Wall clock time and date at job start Tue Mar 31 2020 16:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46946 * 2 1 4 4 H 1.08997 * 109.47241 * 54.99925 * 3 2 1 5 5 C 1.53001 * 109.46833 * 175.00118 * 3 2 1 6 6 C 1.47205 * 109.46854 * 185.00032 * 5 3 2 7 7 N 4.86383 * 126.40261 * 4.97356 * 2 1 3 8 8 N 1.46499 * 109.46847 * 294.99571 * 3 2 1 9 9 C 1.34783 * 120.00008 * 85.00609 * 8 3 2 10 10 O 1.21365 * 119.99549 * 359.97438 * 9 8 3 11 11 C 1.49316 * 120.00119 * 179.97438 * 9 8 3 12 12 O 1.21394 * 120.00113 * 359.97438 * 11 9 8 13 13 N 1.34774 * 119.99967 * 180.02562 * 11 9 8 14 14 C 1.39746 * 120.00324 * 175.49524 * 13 11 9 15 15 C 1.38989 * 120.00982 * 214.86720 * 14 13 11 16 16 C 1.37969 * 119.99484 * 179.74326 * 15 14 13 17 17 C 1.38933 * 120.00170 * 0.50465 * 16 15 14 18 18 O 1.35767 * 119.99101 * 179.74872 * 17 16 15 19 19 C 1.34804 * 116.99597 * 185.36880 * 18 17 16 20 20 H 1.07990 * 120.00341 * 354.95733 * 19 18 17 21 21 C 1.38661 * 119.99332 * 174.96288 * 19 18 17 22 22 N 1.31561 * 119.99480 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00216 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47014 * 89.99939 * 23 21 19 25 25 H 1.48492 * 109.47317 * 210.00033 * 23 21 19 26 26 H 1.48504 * 109.47022 * 330.00410 * 23 21 19 27 27 C 1.38932 * 120.01951 * 359.76845 * 17 16 15 28 28 C 1.37973 * 120.00439 * 359.97438 * 27 17 16 29 29 H 1.08997 * 109.47268 * 300.00034 * 1 2 3 30 30 H 1.08998 * 109.46787 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46975 * 60.00381 * 1 2 3 32 32 H 1.09003 * 109.46621 * 119.99928 * 2 1 3 33 33 H 1.08997 * 109.47010 * 239.99480 * 2 1 3 34 34 H 1.09002 * 109.47063 * 304.99693 * 5 3 2 35 35 H 1.08997 * 109.47265 * 65.00121 * 5 3 2 36 36 H 0.96996 * 120.00496 * 264.99997 * 8 3 2 37 37 H 0.96998 * 120.00400 * 355.49153 * 13 11 9 38 38 H 1.08008 * 120.00442 * 359.97438 * 15 14 13 39 39 H 1.07994 * 119.99798 * 180.25137 * 16 15 14 40 40 H 0.96995 * 119.99740 * 179.97438 * 22 21 19 41 41 H 1.08002 * 119.99915 * 179.97438 * 27 17 16 42 42 H 1.08000 * 120.00467 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1257 6 6 4.0456 2.8304 0.2464 7 7 4.4166 3.9000 0.3394 8 7 1.6525 2.0974 -1.2519 9 6 0.4352 2.6643 -1.3671 10 8 -0.3400 2.6319 -0.4338 11 6 0.0404 3.3323 -2.6428 12 8 0.8160 3.3651 -3.5761 13 7 -1.1767 3.8997 -2.7578 14 6 -1.5118 4.6060 -3.9161 15 6 -2.3285 5.7277 -3.8345 16 6 -2.6548 6.4279 -4.9776 17 6 -2.1756 6.0058 -6.2115 18 8 -2.5010 6.6921 -7.3368 19 6 -2.0969 6.1683 -8.5114 20 1 -1.4718 5.2877 -8.5234 21 6 -2.4838 6.7602 -9.7041 22 7 -2.0891 6.2493 -10.8503 23 14 -3.5655 8.2830 -9.6832 24 1 -2.7108 9.4969 -9.6458 25 1 -4.4081 8.3085 -10.9057 26 1 -4.4375 8.2544 -8.4815 27 6 -1.3638 4.8814 -6.2941 28 6 -1.0328 4.1838 -5.1507 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.8571 0.8800 1.0113 35 1 4.0030 0.9836 -0.7597 36 1 2.2720 2.1231 -1.9978 37 1 -1.8201 3.8177 -2.0366 38 1 -2.7047 6.0533 -2.8758 39 1 -3.2861 7.3018 -4.9138 40 1 -2.3600 6.6632 -11.6847 41 1 -0.9918 4.5533 -7.2535 42 1 -0.4021 3.3094 -5.2150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116708759.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:10 Heat of formation + Delta-G solvation = -63.419333 kcal Electronic energy + Delta-G solvation = -26911.687800 eV Core-core repulsion = 22857.106954 eV Total energy + Delta-G solvation = -4054.580846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.16755 -41.00757 -40.11516 -38.33640 -38.24968 -36.84354 -35.53844 -34.38863 -33.36395 -31.96013 -31.49433 -30.12420 -27.46274 -26.37496 -25.10596 -24.06201 -22.90569 -21.80643 -21.43671 -20.30765 -19.55894 -19.13219 -18.53682 -18.27928 -17.64200 -17.32565 -16.90885 -16.35054 -15.94896 -15.79486 -15.64281 -15.44404 -15.26427 -15.10169 -15.03492 -14.49891 -14.30301 -14.21258 -14.05124 -13.92354 -13.69379 -13.49680 -13.34951 -13.04353 -12.81146 -12.75482 -12.50784 -12.45916 -12.34676 -12.00765 -11.95483 -11.63273 -11.53802 -11.17900 -10.77974 -10.64290 -10.23967 -9.91965 -8.78287 -8.50622 -6.22956 0.04715 0.46182 0.65793 1.24670 1.32906 1.37434 1.53024 1.76883 1.85486 2.07864 2.28213 2.55789 2.72883 2.99155 3.02742 3.13284 3.35175 3.74119 4.02448 4.03967 4.14261 4.18391 4.40532 4.52689 4.54454 4.59014 4.61716 4.75528 4.90383 4.95810 5.04120 5.09725 5.13205 5.26990 5.27916 5.35476 5.42243 5.52347 5.58288 5.71271 5.82267 5.90950 6.13272 6.29156 6.63776 6.71238 6.82929 6.89553 7.54623 8.60884 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.022094 B = 0.002182 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.027144 B =12829.463735 C =13081.431992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C 0.144 3.856 4 H 0.091 0.909 5 C -0.027 4.027 6 C 0.225 3.775 7 N -0.506 5.506 8 N -0.690 5.690 9 C 0.522 3.478 10 O -0.522 6.522 11 C 0.493 3.507 12 O -0.532 6.532 13 N -0.621 5.621 14 C 0.057 3.943 15 C -0.074 4.074 16 C -0.168 4.168 17 C 0.118 3.882 18 O -0.238 6.238 19 C -0.401 4.401 20 H 0.080 0.920 21 C 0.010 3.990 22 N -0.923 5.923 23 Si 0.973 3.027 24 H -0.267 1.267 25 H -0.268 1.268 26 H -0.258 1.258 27 C -0.222 4.222 28 C -0.073 4.073 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.030 0.970 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.176 0.824 35 H 0.151 0.849 36 H 0.418 0.582 37 H 0.430 0.570 38 H 0.169 0.831 39 H 0.145 0.855 40 H 0.285 0.715 41 H 0.112 0.888 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.790 -15.336 26.501 31.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C 0.039 3.961 4 H 0.109 0.891 5 C -0.067 4.067 6 C -0.092 4.092 7 N -0.183 5.183 8 N -0.345 5.345 9 C 0.301 3.699 10 O -0.398 6.398 11 C 0.275 3.725 12 O -0.409 6.409 13 N -0.268 5.268 14 C -0.036 4.036 15 C -0.094 4.094 16 C -0.187 4.187 17 C 0.069 3.931 18 O -0.145 6.145 19 C -0.477 4.477 20 H 0.097 0.903 21 C -0.189 4.189 22 N -0.563 5.563 23 Si 0.795 3.205 24 H -0.192 1.192 25 H -0.193 1.193 26 H -0.182 1.182 27 C -0.241 4.241 28 C -0.093 4.093 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.133 0.867 33 H 0.105 0.895 34 H 0.193 0.807 35 H 0.168 0.832 36 H 0.256 0.744 37 H 0.270 0.730 38 H 0.186 0.814 39 H 0.163 0.837 40 H 0.095 0.905 41 H 0.129 0.871 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.265 -13.547 26.460 30.601 hybrid contribution -0.335 0.201 -1.082 1.151 sum 6.929 -13.346 25.377 29.498 Atomic orbital electron populations 1.21827 0.96788 1.01064 1.01299 1.21966 0.95334 0.93437 1.05580 1.21407 0.93590 0.95349 0.85722 0.89103 1.20084 0.92740 0.83217 1.10618 1.29976 0.92058 0.95685 0.91432 1.81330 1.11014 1.14793 1.11190 1.45964 1.15139 1.54936 1.18411 1.19490 0.83811 0.79671 0.86880 1.90786 1.51305 1.58229 1.39486 1.20712 0.82311 0.80341 0.89107 1.90794 1.51769 1.57732 1.40603 1.42807 1.15036 1.50592 1.18387 1.17438 1.04636 0.96170 0.85368 1.20851 0.97716 0.91902 0.98915 1.20377 1.05691 1.03777 0.88882 1.19709 0.94187 0.91511 0.87730 1.83508 1.71113 1.47070 1.12791 1.20707 1.32028 1.13540 0.81443 0.90265 1.25325 0.98637 1.01977 0.92954 1.69736 1.46222 1.42300 0.98046 0.85184 0.78836 0.77987 0.78526 1.19181 1.19287 1.18186 1.21135 1.04563 0.99193 0.99249 1.20923 0.98656 0.99278 0.90412 0.93065 0.92359 0.95105 0.86734 0.89541 0.80702 0.83165 0.74420 0.73027 0.81352 0.83697 0.90514 0.87061 0.85240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.51 71.99 0.61 -1.01 16 2 C -0.13 -0.35 5.61 30.60 0.17 -0.18 16 3 C 0.14 0.78 2.23 44.99 0.10 0.88 16 4 H 0.09 0.80 7.58 -2.39 -0.02 0.78 16 5 C -0.03 0.01 5.25 28.79 0.15 0.17 16 6 C 0.23 2.75 15.14 89.44 1.35 4.11 16 7 N -0.51 -11.38 18.54 20.01 0.37 -11.01 16 8 N -0.69 -8.65 4.72 -444.00 -2.10 -10.75 16 9 C 0.52 10.20 6.45 87.23 0.56 10.76 16 10 O -0.52 -11.06 13.62 -3.29 -0.04 -11.11 16 11 C 0.49 12.65 7.73 87.23 0.67 13.32 16 12 O -0.53 -16.78 13.91 -3.38 -0.05 -16.83 16 13 N -0.62 -15.53 5.32 -304.75 -1.62 -17.15 16 14 C 0.06 1.82 6.30 38.24 0.24 2.06 16 15 C -0.07 -2.18 9.96 22.39 0.22 -1.96 16 16 C -0.17 -6.11 9.98 22.37 0.22 -5.88 16 17 C 0.12 5.50 6.65 22.60 0.15 5.65 16 18 O -0.24 -12.79 8.58 -22.66 -0.19 -12.99 16 19 C -0.40 -23.72 9.94 67.92 0.68 -23.04 16 20 H 0.08 4.95 5.43 -2.92 -0.02 4.94 16 21 C 0.01 0.56 5.49 84.83 0.47 1.02 16 22 N -0.92 -55.40 13.96 21.62 0.30 -55.10 16 23 Si 0.97 45.18 28.62 68.60 1.96 47.14 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 26 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 27 C -0.22 -10.12 9.16 22.37 0.20 -9.92 16 28 C -0.07 -2.81 8.68 22.39 0.19 -2.61 16 29 H 0.05 0.66 7.85 -2.39 -0.02 0.64 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.03 0.48 5.64 -2.39 -0.01 0.47 16 32 H 0.11 -0.35 8.14 -2.39 -0.02 -0.37 16 33 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.18 -1.49 8.14 -2.39 -0.02 -1.51 16 35 H 0.15 -0.86 8.14 -2.39 -0.02 -0.88 16 36 H 0.42 4.78 8.07 -92.71 -0.75 4.03 16 37 H 0.43 8.31 8.30 -92.71 -0.77 7.54 16 38 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 39 H 0.15 4.65 8.06 -2.91 -0.02 4.63 16 40 H 0.29 15.67 8.31 -92.71 -0.77 14.90 16 41 H 0.11 5.61 5.63 -2.91 -0.02 5.59 16 42 H 0.13 4.91 6.23 -2.91 -0.02 4.89 16 Total: -1.00 -82.29 365.54 4.23 -78.07 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -0.41 Total: 16.35 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 6.01 Total: -6.63 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -3.04 Total: -94.00 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -0.29 Total: -40.92 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.96 Total: 47.14 kcal Total: -82.29 4.23 -78.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116708759.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.646 kcal (2) G-P(sol) polarization free energy of solvation -82.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds