Wall clock time and date at job start Tue Mar 31 2020 16:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21614 * 119.99522 * 0.02562 * 14 13 3 16 16 C 1.47434 * 120.00401 * 180.02562 * 14 13 3 17 17 N 1.31536 * 126.86673 * 359.68323 * 16 14 13 18 18 N 1.28378 * 111.91247 * 179.85215 * 17 16 14 19 19 H 0.97005 * 124.31848 * 180.18302 * 18 17 16 20 20 C 1.36558 * 111.35331 * 0.43394 * 18 17 16 21 21 C 1.40752 * 106.14834 * 359.74692 * 20 18 17 22 22 C 1.39162 * 120.27989 * 179.97438 * 21 20 18 23 23 C 1.37953 * 119.87781 * 0.02562 * 22 21 20 24 24 C 1.38418 * 120.58512 * 359.97438 * 23 22 21 25 25 C 1.39320 * 120.57372 * 359.97438 * 24 23 22 26 26 C 1.47398 * 120.25995 * 180.02562 * 25 24 23 27 27 O 1.21519 * 119.99561 * 179.97438 * 26 25 24 28 28 O 1.34754 * 120.00434 * 0.02562 * 26 25 24 29 29 C 1.45195 * 117.00176 * 179.97438 * 28 26 25 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 34 34 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 35 35 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 36 36 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 37 37 H 1.08000 * 120.05736 * 180.02562 * 22 21 20 38 38 H 1.07997 * 119.70167 * 180.02562 * 23 22 21 39 39 H 1.08003 * 119.71154 * 180.02562 * 24 23 22 40 40 H 1.09006 * 109.47070 * 60.00005 * 29 28 26 41 41 H 1.09003 * 109.47442 * 179.97438 * 29 28 26 42 42 H 1.08999 * 109.47404 * 299.99822 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3417 2.6318 0.4318 16 6 0.0452 3.3241 2.6265 17 7 0.7712 3.4329 3.7179 18 7 0.1502 4.0674 4.6452 19 1 0.5191 4.2521 5.5231 20 6 -1.0981 4.4443 4.2396 21 6 -1.2346 3.9860 2.9158 22 6 -2.4128 4.2156 2.2117 23 6 -3.4514 4.8959 2.8132 24 6 -3.3337 5.3534 4.1142 25 6 -2.1644 5.1345 4.8394 26 6 -2.0468 5.6244 6.2246 27 8 -1.0248 5.4304 6.8528 28 8 -3.0728 6.2863 6.7947 29 6 -2.8869 6.7391 8.1617 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8293 -0.0604 -2.9502 36 1 2.2719 2.1232 1.9977 37 1 -2.5139 3.8620 1.1963 38 1 -4.3646 5.0722 2.2643 39 1 -4.1558 5.8840 4.5715 40 1 -2.0375 7.4209 8.2063 41 1 -3.7854 7.2561 8.4986 42 1 -2.6980 5.8807 8.8063 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154149479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:31 Heat of formation + Delta-G solvation = -38.172904 kcal Electronic energy + Delta-G solvation = -27711.773933 eV Core-core repulsion = 23658.287854 eV Total energy + Delta-G solvation = -4053.486078 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.64215 -40.61630 -38.79458 -37.78987 -36.79846 -35.06865 -32.80423 -32.33809 -31.11621 -30.46704 -30.12948 -28.01170 -27.01632 -24.65510 -24.07605 -22.79052 -22.51964 -21.74500 -20.03219 -19.33193 -18.46468 -18.14306 -17.36706 -17.04258 -16.76763 -16.22640 -15.79719 -15.49471 -15.29884 -15.18137 -14.35991 -14.28148 -14.27087 -13.99655 -13.71480 -13.15288 -12.70034 -12.66410 -12.30140 -12.19908 -12.05870 -11.99713 -11.51499 -11.24325 -11.21790 -11.07276 -10.96959 -10.82558 -10.80781 -10.32985 -10.25010 -10.15267 -9.63062 -9.31068 -9.04474 -9.03919 -8.48611 -8.33430 -7.83261 -6.10830 -4.19769 0.16517 1.16081 1.71182 2.27748 2.32671 2.65390 3.28138 3.32998 3.34686 3.42616 3.79929 3.93863 4.19662 4.35205 4.44628 4.50754 4.65849 4.71442 4.79388 4.92845 5.03402 5.12563 5.20801 5.30190 5.55435 5.58663 5.84616 5.90628 6.13710 6.22756 6.41099 6.47680 6.48138 6.66972 6.88934 7.06622 7.19743 7.32560 7.34568 7.41111 7.61798 7.70334 7.81871 7.92007 8.18121 8.64400 8.76594 9.05363 9.46841 10.94541 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.022516 B = 0.002644 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.278891 B =10587.035916 C =11430.447481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.053 0.947 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.687 5.687 14 C 0.587 3.413 15 O -0.536 6.536 16 C 0.034 3.966 17 N -0.211 5.211 18 N -0.408 5.408 19 H 0.453 0.547 20 C 0.123 3.877 21 C -0.128 4.128 22 C 0.014 3.986 23 C -0.168 4.168 24 C -0.012 4.012 25 C -0.148 4.148 26 C 0.517 3.483 27 O -0.522 6.522 28 O -0.352 6.352 29 C 0.037 3.963 30 H 0.023 0.977 31 H 0.051 0.949 32 H 0.038 0.962 33 H 0.032 0.968 34 H 0.101 0.899 35 H 0.265 0.735 36 H 0.396 0.604 37 H 0.151 0.849 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.064 0.936 41 H 0.103 0.897 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.821 10.904 16.333 24.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.071 0.929 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.334 5.334 14 C 0.369 3.631 15 O -0.412 6.412 16 C -0.139 4.139 17 N -0.039 5.039 18 N -0.126 5.126 19 H 0.300 0.700 20 C 0.006 3.994 21 C -0.135 4.135 22 C -0.006 4.006 23 C -0.188 4.188 24 C -0.033 4.033 25 C -0.153 4.153 26 C 0.364 3.636 27 O -0.412 6.412 28 O -0.269 6.269 29 C -0.057 4.057 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.119 0.881 35 H 0.075 0.925 36 H 0.229 0.771 37 H 0.169 0.831 38 H 0.159 0.841 39 H 0.164 0.836 40 H 0.083 0.917 41 H 0.122 0.878 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.959 10.425 16.105 23.725 hybrid contribution 0.902 0.361 0.851 1.292 sum -13.056 10.785 16.956 23.965 Atomic orbital electron populations 1.21851 0.98298 0.98182 1.01230 1.21949 0.92679 0.99615 1.02467 1.18891 0.94420 0.89281 0.80537 0.92904 1.21190 0.90584 1.39130 1.06372 0.92018 1.24866 0.98603 0.94764 0.95346 1.69880 1.35202 1.37560 1.09310 0.86507 0.84856 0.78325 0.77415 1.20162 1.21148 1.20186 1.46438 1.13824 1.54230 1.18936 1.16634 0.83416 0.79138 0.83932 1.90770 1.51767 1.60466 1.38224 1.23497 0.91533 1.04223 0.94624 1.73084 1.23345 1.09963 0.97534 1.43242 1.10039 1.44312 1.15054 0.69955 1.18794 0.87658 0.98546 0.94369 1.19424 0.96180 1.04802 0.93135 1.21073 0.89165 0.90374 0.99998 1.21068 1.00100 1.02353 0.95242 1.21386 0.94806 0.93529 0.93557 1.17799 0.95556 1.10048 0.91932 1.21039 0.80943 0.74697 0.86895 1.90778 1.30356 1.55680 1.64429 1.86535 1.42214 1.67387 1.30723 1.23306 1.03528 1.00041 0.78807 0.95761 0.92986 0.94328 0.94908 0.88096 0.92498 0.77098 0.83145 0.84100 0.83649 0.91729 0.87815 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.51 37.16 0.32 -2.72 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.75 2.24 -69.08 -0.15 6.60 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.53 -14.11 8.73 -34.44 -0.30 -14.41 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.43 11.29 55.43 0.63 -23.81 16 9 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.69 -14.75 5.02 -56.01 -0.28 -15.03 16 14 C 0.59 12.03 6.38 -12.52 -0.08 11.95 16 15 O -0.54 -11.95 13.51 5.27 0.07 -11.88 16 16 C 0.03 0.60 7.33 -80.72 -0.59 0.01 16 17 N -0.21 -3.42 11.81 34.49 0.41 -3.01 16 18 N -0.41 -5.72 6.69 32.49 0.22 -5.50 16 19 H 0.45 5.50 7.63 -190.49 -1.45 4.05 16 20 C 0.12 1.71 6.94 -83.97 -0.58 1.12 16 21 C -0.13 -1.94 6.34 -105.07 -0.67 -2.61 16 22 C 0.01 0.18 9.90 -39.34 -0.39 -0.21 16 23 C -0.17 -1.55 10.01 -39.62 -0.40 -1.95 16 24 C -0.01 -0.11 9.59 -39.11 -0.38 -0.49 16 25 C -0.15 -1.70 5.88 -104.93 -0.62 -2.32 16 26 C 0.52 5.79 7.89 34.46 0.27 6.06 16 27 O -0.52 -6.73 15.07 -19.28 -0.29 -7.02 16 28 O -0.35 -3.13 9.80 -40.64 -0.40 -3.53 16 29 C 0.04 0.22 10.57 101.05 1.07 1.29 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 32 H 0.04 0.83 5.64 -51.93 -0.29 0.53 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 35 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.40 7.87 8.28 -40.82 -0.34 7.53 16 37 H 0.15 1.91 7.62 -52.49 -0.40 1.51 16 38 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.15 0.90 7.59 -52.48 -0.40 0.50 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 358.04 15.07 5.40 5.40 Total: -1.00 -30.88 358.04 -8.08 -38.96 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.07 Total: 8.99 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -2.74 Total: 0.79 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.97 Total: -47.35 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.62 Total: -22.43 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.88 -8.08 -38.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154149479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.785 kcal (2) G-P(sol) polarization free energy of solvation -30.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds