103 * 329.99826 * 1 2 3 33 33 H 1.07999 * 119.89081 * 179.74215 * 6 5 4 34 34 H 1.08003 * 119.66913 * 180.02562 * 7 6 5 35 35 H 1.07991 * 119.88189 * 179.97438 * 8 7 6 36 36 H 0.96998 * 120.00184 * 359.97438 * 12 10 9 37 37 H 1.08999 * 110.37121 * 86.07429 * 15 13 12 38 38 H 1.09003 * 110.36718 * 323.75334 * 15 13 12 39 39 H 0.96997 * 120.00493 * 180.02562 * 20 19 17 40 40 H 1.09002 * 109.88241 * 118.36067 * 25 16 15 41 41 H 1.09000 * 109.88049 * 239.37196 * 25 16 15 42 42 H 0.96708 * 113.99585 * 298.54470 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2509 1.0672 0.0000 4 6 3.5540 0.6926 -0.0006 5 6 3.5682 -0.7102 -0.0062 6 6 4.7763 -1.3893 -0.0011 7 6 5.9678 -0.6891 0.0039 8 6 5.9735 0.6928 0.0047 9 6 4.7724 1.3995 -0.0004 10 6 4.7769 2.8738 0.0010 11 8 3.7257 3.4851 -0.0040 12 7 5.9461 3.5441 0.0068 13 6 5.9507 5.0091 0.0088 14 1 5.1409 5.3999 0.6250 15 6 5.8690 5.5666 -1.4343 16 7 6.4789 6.9065 -1.3563 17 6 6.2346 7.9456 -2.2139 18 1 5.5426 7.8183 -3.0334 19 6 6.8762 9.1628 -2.0302 20 7 7.7199 9.3179 -1.0318 21 14 6.5435 10.5802 -3.2004 22 1 5.5635 10.1518 -4.2308 23 1 5.9912 11.7304 -2.4406 24 1 7.8107 10.9854 -3.8601 25 6 7.3923 6.9424 -0.2048 26 6 7.3237 5.5622 0.4821 27 1 8.1358 4.9205 0.1403 28 8 7.3526 5.7029 1.9037 29 8 2.2742 -1.1004 -0.0119 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 4.7866 -2.4693 -0.0012 34 1 6.9042 -1.2274 0.0075 35 1 6.9120 1.2269 0.0091 36 1 6.7847 3.0565 0.0104 37 1 4.8296 5.6409 -1.7540 38 1 6.4327 4.9323 -2.1184 39 1 8.1680 10.1684 -0.9031 40 1 8.4095 7.1374 -0.5444 41 1 7.0791 7.7195 0.4925 42 1 8.1586 6.1169 2.2417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078248253.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:24 Heat of formation + Delta-G solvation = -37.586257 kcal Electronic energy + Delta-G solvation = -27805.420711 eV Core-core repulsion = 23751.960071 eV Total energy + Delta-G solvation = -4053.460639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.36203 -41.20475 -39.61192 -38.54125 -36.69413 -36.00603 -35.58493 -33.77397 -32.57643 -32.10645 -30.10530 -29.14195 -28.72177 -26.49568 -24.83394 -24.07363 -22.88406 -22.45214 -21.97483 -21.48803 -19.38365 -19.14036 -18.59606 -18.24840 -17.98942 -17.64433 -17.29517 -16.48122 -16.30448 -16.05339 -15.73084 -15.57442 -15.09586 -14.72556 -14.62757 -14.49709 -14.32989 -14.09874 -13.82737 -13.64753 -13.44908 -13.19302 -13.11195 -13.07198 -12.96235 -12.78522 -12.75030 -12.31311 -12.07546 -11.91333 -11.66885 -11.56107 -11.11822 -10.84789 -10.79226 -10.28651 -9.93455 -9.52895 -8.99334 -7.91107 -5.28300 -0.74002 0.01866 1.32563 1.42298 1.44181 1.45968 1.56267 1.72948 1.90642 2.45720 2.67307 2.81129 3.08912 3.28349 3.35097 3.50510 3.70161 3.77276 3.86102 4.01054 4.04605 4.06252 4.14093 4.27971 4.41696 4.52250 4.56897 4.59973 4.66947 4.75153 4.79256 4.90603 4.97753 5.12420 5.14157 5.23336 5.33809 5.38835 5.42660 5.56417 5.63984 6.11428 6.46740 6.58620 6.85987 7.02950 7.17636 7.66308 8.29005 9.18861 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.018221 B = 0.002723 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.282788 B =10278.902454 C =11138.099473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.250 3.750 3 N -0.517 5.517 4 C 0.037 3.963 5 C -0.023 4.023 6 C -0.053 4.053 7 C -0.089 4.089 8 C -0.065 4.065 9 C -0.115 4.115 10 C 0.548 3.452 11 O -0.563 6.563 12 N -0.693 5.693 13 C 0.155 3.845 14 H 0.065 0.935 15 C 0.133 3.867 16 N -0.622 5.622 17 C -0.249 4.249 18 H 0.078 0.922 19 C -0.060 4.060 20 N -0.947 5.947 21 Si 0.982 3.018 22 H -0.270 1.270 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.160 3.840 26 C 0.094 3.906 27 H 0.102 0.898 28 O -0.569 6.569 29 O -0.214 6.214 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.106 0.894 33 H 0.177 0.823 34 H 0.200 0.800 35 H 0.173 0.827 36 H 0.416 0.584 37 H 0.026 0.974 38 H 0.044 0.956 39 H 0.250 0.750 40 H 0.031 0.969 41 H 0.021 0.979 42 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.425 -28.020 4.148 28.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.039 3.961 3 N -0.247 5.247 4 C -0.076 4.076 5 C -0.073 4.073 6 C -0.072 4.072 7 C -0.106 4.106 8 C -0.084 4.084 9 C -0.119 4.119 10 C 0.337 3.663 11 O -0.442 6.442 12 N -0.347 5.347 13 C 0.048 3.952 14 H 0.083 0.917 15 C 0.006 3.994 16 N -0.349 5.349 17 C -0.378 4.378 18 H 0.096 0.904 19 C -0.253 4.253 20 N -0.595 5.595 21 Si 0.809 3.191 22 H -0.194 1.194 23 H -0.218 1.218 24 H -0.211 1.211 25 C 0.034 3.966 26 C 0.034 3.966 27 H 0.119 0.881 28 O -0.377 6.377 29 O -0.107 6.107 30 H 0.136 0.864 31 H 0.142 0.858 32 H 0.124 0.876 33 H 0.195 0.805 34 H 0.217 0.783 35 H 0.190 0.810 36 H 0.256 0.744 37 H 0.045 0.955 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.040 0.960 42 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -3.908 -27.041 4.072 27.624 hybrid contribution 0.648 1.050 -0.487 1.327 sum -3.261 -25.991 3.585 26.439 Atomic orbital electron populations 1.20736 0.77345 1.07031 1.06799 1.27730 0.98413 0.77432 0.92488 1.70785 1.02097 1.30259 1.21512 1.19947 0.91706 0.92389 1.03558 1.20735 0.85290 0.93293 1.08015 1.20677 0.86036 1.02429 0.98032 1.21546 0.98904 0.92641 0.97515 1.21779 0.96062 0.95817 0.94750 1.19253 0.92394 0.91468 1.08812 1.18548 0.83647 0.87974 0.76178 1.90834 1.32892 1.70406 1.50059 1.45515 1.08719 1.05676 1.74780 1.21771 0.97715 0.79611 0.96069 0.91696 1.21899 0.96252 0.86662 0.94612 1.44520 1.49867 1.08827 1.31716 1.19462 1.21530 0.90563 1.06239 0.90405 1.25646 0.99192 1.00113 1.00362 1.70121 1.32244 1.24658 1.32478 0.84973 0.77423 0.78695 0.77980 1.19443 1.21837 1.21090 1.21669 0.93577 0.92869 0.88435 1.23178 0.95713 0.96306 0.81381 0.88088 1.86429 1.47239 1.84303 1.19708 1.84481 1.15129 1.36282 1.74784 0.86426 0.85831 0.87587 0.80523 0.78316 0.81020 0.74445 0.95533 0.93859 0.94026 0.95063 0.96032 0.75192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.77 10.51 71.24 0.75 -0.02 16 2 C 0.25 6.06 8.24 88.37 0.73 6.78 16 3 N -0.52 -17.67 10.62 -295.51 -3.14 -20.81 16 4 C 0.04 1.17 6.84 39.71 0.27 1.44 16 5 C -0.02 -0.54 7.42 22.85 0.17 -0.37 16 6 C -0.05 -0.71 10.05 22.35 0.22 -0.48 16 7 C -0.09 -0.87 10.00 22.25 0.22 -0.65 16 8 C -0.06 -1.04 9.53 22.53 0.21 -0.82 16 9 C -0.12 -3.29 5.90 -19.94 -0.12 -3.40 16 10 C 0.55 19.97 7.76 86.67 0.67 20.65 16 11 O -0.56 -26.75 15.82 -4.03 -0.06 -26.81 16 12 N -0.69 -21.64 5.18 -438.78 -2.27 -23.92 16 13 C 0.16 6.19 3.05 46.47 0.14 6.33 16 14 H 0.06 3.12 7.73 -2.39 -0.02 3.10 16 15 C 0.13 6.06 6.93 86.86 0.60 6.67 16 16 N -0.62 -33.43 3.39 -691.97 -2.35 -35.78 16 17 C -0.25 -14.59 10.28 84.03 0.86 -13.73 16 18 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 19 C -0.06 -3.46 5.49 84.86 0.47 -2.99 16 20 N -0.95 -56.54 10.31 21.65 0.22 -56.31 16 21 Si 0.98 46.70 29.55 68.60 2.03 48.72 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 24 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 25 C 0.16 7.82 5.14 86.73 0.45 8.27 16 26 C 0.09 3.42 3.97 31.87 0.13 3.55 16 27 H 0.10 2.87 8.00 -2.39 -0.02 2.86 16 28 O -0.57 -19.11 13.40 -148.98 -2.00 -21.10 16 29 O -0.21 -4.90 10.78 -9.68 -0.10 -5.01 16 30 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 34 H 0.20 -0.01 8.06 -2.91 -0.02 -0.03 16 35 H 0.17 1.57 6.39 -2.92 -0.02 1.55 16 36 H 0.42 8.95 6.55 -92.71 -0.61 8.34 16 37 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 40 H 0.03 1.62 7.51 -2.39 -0.02 1.60 16 41 H 0.02 1.21 7.28 -2.39 -0.02 1.19 16 42 H 0.40 9.84 9.11 -74.05 -0.67 9.16 16 Total: -1.00 -91.95 357.01 -2.09 -94.04 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -0.19 Total: 15.77 kcal Atomic # 6 Polarization: 25.42 SS G_CDS: 5.78 Total: 31.20 kcal Atomic # 7 Polarization: -129.28 SS G_CDS: -7.54 Total: -136.81 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -2.16 Total: -52.92 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.72 kcal Total: -91.95 -2.09 -94.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078248253.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.450 kcal (2) G-P(sol) polarization free energy of solvation -91.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds