Wall clock time and date at job start Tue Mar 31 2020 15:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39831 * 126.46048 * 2 1 4 4 C 1.35456 * 107.86511 * 179.97438 * 3 2 1 5 5 N 1.35531 * 108.87207 * 359.97438 * 4 3 2 6 6 H 0.96996 * 125.67799 * 180.02562 * 5 4 3 7 7 C 1.37647 * 108.64501 * 359.97438 * 5 4 3 8 8 C 1.46678 * 126.23408 * 180.26459 * 7 5 4 9 9 O 1.21691 * 119.99586 * 73.09117 * 8 7 5 10 10 N 1.34780 * 119.99987 * 253.09197 * 8 7 5 11 11 C 1.48149 * 127.83518 * 185.58125 * 10 8 7 12 12 C 1.54393 * 104.61370 * 219.58593 * 11 10 8 13 13 H 1.09001 * 110.34033 * 95.00304 * 12 11 10 14 14 C 1.52998 * 110.34140 * 217.26121 * 12 11 10 15 15 F 1.39901 * 109.46892 * 58.54942 * 14 12 11 16 16 F 1.39897 * 109.47093 * 178.55016 * 14 12 11 17 17 F 1.39896 * 109.46981 * 298.54818 * 14 12 11 18 18 C 1.54279 * 104.96090 * 336.13459 * 12 11 10 19 19 H 1.09006 * 110.34458 * 241.13011 * 18 12 11 20 20 N 1.46504 * 110.34369 * 118.97858 * 18 12 11 21 21 C 1.36937 * 120.00030 * 155.00064 * 20 18 12 22 22 H 1.07998 * 119.99986 * 359.97438 * 21 20 18 23 23 C 1.38814 * 119.99615 * 179.97438 * 21 20 18 24 24 N 1.31615 * 120.00435 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99695 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46991 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46964 * 119.99988 * 25 23 21 28 28 H 1.48493 * 109.47044 * 240.00290 * 25 23 21 29 29 C 1.48145 * 127.83890 * 5.26565 * 10 8 7 30 30 H 1.08999 * 109.47032 * 270.03078 * 1 2 3 31 31 H 1.09000 * 109.46783 * 30.02736 * 1 2 3 32 32 H 1.08993 * 109.47442 * 150.02409 * 1 2 3 33 33 H 1.08005 * 126.06633 * 359.97213 * 3 2 1 34 34 H 1.07997 * 125.56233 * 179.97438 * 4 3 2 35 35 H 1.08997 * 110.40588 * 338.36892 * 11 10 8 36 36 H 1.08994 * 110.40736 * 100.80650 * 11 10 8 37 37 H 0.96996 * 119.99767 * 334.99470 * 20 18 12 38 38 H 0.97001 * 120.00461 * 180.02562 * 24 23 21 39 39 H 1.08997 * 110.40107 * 259.19737 * 29 10 8 40 40 H 1.09002 * 110.40604 * 21.62245 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1246 0.0000 4 6 3.6218 0.6927 0.0006 5 7 3.6283 -0.6626 0.0015 6 1 4.4190 -1.2245 0.0024 7 6 2.3263 -1.1090 0.0021 8 6 1.8898 -2.5093 0.0087 9 8 2.0001 -3.1762 1.0205 10 7 1.3665 -3.0573 -1.1060 11 6 0.7706 -4.4046 -1.2628 12 6 1.2625 -4.8898 -2.6435 13 1 2.1594 -5.4993 -2.5334 14 6 0.1623 -5.6833 -3.3512 15 9 -0.9724 -4.8782 -3.4980 16 9 0.6151 -6.0855 -4.6123 17 9 -0.1617 -6.8117 -2.5904 18 6 1.5831 -3.6005 -3.4278 19 1 0.9567 -3.5324 -4.3173 20 7 2.9997 -3.5697 -3.8000 21 6 3.4069 -2.8403 -4.8850 22 1 2.6836 -2.2880 -5.4666 23 6 4.7492 -2.8107 -5.2373 24 7 5.6306 -3.4841 -4.5287 25 14 5.3046 -1.8162 -6.7179 26 1 4.1288 -1.1564 -7.3402 27 1 6.2788 -0.7832 -6.2831 28 1 5.9477 -2.7181 -7.7069 29 6 1.2511 -2.4467 -2.4508 30 1 -0.3633 0.0006 1.0277 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3634 -0.8901 -0.5134 33 1 2.0137 2.1548 -0.0004 34 1 4.4973 1.3251 0.0003 35 1 1.1260 -5.0711 -0.4769 36 1 -0.3175 -4.3430 -1.2470 37 1 3.6492 -4.0660 -3.2777 38 1 6.5687 -3.4632 -4.7747 39 1 0.2368 -2.0841 -2.6177 40 1 1.9692 -1.6343 -2.5623 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099246975.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:10 Heat of formation + Delta-G solvation = -123.688489 kcal Electronic energy + Delta-G solvation = -29811.817730 eV Core-core repulsion = 25212.766677 eV Total energy + Delta-G solvation = -4599.051053 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.93590 -47.44723 -47.34879 -41.14930 -39.41452 -37.44526 -34.14312 -32.64815 -32.04287 -30.72161 -29.48001 -27.67891 -27.02825 -25.48444 -24.30403 -22.64530 -21.33434 -20.41060 -20.40035 -18.83675 -18.34349 -18.18045 -18.03756 -17.41502 -16.72263 -16.39552 -15.22396 -15.10148 -14.86612 -14.34700 -14.26605 -14.12167 -13.84098 -13.79196 -13.67476 -13.53966 -13.51403 -13.38563 -13.36224 -13.13994 -12.85212 -12.63271 -12.22547 -12.12335 -11.90470 -11.70212 -11.46392 -11.35615 -10.98763 -10.93589 -10.89902 -10.21128 -9.96654 -9.91411 -9.26856 -8.63830 -8.62403 -7.94966 -7.23386 -5.97465 -3.29625 2.02728 2.43016 2.84108 2.96730 3.18326 3.31600 3.38717 3.40179 3.66990 3.95965 4.03679 4.18111 4.44114 4.69934 4.84956 5.00937 5.16806 5.20315 5.24500 5.29841 5.43398 5.44476 5.50798 5.65344 5.76177 5.78860 5.89544 5.98989 6.04690 6.07379 6.14092 6.24870 6.39698 6.50980 6.96954 7.12456 7.52449 7.57927 7.61879 8.17496 8.19661 9.30896 9.79347 10.14858 11.23986 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.007623 B = 0.006473 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3672.209786 B = 4324.604385 C = 7020.518749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.120 4.120 3 C -0.204 4.204 4 C 0.012 3.988 5 N -0.521 5.521 6 H 0.421 0.579 7 C -0.028 4.028 8 C 0.616 3.384 9 O -0.542 6.542 10 N -0.599 5.599 11 C 0.117 3.883 12 C -0.166 4.166 13 H 0.129 0.871 14 C 0.465 3.535 15 F -0.183 7.183 16 F -0.173 7.173 17 F -0.187 7.187 18 C 0.179 3.821 19 H 0.079 0.921 20 N -0.708 5.708 21 C -0.250 4.250 22 H 0.076 0.924 23 C -0.004 4.004 24 N -0.927 5.927 25 Si 0.909 3.091 26 H -0.278 1.278 27 H -0.291 1.291 28 H -0.290 1.290 29 C 0.076 3.924 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.138 0.862 34 H 0.168 0.832 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.386 0.614 38 H 0.257 0.743 39 H 0.068 0.932 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.948 3.424 6.896 12.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.127 4.127 3 C -0.229 4.229 4 C -0.123 4.123 5 N -0.115 5.115 6 H 0.259 0.741 7 C -0.143 4.143 8 C 0.404 3.596 9 O -0.419 6.419 10 N -0.332 5.332 11 C -0.006 4.006 12 C -0.188 4.188 13 H 0.147 0.853 14 C 0.410 3.590 15 F -0.165 7.165 16 F -0.154 7.154 17 F -0.169 7.169 18 C 0.066 3.934 19 H 0.097 0.903 20 N -0.348 5.348 21 C -0.381 4.381 22 H 0.094 0.906 23 C -0.201 4.201 24 N -0.574 5.574 25 Si 0.739 3.261 26 H -0.203 1.203 27 H -0.218 1.218 28 H -0.217 1.217 29 C -0.049 4.049 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.156 0.844 34 H 0.185 0.815 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.221 0.779 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.677 3.079 7.337 12.528 hybrid contribution 0.950 0.010 -0.866 1.285 sum -8.727 3.089 6.472 11.295 Atomic orbital electron populations 1.20189 0.90054 1.02226 1.01571 1.19705 0.95169 0.91013 1.06854 1.20614 0.91767 0.98332 1.12165 1.21882 0.99460 0.82803 1.08177 1.41760 1.06854 1.07172 1.55685 0.74105 1.19713 0.84738 0.92832 1.17026 1.16657 0.76859 0.84466 0.81644 1.90822 1.56209 1.62573 1.32277 1.48696 1.58858 1.15542 1.10098 1.22157 0.98230 0.85053 0.95191 1.23896 0.97557 1.00464 0.96870 0.85324 1.20274 0.82704 0.78146 0.77887 1.93157 1.54232 1.73237 1.95826 1.93236 1.88792 1.91110 1.42266 1.93170 1.93662 1.54199 1.75826 1.21118 0.89861 0.88103 0.94365 0.90307 1.42406 1.00399 1.58452 1.33561 1.19259 0.92102 1.22723 1.03985 0.90645 1.24763 0.95905 1.00204 0.99249 1.69667 1.01784 1.45134 1.40831 0.86107 0.78490 0.79315 0.82178 1.20288 1.21793 1.21674 1.23705 1.01522 0.99300 0.80418 0.91952 0.91466 0.92226 0.84383 0.81498 0.88673 0.90059 0.77889 0.93317 0.91356 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.20 36.00 0.37 -0.63 16 2 C -0.12 -1.72 6.21 -104.16 -0.65 -2.37 16 3 C -0.20 -2.65 10.76 -39.98 -0.43 -3.08 16 4 C 0.01 0.15 11.89 -16.91 -0.20 -0.05 16 5 N -0.52 -7.58 6.10 -9.39 -0.06 -7.64 16 6 H 0.42 5.71 8.96 -40.82 -0.37 5.34 16 7 C -0.03 -0.45 5.84 -81.98 -0.48 -0.93 16 8 C 0.62 10.73 7.40 -12.85 -0.10 10.64 16 9 O -0.54 -10.84 17.36 5.20 0.09 -10.75 16 10 N -0.60 -9.46 3.31 -170.59 -0.56 -10.03 16 11 C 0.12 1.64 6.35 -2.40 -0.02 1.62 16 12 C -0.17 -2.49 2.84 -89.22 -0.25 -2.74 16 13 H 0.13 2.02 7.67 -51.93 -0.40 1.63 16 14 C 0.46 6.64 2.51 37.16 0.09 6.74 16 15 F -0.18 -2.50 16.04 2.25 0.04 -2.46 16 16 F -0.17 -2.83 17.07 2.25 0.04 -2.79 16 17 F -0.19 -2.56 17.11 2.25 0.04 -2.52 16 18 C 0.18 3.11 3.01 -66.32 -0.20 2.91 16 19 H 0.08 1.39 7.34 -51.93 -0.38 1.01 16 20 N -0.71 -15.78 5.14 -51.86 -0.27 -16.04 16 21 C -0.25 -6.30 9.96 -15.06 -0.15 -6.45 16 22 H 0.08 1.85 7.83 -52.49 -0.41 1.44 16 23 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 24 N -0.93 -26.07 13.06 55.49 0.72 -25.34 16 25 Si 0.91 21.11 29.55 -169.99 -5.02 16.09 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 29 C 0.08 1.21 6.62 -2.20 -0.01 1.20 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.73 7.96 -51.93 -0.41 0.31 16 33 H 0.14 1.46 8.06 -52.48 -0.42 1.04 16 34 H 0.17 1.56 8.06 -52.49 -0.42 1.13 16 35 H 0.09 1.33 7.84 -51.93 -0.41 0.92 16 36 H 0.08 0.99 7.32 -51.93 -0.38 0.61 16 37 H 0.39 9.36 7.55 -40.82 -0.31 9.05 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.10 1.76 7.44 -51.93 -0.39 1.38 16 LS Contribution 353.90 15.07 5.33 5.33 Total: -1.00 -30.13 353.90 -6.47 -36.60 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -4.70 Total: 12.89 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -2.12 Total: 6.65 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.16 Total: -59.05 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 9 Polarization: -7.88 SS G_CDS: 0.11 Total: -7.77 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.13 -6.47 -36.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099246975.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.084 kcal (2) G-P(sol) polarization free energy of solvation -30.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds