Wall clock time and date at job start Tue Mar 31 2020 16:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46886 * 2 1 4 4 C 1.53005 * 109.46886 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.46983 * 180.02562 * 4 3 2 6 6 C 1.36841 * 119.99830 * 285.01544 * 5 4 3 7 7 H 1.07999 * 119.99908 * 315.24245 * 6 5 4 8 8 C 1.39060 * 119.99978 * 135.23730 * 6 5 4 9 9 N 1.31353 * 120.00204 * 339.88297 * 8 6 5 10 10 Si 1.86800 * 119.99891 * 159.87987 * 8 6 5 11 11 H 1.48497 * 109.47085 * 65.00608 * 10 8 6 12 12 H 1.48500 * 109.47344 * 185.00493 * 10 8 6 13 13 H 1.48502 * 109.47131 * 305.00581 * 10 8 6 14 14 C 1.34773 * 120.00072 * 105.01883 * 5 4 3 15 15 O 1.21595 * 119.99820 * 186.17848 * 14 5 4 16 16 C 1.47688 * 120.00070 * 6.17314 * 14 5 4 17 17 C 1.40612 * 119.72837 * 323.62804 * 16 14 5 18 18 C 1.35996 * 120.89631 * 180.02562 * 17 16 14 19 19 C 1.40104 * 119.76449 * 0.02562 * 18 17 16 20 20 C 1.41226 * 122.49736 * 179.97438 * 19 18 17 21 21 O 1.35658 * 120.50003 * 0.02562 * 20 19 18 22 22 N 1.31743 * 118.99800 * 180.02562 * 20 19 18 23 23 N 1.28072 * 123.42687 * 359.97438 * 22 20 19 24 24 C 1.31816 * 123.34423 * 0.02562 * 23 22 20 25 25 O 1.35588 * 120.54178 * 180.02562 * 24 23 22 26 26 C 1.41355 * 118.91641 * 0.02562 * 24 23 22 27 27 C 1.38819 * 119.72712 * 143.92485 * 16 14 5 28 28 H 1.09001 * 109.47035 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47273 * 300.00051 * 1 2 3 30 30 H 1.09001 * 109.46974 * 60.00039 * 1 2 3 31 31 H 1.09002 * 109.46781 * 240.00056 * 2 1 3 32 32 H 1.09001 * 109.46974 * 119.99961 * 2 1 3 33 33 H 1.08999 * 109.47206 * 59.99908 * 3 2 1 34 34 H 1.09001 * 109.47282 * 299.99772 * 3 2 1 35 35 H 1.08999 * 109.47273 * 59.99949 * 4 3 2 36 36 H 1.09001 * 109.46974 * 299.99961 * 4 3 2 37 37 H 0.96997 * 119.99965 * 185.03491 * 9 8 6 38 38 H 1.08007 * 119.55483 * 0.02598 * 17 16 14 39 39 H 1.08003 * 120.11591 * 180.02562 * 18 17 16 40 40 H 0.96695 * 114.00708 * 89.99816 * 21 20 19 41 41 H 0.96701 * 114.00341 * 269.97955 * 25 24 23 42 42 H 1.07995 * 120.40899 * 359.74626 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 3.9964 3.5718 -1.1442 7 1 4.2987 3.1417 -2.0876 8 6 3.5442 4.8858 -1.0922 9 7 2.8198 5.2913 -0.0743 10 14 3.9672 6.0743 -2.4699 11 1 3.3227 5.6221 -3.7290 12 1 3.4749 7.4314 -2.1215 13 1 5.4402 6.1143 -2.6544 14 6 4.5686 3.3576 1.1274 15 8 4.8697 4.5353 1.1602 16 6 4.7619 2.5124 2.3229 17 6 3.8293 1.5034 2.6217 18 6 3.9838 0.7117 3.7166 19 6 5.0853 0.9005 4.5616 20 6 5.3018 0.1125 5.7134 21 8 4.4323 -0.8742 6.0461 22 7 6.3610 0.3501 6.4600 23 7 7.2174 1.2658 6.1985 24 6 7.1268 2.0659 5.1548 25 8 8.0673 3.0168 4.9319 26 6 6.0333 1.9162 4.2717 27 6 5.8596 2.7246 3.1458 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9285 0.8891 37 1 2.4432 6.1852 -0.0725 38 1 2.9787 1.3551 1.9729 39 1 3.2599 -0.0598 3.9340 40 1 4.6480 -1.7348 5.6616 41 1 7.8727 3.8677 5.3482 42 1 6.5742 3.5006 2.9146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154314142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:36 Heat of formation + Delta-G solvation = -11.546767 kcal Electronic energy + Delta-G solvation = -28683.367577 eV Core-core repulsion = 24631.036094 eV Total energy + Delta-G solvation = -4052.331482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.55002 -39.40877 -38.38164 -37.17403 -36.92653 -35.76161 -33.62067 -32.37197 -31.67028 -31.12851 -29.95031 -28.40332 -25.98024 -24.52597 -24.30661 -22.98199 -22.32622 -20.76233 -20.25329 -19.58913 -18.83501 -18.24229 -17.94670 -16.56304 -16.08730 -15.89001 -15.59640 -15.04661 -14.93862 -14.61278 -14.17371 -14.09575 -13.74273 -13.61075 -13.46989 -12.94850 -12.83723 -12.62144 -12.39967 -12.21499 -12.06194 -11.89597 -11.46852 -11.41086 -11.18876 -11.08223 -10.98404 -10.86727 -10.69017 -10.65060 -10.34396 -10.21783 -10.04036 -9.30146 -9.07611 -8.96014 -8.35667 -8.24480 -7.34233 -6.32474 -4.04013 0.06745 0.50652 1.63987 2.66999 3.18144 3.19940 3.28194 3.31227 3.37866 3.70437 4.09047 4.25246 4.29281 4.50721 4.61426 4.86397 4.90027 5.00528 5.14082 5.20792 5.27322 5.34263 5.37610 5.40413 5.59094 5.68032 5.75090 5.90567 5.95466 5.99734 6.04214 6.08295 6.14237 6.20325 6.27871 6.37932 6.49499 6.64524 6.69510 6.94061 7.15594 7.27887 7.42077 8.05374 8.74429 8.79316 8.91070 9.39274 10.01578 10.74500 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.011884 B = 0.004358 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.481938 B = 6422.841960 C = 8451.692357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.131 4.131 4 C 0.080 3.920 5 N -0.432 5.432 6 C -0.346 4.346 7 H 0.084 0.916 8 C 0.074 3.926 9 N -0.814 5.814 10 Si 0.914 3.086 11 H -0.277 1.277 12 H -0.285 1.285 13 H -0.271 1.271 14 C 0.490 3.510 15 O -0.524 6.524 16 C -0.063 4.063 17 C -0.090 4.090 18 C -0.099 4.099 19 C -0.089 4.089 20 C 0.288 3.712 21 O -0.469 6.469 22 N -0.266 5.266 23 N -0.265 5.265 24 C 0.296 3.704 25 O -0.467 6.467 26 C -0.086 4.086 27 C -0.056 4.056 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.268 0.732 38 H 0.159 0.841 39 H 0.142 0.858 40 H 0.405 0.595 41 H 0.409 0.591 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.811 -11.032 4.869 12.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.169 4.169 4 C -0.043 4.043 5 N -0.151 5.151 6 C -0.472 4.472 7 H 0.101 0.899 8 C -0.139 4.139 9 N -0.446 5.446 10 Si 0.741 3.259 11 H -0.203 1.203 12 H -0.210 1.210 13 H -0.197 1.197 14 C 0.278 3.722 15 O -0.403 6.403 16 C -0.069 4.069 17 C -0.109 4.109 18 C -0.119 4.119 19 C -0.097 4.097 20 C 0.091 3.909 21 O -0.274 6.274 22 N -0.111 5.111 23 N -0.110 5.110 24 C 0.098 3.902 25 O -0.273 6.273 26 C -0.094 4.094 27 C -0.077 4.077 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.176 0.824 39 H 0.160 0.840 40 H 0.263 0.737 41 H 0.268 0.732 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.161 -10.643 6.329 12.384 hybrid contribution -0.845 0.991 -1.868 2.277 sum -0.684 -9.653 4.461 10.655 Atomic orbital electron populations 1.21753 0.96153 1.00851 1.02017 1.21541 0.95733 0.97494 1.01463 1.21948 0.96007 0.95279 1.03696 1.22226 0.93952 0.86694 1.01477 1.43164 1.51797 1.10292 1.09882 1.19015 1.46546 0.94909 0.86761 0.89864 1.25306 0.93584 0.98378 0.96611 1.69797 1.26070 1.19001 1.29687 0.86239 0.79461 0.79660 0.80564 1.20278 1.20998 1.19653 1.17800 0.83407 0.87692 0.83327 1.90662 1.52427 1.15037 1.82131 1.20917 0.94035 0.95369 0.96573 1.22058 0.99768 0.93082 0.95998 1.20785 0.96446 1.00900 0.93814 1.18979 0.97338 0.97276 0.96116 1.20916 0.89003 0.91367 0.89595 1.84726 1.46830 1.20532 1.75308 1.72285 1.00295 1.12834 1.25671 1.72379 1.19485 1.02881 1.16280 1.21003 0.86624 0.91975 0.90553 1.84701 1.44165 1.23264 1.75166 1.18923 0.94628 0.97758 0.98125 1.21182 0.97439 0.97725 0.91380 0.93307 0.92847 0.92704 0.92119 0.92575 0.91897 0.90267 0.92283 0.90581 0.92143 0.82367 0.83986 0.73679 0.73198 0.83307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.12 -1.47 5.93 -26.73 -0.16 -1.63 16 3 C -0.13 -2.09 4.51 -26.73 -0.12 -2.21 16 4 C 0.08 1.39 4.86 -4.04 -0.02 1.37 16 5 N -0.43 -9.87 2.55 -115.94 -0.30 -10.16 16 6 C -0.35 -8.73 8.98 -15.01 -0.13 -8.87 16 7 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 8 C 0.07 1.94 4.32 -17.45 -0.08 1.87 16 9 N -0.81 -22.47 11.72 55.50 0.65 -21.82 16 10 Si 0.91 20.58 29.60 -169.99 -5.03 15.55 16 11 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 14 C 0.49 11.65 6.80 -12.40 -0.08 11.57 16 15 O -0.52 -14.65 14.36 5.28 0.08 -14.58 16 16 C -0.06 -1.20 5.45 -104.93 -0.57 -1.77 16 17 C -0.09 -1.39 7.26 -39.49 -0.29 -1.68 16 18 C -0.10 -1.31 9.59 -39.69 -0.38 -1.69 16 19 C -0.09 -1.29 5.76 -106.65 -0.61 -1.91 16 20 C 0.29 4.00 7.92 -16.46 -0.13 3.87 16 21 O -0.47 -4.98 12.95 -18.68 -0.24 -5.22 16 22 N -0.27 -4.23 11.42 30.80 0.35 -3.88 16 23 N -0.27 -4.33 11.42 30.83 0.35 -3.98 16 24 C 0.30 4.51 7.93 -16.37 -0.13 4.38 16 25 O -0.47 -6.08 12.96 -18.46 -0.24 -6.32 16 26 C -0.09 -1.36 5.75 -106.76 -0.61 -1.98 16 27 C -0.06 -0.97 9.20 -38.82 -0.36 -1.33 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 1.09 7.04 -51.93 -0.37 0.72 16 34 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.17 3.91 -51.93 -0.20 0.97 16 37 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.16 2.36 3.49 -52.48 -0.18 2.18 16 39 H 0.14 1.41 7.72 -52.48 -0.41 1.00 16 40 H 0.40 2.09 9.06 45.56 0.41 2.50 16 41 H 0.41 3.28 9.06 45.56 0.41 3.70 16 42 H 0.15 2.59 7.69 -52.49 -0.40 2.19 16 LS Contribution 353.56 15.07 5.33 5.33 Total: -1.00 -34.08 353.56 -5.60 -39.67 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -3.24 Total: 6.71 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -3.31 Total: -1.30 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 1.06 Total: -39.84 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.41 Total: -26.11 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.08 -5.60 -39.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154314142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.127 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds