Wall clock time and date at job start Tue Mar 31 2020 16:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30009 * 124.84075 * 2 1 4 4 C 1.35841 * 108.85632 * 179.89919 * 3 2 1 5 5 C 1.39841 * 133.62222 * 180.10792 * 4 3 2 6 6 C 1.36285 * 120.04075 * 180.32696 * 5 4 3 7 7 C 1.40096 * 120.41121 * 359.94866 * 6 5 4 8 8 C 1.47622 * 119.92324 * 180.02562 * 7 6 5 9 9 O 1.21584 * 119.99964 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00428 * 0.02562 * 8 7 6 11 11 C 1.46503 * 120.00497 * 179.97438 * 10 8 7 12 12 H 1.09000 * 110.63532 * 34.30111 * 11 10 8 13 13 C 1.54322 * 110.72348 * 271.16264 * 11 10 8 14 14 N 1.47025 * 107.26881 * 219.44057 * 13 11 10 15 15 C 1.36937 * 125.64179 * 178.97262 * 14 13 11 16 16 H 1.07993 * 120.00708 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99601 * 180.02562 * 15 14 13 18 18 N 1.31622 * 119.99852 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00151 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.46932 * 59.99693 * 19 17 15 21 21 H 1.48493 * 109.47168 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46864 * 299.99622 * 19 17 15 23 23 C 1.47420 * 108.70193 * 358.93867 * 14 13 11 24 24 C 1.55119 * 104.94516 * 24.00701 * 23 14 13 25 25 H 1.09005 * 111.15976 * 205.13178 * 24 23 14 26 26 O 1.42897 * 110.93871 * 81.21261 * 24 23 14 27 27 C 1.39425 * 120.14877 * 0.02966 * 7 6 5 28 28 C 1.38290 * 119.61991 * 359.97438 * 27 7 6 29 29 O 1.34139 * 124.83704 * 180.30877 * 2 1 3 30 30 H 1.09001 * 109.46953 * 269.69111 * 1 2 3 31 31 H 1.09000 * 109.47318 * 29.68709 * 1 2 3 32 32 H 1.09000 * 109.47161 * 149.69339 * 1 2 3 33 33 H 1.08004 * 119.97998 * 0.27859 * 5 4 3 34 34 H 1.08003 * 119.79471 * 179.97438 * 6 5 4 35 35 H 0.96997 * 119.99737 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.88038 * 338.85770 * 13 11 10 37 37 H 1.08996 * 109.88532 * 100.02162 * 13 11 10 38 38 H 0.97003 * 119.99956 * 180.02562 * 18 17 15 39 39 H 1.09005 * 110.36198 * 142.96667 * 23 14 13 40 40 H 1.09002 * 110.36668 * 265.17566 * 23 14 13 41 41 H 0.96703 * 114.00019 * 67.95944 * 26 24 23 42 42 H 1.08005 * 120.19360 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2498 1.0670 0.0000 4 6 3.5557 0.6930 0.0023 5 6 4.7619 1.4005 0.0052 6 6 5.9473 0.7280 0.0003 7 6 5.9680 -0.6728 -0.0067 8 6 7.2581 -1.3902 -0.0114 9 8 7.2777 -2.6058 -0.0180 10 7 8.4144 -0.6977 -0.0086 11 6 9.6948 -1.4097 -0.0127 12 1 9.6207 -2.3299 -0.5921 13 6 10.1585 -1.7078 1.4287 14 7 11.6129 -1.4970 1.4717 15 6 12.4073 -1.6382 2.5781 16 1 11.9713 -1.9284 3.5225 17 6 13.7732 -1.4082 2.4857 18 7 14.3045 -1.0540 1.3348 19 14 14.8571 -1.6014 3.9948 20 1 14.7611 -2.9953 4.4979 21 1 16.2658 -1.3006 3.6342 22 1 14.4058 -0.6613 5.0520 23 6 12.0743 -1.1093 0.1263 24 6 10.8256 -0.5024 -0.5654 25 1 10.8976 -0.5848 -1.6500 26 8 10.6320 0.8566 -0.1687 27 6 4.7728 -1.3907 -0.0093 28 6 3.5678 -0.7122 -0.0043 29 8 2.2733 -1.1010 -0.0059 30 1 -0.3633 -0.0055 1.0277 31 1 -0.3634 0.8928 -0.5090 32 1 -0.3633 -0.8872 -0.5186 33 1 4.7541 2.4805 0.0106 34 1 6.8766 1.2785 0.0021 35 1 8.3988 0.2721 -0.0037 36 1 9.6648 -1.0295 2.1247 37 1 9.9258 -2.7409 1.6868 38 1 15.2590 -0.8937 1.2701 39 1 12.8686 -0.3661 0.1972 40 1 12.4226 -1.9846 -0.4221 41 1 11.3143 1.4614 -0.4908 42 1 4.7879 -2.4707 -0.0150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083541431.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:27 Heat of formation + Delta-G solvation = -34.782993 kcal Electronic energy + Delta-G solvation = -27492.088441 eV Core-core repulsion = 23438.749360 eV Total energy + Delta-G solvation = -4053.339081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.43440 -41.36345 -39.68610 -38.55656 -36.35759 -36.00003 -35.59117 -33.71150 -32.65936 -31.94773 -30.53374 -29.49070 -28.42458 -26.44411 -24.77485 -24.16226 -22.82984 -22.44340 -21.85787 -21.43226 -19.67594 -19.05144 -18.69352 -18.28801 -18.03584 -17.55858 -16.88678 -16.83751 -16.19589 -15.98793 -15.76294 -15.32934 -15.19699 -14.94310 -14.64326 -14.58231 -14.31974 -14.23191 -14.08608 -13.64330 -13.47005 -13.29352 -13.20521 -12.95023 -12.73533 -12.69863 -12.34406 -12.24466 -12.15950 -11.89095 -11.85973 -11.69748 -11.23177 -10.87031 -10.70475 -10.23178 -10.06923 -9.60888 -8.89695 -7.80155 -5.23381 -0.81210 0.00294 0.99567 1.25063 1.46836 1.49479 1.55755 1.76104 2.01707 2.49123 2.57230 2.71081 3.19730 3.28559 3.30504 3.50505 3.70735 3.82382 3.84578 3.87991 3.91209 3.95066 4.18584 4.31290 4.48257 4.56365 4.61632 4.65020 4.73295 4.77643 4.85181 4.86464 4.93492 5.01528 5.06967 5.17815 5.33351 5.38350 5.43628 5.47939 5.72900 6.26739 6.41729 6.46967 6.91641 7.09370 7.10702 7.73737 8.36204 9.21450 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.027940 B = 0.002267 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.895144 B =12346.319015 C =12515.469276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.263 3.737 3 N -0.511 5.511 4 C 0.035 3.965 5 C -0.067 4.067 6 C -0.072 4.072 7 C -0.116 4.116 8 C 0.560 3.440 9 O -0.575 6.575 10 N -0.686 5.686 11 C 0.153 3.847 12 H 0.100 0.900 13 C 0.130 3.870 14 N -0.616 5.616 15 C -0.242 4.242 16 H 0.073 0.927 17 C -0.060 4.060 18 N -0.944 5.944 19 Si 0.980 3.020 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.278 1.278 23 C 0.125 3.875 24 C 0.092 3.908 25 H 0.098 0.902 26 O -0.562 6.562 27 C -0.032 4.032 28 C -0.023 4.023 29 O -0.219 6.219 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.169 0.831 34 H 0.168 0.832 35 H 0.420 0.580 36 H 0.024 0.976 37 H 0.011 0.989 38 H 0.250 0.750 39 H 0.092 0.908 40 H 0.001 0.999 41 H 0.397 0.603 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.059 7.387 -7.329 27.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.053 3.947 3 N -0.242 5.242 4 C -0.077 4.077 5 C -0.085 4.085 6 C -0.092 4.092 7 C -0.120 4.120 8 C 0.348 3.652 9 O -0.456 6.456 10 N -0.338 5.338 11 C 0.047 3.953 12 H 0.118 0.882 13 C 0.003 3.997 14 N -0.342 5.342 15 C -0.371 4.371 16 H 0.091 0.909 17 C -0.253 4.253 18 N -0.593 5.593 19 Si 0.808 3.192 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.204 1.204 23 C 0.000 4.000 24 C 0.031 3.969 25 H 0.115 0.885 26 O -0.371 6.371 27 C -0.052 4.052 28 C -0.073 4.073 29 O -0.111 6.111 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.133 0.867 33 H 0.186 0.814 34 H 0.186 0.814 35 H 0.259 0.741 36 H 0.042 0.958 37 H 0.029 0.971 38 H 0.060 0.940 39 H 0.110 0.890 40 H 0.019 0.981 41 H 0.248 0.752 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -25.553 6.921 -6.992 27.382 hybrid contribution 1.696 -0.709 0.663 1.955 sum -23.857 6.212 -6.328 25.452 Atomic orbital electron populations 1.20843 0.76800 1.07460 1.07105 1.27796 0.98458 0.77286 0.91182 1.70675 1.00778 1.29787 1.22949 1.20433 0.93246 0.91282 1.02752 1.20251 0.87408 1.01834 0.99051 1.21172 0.99690 0.91729 0.96620 1.19520 0.91350 0.94455 1.06667 1.18315 0.84335 0.86715 0.75854 1.90780 1.88008 1.14956 1.51816 1.45538 1.03779 1.11375 1.73156 1.21893 0.81902 0.95619 0.95855 0.88173 1.21653 0.85318 0.96880 0.95811 1.44535 1.01970 1.80647 1.07073 1.19339 0.89617 1.39323 0.88787 0.90948 1.25548 0.97577 1.02027 1.00171 1.69928 1.11019 1.54182 1.24220 0.85130 0.77540 0.77848 0.78648 1.20898 1.21425 1.20430 1.22560 0.95521 0.98072 0.83844 1.23316 0.93462 0.82459 0.97651 0.88457 1.86183 1.53722 1.17093 1.80075 1.19850 0.86598 1.01021 0.97727 1.20100 0.84124 0.94752 1.08347 1.84508 1.15007 1.37076 1.74541 0.86095 0.86001 0.86672 0.81395 0.81444 0.74052 0.95767 0.97076 0.94043 0.88996 0.98144 0.75205 0.83906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 10.51 71.24 0.75 0.43 16 2 C 0.26 4.53 8.23 88.38 0.73 5.26 16 3 N -0.51 -11.22 11.33 -296.05 -3.35 -14.57 16 4 C 0.04 0.82 7.24 39.47 0.29 1.11 16 5 C -0.07 -1.27 10.03 22.20 0.22 -1.04 16 6 C -0.07 -1.39 9.46 22.27 0.21 -1.18 16 7 C -0.12 -2.94 5.88 -20.06 -0.12 -3.05 16 8 C 0.56 17.34 7.76 86.72 0.67 18.02 16 9 O -0.57 -22.14 16.01 -3.98 -0.06 -22.20 16 10 N -0.69 -20.13 5.03 -439.99 -2.21 -22.34 16 11 C 0.15 5.48 3.15 46.18 0.15 5.63 16 12 H 0.10 3.69 7.62 -2.39 -0.02 3.67 16 13 C 0.13 5.84 7.00 86.73 0.61 6.45 16 14 N -0.62 -32.09 3.40 -691.57 -2.35 -34.44 16 15 C -0.24 -13.80 10.27 84.03 0.86 -12.93 16 16 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 17 C -0.06 -3.39 5.49 84.86 0.47 -2.93 16 18 N -0.94 -54.21 10.09 21.65 0.22 -53.99 16 19 Si 0.98 45.59 29.55 68.60 2.03 47.62 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 23 C 0.13 5.82 5.63 86.93 0.49 6.31 16 24 C 0.09 3.08 4.31 32.06 0.14 3.22 16 25 H 0.10 2.65 8.14 -2.38 -0.02 2.64 16 26 O -0.56 -16.80 12.23 -148.98 -1.82 -18.62 16 27 C -0.03 -0.83 9.60 22.57 0.22 -0.61 16 28 C -0.02 -0.58 7.42 22.84 0.17 -0.41 16 29 O -0.22 -4.83 10.77 -9.61 -0.10 -4.94 16 30 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 34 H 0.17 2.36 6.37 -2.91 -0.02 2.34 16 35 H 0.42 10.25 5.58 -92.71 -0.52 9.74 16 36 H 0.02 1.11 8.03 -2.39 -0.02 1.09 16 37 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 39 H 0.09 4.73 5.87 -2.38 -0.01 4.71 16 40 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.40 9.16 9.12 -74.05 -0.68 8.49 16 42 H 0.14 3.77 7.64 -2.91 -0.02 3.75 16 Total: -1.00 -76.98 354.96 -1.91 -78.89 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -0.10 Total: 20.33 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: 5.85 Total: 24.26 kcal Atomic # 7 Polarization: -117.64 SS G_CDS: -7.70 Total: -125.34 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -1.99 Total: -45.76 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -76.98 -1.91 -78.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083541431.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.104 kcal (2) G-P(sol) polarization free energy of solvation -76.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds