Wall clock time and date at job start Tue Mar 31 2020 16:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21614 * 119.99522 * 0.02562 * 14 13 3 16 16 C 1.47434 * 120.00401 * 180.02562 * 14 13 3 17 17 N 1.31536 * 126.86673 * 359.68323 * 16 14 13 18 18 N 1.28378 * 111.91247 * 179.85215 * 17 16 14 19 19 H 0.97005 * 124.31848 * 180.18302 * 18 17 16 20 20 C 1.36558 * 111.35331 * 0.43394 * 18 17 16 21 21 C 1.40752 * 106.14834 * 359.74692 * 20 18 17 22 22 C 1.39162 * 120.27989 * 179.97438 * 21 20 18 23 23 C 1.37953 * 119.87781 * 0.02562 * 22 21 20 24 24 C 1.38418 * 120.58512 * 359.97438 * 23 22 21 25 25 C 1.39320 * 120.57372 * 359.97438 * 24 23 22 26 26 C 1.47398 * 120.25995 * 180.02562 * 25 24 23 27 27 O 1.21519 * 119.99561 * 179.97438 * 26 25 24 28 28 O 1.34754 * 120.00434 * 0.02562 * 26 25 24 29 29 C 1.45195 * 117.00176 * 179.97438 * 28 26 25 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 34 34 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 35 35 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 36 36 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 37 37 H 1.08000 * 120.05736 * 180.02562 * 22 21 20 38 38 H 1.07997 * 119.70167 * 180.02562 * 23 22 21 39 39 H 1.08003 * 119.71154 * 180.02562 * 24 23 22 40 40 H 1.09006 * 109.47070 * 60.00005 * 29 28 26 41 41 H 1.09003 * 109.47442 * 179.97438 * 29 28 26 42 42 H 1.08999 * 109.47404 * 299.99822 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3417 2.6318 0.4318 16 6 0.0452 3.3241 2.6265 17 7 0.7712 3.4329 3.7179 18 7 0.1502 4.0674 4.6452 19 1 0.5191 4.2521 5.5231 20 6 -1.0981 4.4443 4.2396 21 6 -1.2346 3.9860 2.9158 22 6 -2.4128 4.2156 2.2117 23 6 -3.4514 4.8959 2.8132 24 6 -3.3337 5.3534 4.1142 25 6 -2.1644 5.1345 4.8394 26 6 -2.0468 5.6244 6.2246 27 8 -1.0248 5.4304 6.8528 28 8 -3.0728 6.2863 6.7947 29 6 -2.8869 6.7391 8.1617 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8293 -0.0604 -2.9502 36 1 2.2719 2.1232 1.9977 37 1 -2.5139 3.8620 1.1963 38 1 -4.3646 5.0722 2.2643 39 1 -4.1558 5.8840 4.5715 40 1 -2.0375 7.4209 8.2063 41 1 -3.7854 7.2561 8.4986 42 1 -2.6980 5.8807 8.8063 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154149479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:30 Heat of formation + Delta-G solvation = -58.338052 kcal Electronic energy + Delta-G solvation = -27712.648359 eV Core-core repulsion = 23658.287854 eV Total energy + Delta-G solvation = -4054.360505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.74970 -41.43332 -40.47720 -38.70386 -37.58245 -36.93917 -34.37895 -33.80524 -32.78397 -31.45075 -31.34479 -28.98258 -28.55569 -25.77721 -25.44709 -24.49844 -23.49969 -22.72663 -21.67751 -21.04581 -19.54002 -19.11558 -18.76173 -18.02925 -17.66662 -17.53911 -17.19654 -16.95567 -16.65022 -16.15555 -16.09281 -15.93175 -15.25842 -14.92569 -14.68376 -14.56189 -14.42968 -13.85081 -13.46928 -13.35133 -13.18787 -13.15807 -12.93028 -12.88950 -12.84805 -12.65557 -12.25421 -12.17709 -12.03983 -11.85701 -11.70287 -11.58693 -11.33087 -11.07113 -10.99365 -10.51927 -10.00716 -9.72302 -9.30220 -8.15274 -6.31895 -0.78245 0.22999 0.49547 1.38401 1.45354 1.46933 1.54330 1.54584 1.57590 2.27560 2.30352 2.49944 2.64571 3.13849 3.22163 3.26091 3.61253 3.75539 3.88244 4.20022 4.26482 4.30976 4.34792 4.48144 4.52977 4.60101 4.69444 4.75673 4.77802 4.93355 5.09049 5.14454 5.22901 5.28107 5.33830 5.45175 5.52637 5.60023 5.63995 5.78917 5.84535 5.92579 6.16777 6.53053 6.56730 6.72952 6.93109 7.29054 7.45058 8.89891 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.022516 B = 0.002644 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.278891 B =10587.035916 C =11430.447481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.279 3.721 4 H 0.010 0.990 5 C -0.552 4.552 6 H 0.066 0.934 7 C 0.020 3.980 8 N -0.910 5.910 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.690 5.690 14 C 0.590 3.410 15 O -0.560 6.560 16 C 0.001 3.999 17 N -0.214 5.214 18 N -0.398 5.398 19 H 0.460 0.540 20 C 0.110 3.890 21 C -0.145 4.145 22 C -0.010 4.010 23 C -0.141 4.141 24 C 0.007 3.993 25 C -0.154 4.154 26 C 0.519 3.481 27 O -0.545 6.545 28 O -0.346 6.346 29 C 0.029 3.971 30 H 0.047 0.953 31 H 0.034 0.966 32 H 0.039 0.961 33 H 0.036 0.964 34 H 0.077 0.923 35 H 0.266 0.734 36 H 0.403 0.597 37 H 0.141 0.859 38 H 0.182 0.818 39 H 0.186 0.814 40 H 0.062 0.938 41 H 0.138 0.862 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.591 12.335 18.341 27.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.028 0.972 5 C -0.590 4.590 6 H 0.084 0.916 7 C -0.181 4.181 8 N -0.548 5.548 9 Si 0.793 3.207 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.198 1.198 13 N -0.338 5.338 14 C 0.374 3.626 15 O -0.438 6.438 16 C -0.170 4.170 17 N -0.043 5.043 18 N -0.119 5.119 19 H 0.309 0.691 20 C -0.006 4.006 21 C -0.152 4.152 22 C -0.030 4.030 23 C -0.159 4.159 24 C -0.013 4.013 25 C -0.158 4.158 26 C 0.367 3.633 27 O -0.437 6.437 28 O -0.262 6.262 29 C -0.064 4.064 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.237 0.763 37 H 0.159 0.841 38 H 0.199 0.801 39 H 0.203 0.797 40 H 0.081 0.919 41 H 0.156 0.844 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.759 11.876 18.142 26.805 hybrid contribution 1.275 0.050 0.352 1.324 sum -14.484 11.926 18.494 26.345 Atomic orbital electron populations 1.21684 0.96653 0.99374 1.00430 1.21799 0.94080 0.98814 1.01360 1.18503 0.93787 0.89392 0.80703 0.97223 1.21505 0.91403 1.39300 1.06785 0.91583 1.25695 1.03134 0.94288 0.94939 1.70018 1.36997 1.38077 1.09729 0.85464 0.79312 0.78374 0.77575 1.19238 1.20816 1.19841 1.46215 1.14703 1.54850 1.18041 1.16907 0.82523 0.78374 0.84797 1.90736 1.52277 1.61239 1.39537 1.22948 0.93548 1.06607 0.93946 1.72967 1.23712 1.10046 0.97624 1.43236 1.10328 1.43494 1.14805 0.69131 1.18999 0.87978 0.99537 0.94131 1.19570 0.96157 1.05347 0.94170 1.21200 0.89613 0.92200 0.99993 1.21513 1.00020 0.99224 0.95181 1.21883 0.94567 0.91836 0.93015 1.18047 0.95603 1.09645 0.92553 1.20993 0.81063 0.74557 0.86697 1.90771 1.31373 1.56635 1.64958 1.86518 1.40958 1.66621 1.32093 1.23632 1.05335 1.00179 0.77221 0.93440 0.94670 0.94165 0.94471 0.90472 0.92446 0.76268 0.84090 0.80070 0.79688 0.91917 0.84373 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.51 71.98 0.61 -4.97 16 2 C -0.12 -6.07 5.45 30.60 0.17 -5.91 16 3 C 0.28 14.60 2.24 44.25 0.10 14.70 16 4 H 0.01 0.60 7.58 -2.39 -0.02 0.58 16 5 C -0.55 -29.95 8.73 25.60 0.22 -29.72 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.41 16 7 C 0.02 1.09 5.29 84.66 0.45 1.54 16 8 N -0.91 -51.85 11.29 21.45 0.24 -51.61 16 9 Si 0.97 42.76 29.54 68.60 2.03 44.79 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 13 N -0.69 -30.99 5.02 -449.36 -2.25 -33.24 16 14 C 0.59 25.34 6.38 86.67 0.55 25.90 16 15 O -0.56 -26.29 13.51 -4.08 -0.06 -26.35 16 16 C 0.00 0.02 7.33 43.90 0.32 0.34 16 17 N -0.21 -7.08 11.81 -44.81 -0.53 -7.61 16 18 N -0.40 -11.17 6.69 -51.11 -0.34 -11.51 16 19 H 0.46 11.15 7.63 -220.03 -1.68 9.47 16 20 C 0.11 2.96 6.94 39.57 0.27 3.23 16 21 C -0.15 -4.42 6.34 -20.15 -0.13 -4.55 16 22 C -0.01 -0.24 9.90 22.42 0.22 -0.01 16 23 C -0.14 -2.08 10.01 22.25 0.22 -1.86 16 24 C 0.01 0.10 9.59 22.57 0.22 0.31 16 25 C -0.15 -3.16 5.88 -20.06 -0.12 -3.28 16 26 C 0.52 10.42 7.89 70.23 0.55 10.98 16 27 O -0.54 -13.33 15.07 19.77 0.30 -13.03 16 28 O -0.35 -4.98 9.80 -56.65 -0.56 -5.53 16 29 C 0.03 0.26 10.57 113.37 1.20 1.46 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.03 1.66 7.84 -2.39 -0.02 1.65 16 32 H 0.04 1.77 5.64 -2.38 -0.01 1.76 16 33 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.08 4.25 5.95 -2.39 -0.01 4.23 16 35 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 36 H 0.40 16.68 8.28 -92.71 -0.77 15.92 16 37 H 0.14 3.64 7.62 -2.91 -0.02 3.61 16 38 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 39 H 0.19 1.16 7.59 -2.91 -0.02 1.14 16 40 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 41 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -70.02 358.04 2.35 -67.67 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: -1.35 Total: 28.28 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 4.87 Total: 8.15 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -2.88 Total: -103.97 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: -0.31 Total: -44.91 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -70.02 2.35 -67.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154149479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.331 kcal (2) G-P(sol) polarization free energy of solvation -70.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds