Wall clock time and date at job start Tue Mar 31 2020 16:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46918 * 2 1 4 4 H 1.08999 * 109.47172 * 304.99674 * 3 2 1 5 5 C 1.52996 * 109.47166 * 184.99896 * 3 2 1 6 6 C 1.47205 * 109.47419 * 174.99653 * 5 3 2 7 7 N 4.86397 * 126.40102 * 355.02380 * 2 1 3 8 8 N 1.46504 * 109.47321 * 64.99825 * 3 2 1 9 9 C 1.34770 * 119.99861 * 275.00197 * 8 3 2 10 10 O 1.21365 * 120.00396 * 359.97438 * 9 8 3 11 11 C 1.49319 * 119.99749 * 180.27620 * 9 8 3 12 12 O 1.21395 * 120.00246 * 359.72235 * 11 9 8 13 13 N 1.34784 * 120.00097 * 179.72500 * 11 9 8 14 14 C 1.39742 * 119.99878 * 175.49744 * 13 11 9 15 15 C 1.38993 * 120.00232 * 214.86631 * 14 13 11 16 16 C 1.37975 * 119.99232 * 179.74059 * 15 14 13 17 17 C 1.38942 * 120.00288 * 0.50914 * 16 15 14 18 18 O 1.35755 * 119.98823 * 179.74737 * 17 16 15 19 19 C 1.34801 * 116.99792 * 185.36870 * 18 17 16 20 20 H 1.08004 * 120.00062 * 354.95495 * 19 18 17 21 21 C 1.38647 * 120.00363 * 174.95973 * 19 18 17 22 22 N 1.31562 * 120.00093 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00249 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47284 * 60.00248 * 23 21 19 25 25 H 1.48503 * 109.47275 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47043 * 299.99920 * 23 21 19 27 27 C 1.38935 * 120.01305 * 359.76336 * 17 16 15 28 28 C 1.37969 * 120.00984 * 359.97438 * 27 17 16 29 29 H 1.09001 * 109.46591 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46875 * 300.00177 * 1 2 3 31 31 H 1.08994 * 109.46904 * 60.00145 * 1 2 3 32 32 H 1.08998 * 109.47076 * 240.00338 * 2 1 3 33 33 H 1.09002 * 109.47117 * 119.99627 * 2 1 3 34 34 H 1.08995 * 109.47645 * 295.00147 * 5 3 2 35 35 H 1.09001 * 109.46998 * 55.00120 * 5 3 2 36 36 H 0.96998 * 119.99456 * 94.99745 * 8 3 2 37 37 H 0.96994 * 119.99817 * 355.49013 * 13 11 9 38 38 H 1.07998 * 120.00427 * 359.97438 * 15 14 13 39 39 H 1.07998 * 119.99953 * 180.25493 * 16 15 14 40 40 H 0.96991 * 120.00246 * 179.97438 * 22 21 19 41 41 H 1.08004 * 119.99431 * 179.97438 * 27 17 16 42 42 H 1.08000 * 119.99936 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1257 6 6 4.0456 2.8305 -0.2464 7 7 4.4165 3.9002 -0.3396 8 7 1.6524 2.0975 1.2518 9 6 0.4351 2.6644 1.3669 10 8 -0.3398 2.6326 0.4334 11 6 0.0424 3.3374 2.6406 12 8 0.8177 3.3696 3.5742 13 7 -1.1729 3.9091 2.7539 14 6 -1.5767 4.4560 3.9748 15 6 -2.9094 4.3819 4.3627 16 6 -3.3069 4.9172 5.5706 17 6 -2.3771 5.5395 6.3944 18 8 -2.7696 6.0706 7.5806 19 6 -1.8437 6.7565 8.2801 20 1 -0.8222 6.7945 7.9315 21 6 -2.2027 7.4131 9.4473 22 7 -3.4471 7.3672 9.8719 23 14 -0.9195 8.3631 10.4171 24 1 -0.3476 9.4354 9.5637 25 1 -1.5532 8.9689 11.6157 26 1 0.1626 7.4397 10.8433 27 6 -1.0460 5.6186 6.0044 28 6 -0.6469 5.0788 4.7990 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.0030 0.9837 0.7596 35 1 3.8571 0.8801 -1.0113 36 1 2.2719 2.1232 1.9977 37 1 -1.7671 3.9411 1.9879 38 1 -3.6330 3.9021 3.7203 39 1 -4.3417 4.8560 5.8740 40 1 -3.6981 7.8263 10.6886 41 1 -0.3236 6.1028 6.6448 42 1 0.3878 5.1408 4.4958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116708758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:07 Heat of formation + Delta-G solvation = -66.141374 kcal Electronic energy + Delta-G solvation = -26895.430535 eV Core-core repulsion = 22840.731652 eV Total energy + Delta-G solvation = -4054.698882 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.14422 -40.93155 -40.03986 -38.28199 -38.20903 -36.83521 -35.51213 -34.19117 -33.35839 -31.92590 -31.49019 -29.93581 -27.48374 -26.44079 -25.11082 -23.98322 -22.99624 -21.80027 -21.41807 -20.27129 -19.64262 -18.92564 -18.45913 -18.26829 -17.65106 -17.19710 -16.80929 -16.37616 -16.21169 -15.56173 -15.50307 -15.42349 -15.25397 -15.10692 -15.02546 -14.68212 -14.24669 -14.15528 -13.92831 -13.68611 -13.58766 -13.39291 -13.27663 -13.03374 -12.78734 -12.69997 -12.49800 -12.43457 -12.32696 -12.15898 -11.95152 -11.62949 -11.47614 -11.12600 -10.70153 -10.57981 -10.23397 -9.89183 -8.71148 -8.48487 -6.15367 0.07678 0.49487 0.69759 1.26612 1.34924 1.44994 1.50454 1.77204 1.85736 2.09316 2.16921 2.57540 2.78120 3.03038 3.11715 3.36426 3.47820 3.74578 4.04570 4.06838 4.14565 4.18767 4.43618 4.53710 4.56924 4.61862 4.63712 4.75903 4.90827 5.03347 5.04448 5.06028 5.10230 5.26088 5.27556 5.32950 5.42331 5.48761 5.58679 5.65242 5.87255 6.00022 6.08962 6.30834 6.64155 6.72479 6.90725 6.96150 7.73894 8.73781 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.018914 B = 0.002275 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.000621 B =12302.866820 C =13356.025428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C 0.143 3.857 4 H 0.090 0.910 5 C -0.027 4.027 6 C 0.225 3.775 7 N -0.505 5.505 8 N -0.690 5.690 9 C 0.522 3.478 10 O -0.523 6.523 11 C 0.493 3.507 12 O -0.532 6.532 13 N -0.620 5.620 14 C 0.049 3.951 15 C -0.070 4.070 16 C -0.179 4.179 17 C 0.113 3.887 18 O -0.223 6.223 19 C -0.415 4.415 20 H 0.099 0.901 21 C -0.019 4.019 22 N -0.916 5.916 23 Si 1.015 2.985 24 H -0.259 1.259 25 H -0.269 1.269 26 H -0.259 1.259 27 C -0.228 4.228 28 C -0.070 4.070 29 H 0.058 0.942 30 H 0.030 0.970 31 H 0.050 0.950 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.151 0.849 35 H 0.175 0.825 36 H 0.419 0.581 37 H 0.429 0.571 38 H 0.165 0.835 39 H 0.131 0.869 40 H 0.274 0.726 41 H 0.121 0.879 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.130 -18.231 -22.630 31.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C 0.039 3.961 4 H 0.108 0.892 5 C -0.066 4.066 6 C -0.091 4.091 7 N -0.183 5.183 8 N -0.344 5.344 9 C 0.301 3.699 10 O -0.399 6.399 11 C 0.275 3.725 12 O -0.409 6.409 13 N -0.268 5.268 14 C -0.044 4.044 15 C -0.090 4.090 16 C -0.199 4.199 17 C 0.062 3.938 18 O -0.129 6.129 19 C -0.492 4.492 20 H 0.117 0.883 21 C -0.217 4.217 22 N -0.554 5.554 23 Si 0.835 3.165 24 H -0.184 1.184 25 H -0.194 1.194 26 H -0.183 1.183 27 C -0.248 4.248 28 C -0.090 4.090 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.133 0.867 33 H 0.105 0.895 34 H 0.169 0.831 35 H 0.193 0.807 36 H 0.256 0.744 37 H 0.268 0.732 38 H 0.183 0.817 39 H 0.149 0.851 40 H 0.083 0.917 41 H 0.139 0.861 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 12.372 -16.597 -22.549 30.610 hybrid contribution 0.027 0.600 0.973 1.144 sum 12.399 -15.997 -21.576 29.583 Atomic orbital electron populations 1.21826 0.96827 1.01054 1.01276 1.21966 0.95302 0.93462 1.05580 1.21408 0.93625 0.95342 0.85725 0.89168 1.20077 0.92682 0.83230 1.10625 1.29975 0.92053 0.95680 0.91430 1.81333 1.11024 1.14770 1.11186 1.45950 1.15014 1.55049 1.18389 1.19500 0.83771 0.79793 0.86801 1.90786 1.51258 1.58455 1.39405 1.20696 0.82763 0.79915 0.89112 1.90779 1.50872 1.58505 1.40730 1.42800 1.17265 1.54557 1.12135 1.17364 0.93895 1.04097 0.89041 1.20781 0.94402 0.98651 0.95157 1.20319 0.99106 1.05386 0.95071 1.19966 0.93640 0.93640 0.86597 1.83933 1.39758 1.61987 1.27259 1.21752 0.91321 1.30050 1.06029 0.88339 1.26529 0.99777 0.97940 0.97448 1.70158 1.19026 1.42752 1.23429 0.84693 0.76523 0.78065 0.77249 1.18365 1.19373 1.18296 1.21097 0.95727 1.08435 0.99548 1.20918 0.99686 0.94968 0.93379 0.92343 0.95131 0.93117 0.86736 0.89513 0.83114 0.80729 0.74385 0.73207 0.81719 0.85075 0.91710 0.86141 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.52 71.98 0.61 -1.06 16 2 C -0.13 -0.36 5.61 30.60 0.17 -0.19 16 3 C 0.14 0.79 2.23 44.99 0.10 0.89 16 4 H 0.09 0.81 7.57 -2.39 -0.02 0.79 16 5 C -0.03 0.02 5.25 28.79 0.15 0.17 16 6 C 0.23 2.71 15.14 89.44 1.35 4.06 16 7 N -0.51 -11.25 18.54 20.01 0.37 -10.88 16 8 N -0.69 -8.68 4.72 -444.00 -2.10 -10.78 16 9 C 0.52 10.38 6.45 87.23 0.56 10.94 16 10 O -0.52 -11.39 13.62 -3.29 -0.04 -11.44 16 11 C 0.49 12.86 7.73 87.23 0.67 13.53 16 12 O -0.53 -16.72 13.91 -3.39 -0.05 -16.77 16 13 N -0.62 -16.20 5.32 -304.73 -1.62 -17.82 16 14 C 0.05 1.64 6.30 38.24 0.24 1.88 16 15 C -0.07 -2.25 9.96 22.39 0.22 -2.03 16 16 C -0.18 -7.29 9.98 22.38 0.22 -7.07 16 17 C 0.11 5.59 6.65 22.61 0.15 5.74 16 18 O -0.22 -13.32 9.75 -22.50 -0.22 -13.54 16 19 C -0.42 -24.31 9.48 67.92 0.64 -23.67 16 20 H 0.10 5.36 5.19 -2.91 -0.02 5.34 16 21 C -0.02 -1.07 5.49 84.83 0.47 -0.60 16 22 N -0.92 -55.88 13.67 21.61 0.30 -55.59 16 23 Si 1.02 43.22 29.55 68.60 2.03 45.24 16 24 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 26 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 27 C -0.23 -10.42 9.16 22.37 0.20 -10.22 16 28 C -0.07 -2.72 8.68 22.39 0.19 -2.53 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.03 0.49 5.64 -2.39 -0.01 0.48 16 31 H 0.05 0.67 7.85 -2.39 -0.02 0.65 16 32 H 0.11 -0.34 8.14 -2.39 -0.02 -0.36 16 33 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.15 -0.90 8.14 -2.39 -0.02 -0.92 16 35 H 0.18 -1.50 8.14 -2.39 -0.02 -1.52 16 36 H 0.42 4.71 8.07 -92.71 -0.75 3.96 16 37 H 0.43 8.91 8.30 -92.71 -0.77 8.14 16 38 H 0.17 3.78 8.06 -2.91 -0.02 3.76 16 39 H 0.13 5.07 8.06 -2.91 -0.02 5.05 16 40 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 41 H 0.12 5.64 5.63 -2.91 -0.02 5.63 16 42 H 0.13 4.94 6.22 -2.91 -0.02 4.92 16 Total: -1.00 -84.56 366.66 4.23 -80.33 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -0.41 Total: 21.38 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 5.97 Total: -10.14 kcal Atomic # 7 Polarization: -92.02 SS G_CDS: -3.05 Total: -95.07 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -0.31 Total: -41.75 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -84.56 4.23 -80.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116708758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.186 kcal (2) G-P(sol) polarization free energy of solvation -84.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds