Wall clock time and date at job start Tue Mar 31 2020 16:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46946 * 2 1 4 4 H 1.08997 * 109.47241 * 54.99925 * 3 2 1 5 5 C 1.53001 * 109.46833 * 175.00118 * 3 2 1 6 6 C 1.47205 * 109.46854 * 185.00032 * 5 3 2 7 7 N 4.86383 * 126.40261 * 4.97356 * 2 1 3 8 8 N 1.46499 * 109.46847 * 294.99571 * 3 2 1 9 9 C 1.34783 * 120.00008 * 85.00609 * 8 3 2 10 10 O 1.21365 * 119.99549 * 359.97438 * 9 8 3 11 11 C 1.49316 * 120.00119 * 179.97438 * 9 8 3 12 12 O 1.21394 * 120.00113 * 359.97438 * 11 9 8 13 13 N 1.34774 * 119.99967 * 180.02562 * 11 9 8 14 14 C 1.39746 * 120.00324 * 175.49524 * 13 11 9 15 15 C 1.38989 * 120.00982 * 214.86720 * 14 13 11 16 16 C 1.37969 * 119.99484 * 179.74326 * 15 14 13 17 17 C 1.38933 * 120.00170 * 0.50465 * 16 15 14 18 18 O 1.35767 * 119.99101 * 179.74872 * 17 16 15 19 19 C 1.34804 * 116.99597 * 185.36880 * 18 17 16 20 20 H 1.07990 * 120.00341 * 354.95733 * 19 18 17 21 21 C 1.38661 * 119.99332 * 174.96288 * 19 18 17 22 22 N 1.31561 * 119.99480 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00216 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47014 * 89.99939 * 23 21 19 25 25 H 1.48492 * 109.47317 * 210.00033 * 23 21 19 26 26 H 1.48504 * 109.47022 * 330.00410 * 23 21 19 27 27 C 1.38932 * 120.01951 * 359.76845 * 17 16 15 28 28 C 1.37973 * 120.00439 * 359.97438 * 27 17 16 29 29 H 1.08997 * 109.47268 * 300.00034 * 1 2 3 30 30 H 1.08998 * 109.46787 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46975 * 60.00381 * 1 2 3 32 32 H 1.09003 * 109.46621 * 119.99928 * 2 1 3 33 33 H 1.08997 * 109.47010 * 239.99480 * 2 1 3 34 34 H 1.09002 * 109.47063 * 304.99693 * 5 3 2 35 35 H 1.08997 * 109.47265 * 65.00121 * 5 3 2 36 36 H 0.96996 * 120.00496 * 264.99997 * 8 3 2 37 37 H 0.96998 * 120.00400 * 355.49153 * 13 11 9 38 38 H 1.08008 * 120.00442 * 359.97438 * 15 14 13 39 39 H 1.07994 * 119.99798 * 180.25137 * 16 15 14 40 40 H 0.96995 * 119.99740 * 179.97438 * 22 21 19 41 41 H 1.08002 * 119.99915 * 179.97438 * 27 17 16 42 42 H 1.08000 * 120.00467 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1257 6 6 4.0456 2.8304 0.2464 7 7 4.4166 3.9000 0.3394 8 7 1.6525 2.0974 -1.2519 9 6 0.4352 2.6643 -1.3671 10 8 -0.3400 2.6319 -0.4338 11 6 0.0404 3.3323 -2.6428 12 8 0.8160 3.3651 -3.5761 13 7 -1.1767 3.8997 -2.7578 14 6 -1.5118 4.6060 -3.9161 15 6 -2.3285 5.7277 -3.8345 16 6 -2.6548 6.4279 -4.9776 17 6 -2.1756 6.0058 -6.2115 18 8 -2.5010 6.6921 -7.3368 19 6 -2.0969 6.1683 -8.5114 20 1 -1.4718 5.2877 -8.5234 21 6 -2.4838 6.7602 -9.7041 22 7 -2.0891 6.2493 -10.8503 23 14 -3.5655 8.2830 -9.6832 24 1 -2.7108 9.4969 -9.6458 25 1 -4.4081 8.3085 -10.9057 26 1 -4.4375 8.2544 -8.4815 27 6 -1.3638 4.8814 -6.2941 28 6 -1.0328 4.1838 -5.1507 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.8571 0.8800 1.0113 35 1 4.0030 0.9836 -0.7597 36 1 2.2720 2.1231 -1.9978 37 1 -1.8201 3.8177 -2.0366 38 1 -2.7047 6.0533 -2.8758 39 1 -3.2861 7.3018 -4.9138 40 1 -2.3600 6.6632 -11.6847 41 1 -0.9918 4.5533 -7.2535 42 1 -0.4021 3.3094 -5.2150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116708759.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:11 Heat of formation + Delta-G solvation = -38.125817 kcal Electronic energy + Delta-G solvation = -26910.590991 eV Core-core repulsion = 22857.106954 eV Total energy + Delta-G solvation = -4053.484037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.14914 -39.72413 -38.75288 -37.61150 -36.77844 -36.16192 -34.19632 -32.75684 -32.37400 -31.09992 -30.37974 -28.61628 -25.99853 -25.18067 -24.26348 -22.58224 -21.66749 -21.12948 -20.34264 -19.04329 -18.07794 -17.79668 -17.44737 -17.34533 -16.57315 -16.42986 -15.79496 -15.06127 -14.77889 -14.66875 -14.55179 -14.19551 -14.03043 -13.88840 -13.85752 -13.48685 -13.41568 -13.08079 -12.85985 -12.57641 -12.49414 -12.33692 -12.14009 -12.01240 -11.90885 -11.75997 -11.58667 -11.48750 -11.24665 -11.00095 -10.77971 -10.27691 -9.85829 -9.69925 -9.60652 -9.31386 -8.82735 -8.36853 -7.16760 -6.45610 -4.11312 1.15419 2.00059 2.04252 2.21504 2.30799 2.39351 3.10532 3.21201 3.23711 3.37455 3.38501 3.48762 4.06613 4.20346 4.29405 4.43284 4.44476 4.49812 4.75887 4.78412 4.85220 4.97983 5.06434 5.21461 5.39394 5.48979 5.56078 5.58835 5.68188 5.86378 5.93844 6.00764 6.05809 6.11533 6.46093 6.60979 6.72588 6.85001 6.95916 7.13926 7.21664 7.30763 7.50900 7.58508 7.73908 7.94602 8.02038 8.88930 9.49828 10.61680 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.022094 B = 0.002182 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.027144 B =12829.463735 C =13081.431992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C 0.146 3.854 4 H 0.102 0.898 5 C -0.034 4.034 6 C 0.195 3.805 7 N -0.420 5.420 8 N -0.702 5.702 9 C 0.516 3.484 10 O -0.512 6.512 11 C 0.495 3.505 12 O -0.506 6.506 13 N -0.625 5.625 14 C 0.031 3.969 15 C -0.087 4.087 16 C -0.177 4.177 17 C 0.156 3.844 18 O -0.213 6.213 19 C -0.390 4.390 20 H 0.108 0.892 21 C 0.064 3.936 22 N -0.876 5.876 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.208 4.208 28 C -0.062 4.062 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.130 0.870 35 H 0.118 0.882 36 H 0.415 0.585 37 H 0.414 0.586 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.280 0.720 41 H 0.138 0.862 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.755 -14.142 22.729 27.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C 0.041 3.959 4 H 0.120 0.880 5 C -0.074 4.074 6 C -0.123 4.123 7 N -0.097 5.097 8 N -0.357 5.357 9 C 0.297 3.703 10 O -0.388 6.388 11 C 0.276 3.724 12 O -0.381 6.381 13 N -0.270 5.270 14 C -0.061 4.061 15 C -0.107 4.107 16 C -0.197 4.197 17 C 0.103 3.897 18 O -0.117 6.117 19 C -0.465 4.465 20 H 0.125 0.875 21 C -0.140 4.140 22 N -0.514 5.514 23 Si 0.732 3.268 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.183 1.183 27 C -0.228 4.228 28 C -0.082 4.082 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.147 0.853 35 H 0.136 0.864 36 H 0.251 0.749 37 H 0.251 0.749 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.090 0.910 41 H 0.156 0.844 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.204 -12.303 22.608 26.729 hybrid contribution -0.438 0.106 -0.283 0.532 sum 6.767 -12.198 22.325 26.325 Atomic orbital electron populations 1.21823 0.94340 1.01283 1.03200 1.21974 0.97698 0.94231 1.03254 1.21159 0.91913 0.94993 0.87849 0.87967 1.19661 0.94974 0.85802 1.06991 1.29015 0.94135 0.95162 0.93999 1.81297 1.08245 1.12036 1.08081 1.45823 1.16505 1.56221 1.17108 1.20076 0.82673 0.79126 0.88398 1.90776 1.50764 1.57433 1.39780 1.20032 0.82881 0.81268 0.88239 1.90797 1.51029 1.57035 1.39266 1.42838 1.14238 1.50876 1.19091 1.17292 1.06989 0.96721 0.85123 1.20385 0.99227 0.93319 0.97786 1.19996 1.06585 1.03276 0.89848 1.19183 0.92753 0.90583 0.87207 1.83562 1.69220 1.46048 1.12900 1.20796 1.31907 1.13902 0.79915 0.87473 1.24488 0.97160 0.98842 0.93508 1.69647 1.44055 1.40301 0.97358 0.86168 0.80584 0.81873 0.78219 1.19835 1.20764 1.18291 1.21214 1.03866 0.98449 0.99279 1.20890 0.98003 0.99172 0.90120 0.91851 0.92938 0.92542 0.90114 0.90865 0.85264 0.86360 0.74862 0.74908 0.86259 0.85839 0.90955 0.84402 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 8.51 37.16 0.32 -0.66 16 2 C -0.13 -0.47 5.61 -26.73 -0.15 -0.62 16 3 C 0.15 0.67 2.23 -67.93 -0.15 0.52 16 4 H 0.10 0.61 7.58 -51.93 -0.39 0.21 16 5 C -0.03 -0.07 5.25 -29.52 -0.16 -0.23 16 6 C 0.20 1.42 15.14 -20.76 -0.31 1.11 16 7 N -0.42 -4.86 18.54 42.15 0.78 -4.07 16 8 N -0.70 -5.27 4.72 -54.28 -0.26 -5.52 16 9 C 0.52 5.53 6.45 -11.65 -0.08 5.46 16 10 O -0.51 -5.94 13.62 5.48 0.07 -5.87 16 11 C 0.49 6.73 7.73 -11.65 -0.09 6.64 16 12 O -0.51 -8.16 13.91 5.46 0.08 -8.08 16 13 N -0.62 -8.54 5.32 -10.27 -0.05 -8.59 16 14 C 0.03 0.52 6.30 -83.69 -0.53 0.00 16 15 C -0.09 -1.42 9.96 -39.40 -0.39 -1.82 16 16 C -0.18 -3.38 9.98 -39.42 -0.39 -3.77 16 17 C 0.16 3.53 6.65 -39.07 -0.26 3.27 16 18 O -0.21 -5.51 8.58 0.07 0.00 -5.51 16 19 C -0.39 -10.86 9.94 30.89 0.31 -10.55 16 20 H 0.11 3.05 5.43 -52.49 -0.28 2.77 16 21 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 22 N -0.88 -25.09 13.96 55.48 0.77 -24.32 16 23 Si 0.91 21.40 28.62 -169.99 -4.86 16.54 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 27 C -0.21 -4.52 9.16 -39.42 -0.36 -4.88 16 28 C -0.06 -1.18 8.68 -39.40 -0.34 -1.53 16 29 H 0.06 0.47 7.85 -51.93 -0.41 0.06 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.49 5.64 -51.93 -0.29 0.20 16 32 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 33 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.13 -0.13 8.14 -51.93 -0.42 -0.56 16 35 H 0.12 0.00 8.14 -51.93 -0.42 -0.42 16 36 H 0.41 2.87 8.07 -40.82 -0.33 2.54 16 37 H 0.41 4.65 8.30 -40.82 -0.34 4.31 16 38 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 39 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.14 3.14 5.63 -52.49 -0.30 2.85 16 42 H 0.13 2.37 6.23 -52.49 -0.33 2.04 16 LS Contribution 365.54 15.07 5.51 5.51 Total: -1.00 -34.30 365.54 -5.41 -39.70 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -4.76 Total: 5.61 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -2.68 Total: -5.40 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 1.25 Total: -42.50 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: 0.15 Total: -19.46 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.86 Total: 16.54 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.30 -5.41 -39.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116708759.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.579 kcal (2) G-P(sol) polarization free energy of solvation -34.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds