Wall clock time and date at job start Tue Mar 31 2020 16:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46886 * 2 1 4 4 C 1.53005 * 109.46886 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.46983 * 180.02562 * 4 3 2 6 6 C 1.36841 * 119.99830 * 285.01544 * 5 4 3 7 7 H 1.07999 * 119.99908 * 315.24245 * 6 5 4 8 8 C 1.39060 * 119.99978 * 135.23730 * 6 5 4 9 9 N 1.31353 * 120.00204 * 339.88297 * 8 6 5 10 10 Si 1.86800 * 119.99891 * 159.87987 * 8 6 5 11 11 H 1.48497 * 109.47085 * 65.00608 * 10 8 6 12 12 H 1.48500 * 109.47344 * 185.00493 * 10 8 6 13 13 H 1.48502 * 109.47131 * 305.00581 * 10 8 6 14 14 C 1.34773 * 120.00072 * 105.01883 * 5 4 3 15 15 O 1.21595 * 119.99820 * 186.17848 * 14 5 4 16 16 C 1.47688 * 120.00070 * 6.17314 * 14 5 4 17 17 C 1.40612 * 119.72837 * 323.62804 * 16 14 5 18 18 C 1.35996 * 120.89631 * 180.02562 * 17 16 14 19 19 C 1.40104 * 119.76449 * 0.02562 * 18 17 16 20 20 C 1.41226 * 122.49736 * 179.97438 * 19 18 17 21 21 O 1.35658 * 120.50003 * 0.02562 * 20 19 18 22 22 N 1.31743 * 118.99800 * 180.02562 * 20 19 18 23 23 N 1.28072 * 123.42687 * 359.97438 * 22 20 19 24 24 C 1.31816 * 123.34423 * 0.02562 * 23 22 20 25 25 O 1.35588 * 120.54178 * 180.02562 * 24 23 22 26 26 C 1.41355 * 118.91641 * 0.02562 * 24 23 22 27 27 C 1.38819 * 119.72712 * 143.92485 * 16 14 5 28 28 H 1.09001 * 109.47035 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47273 * 300.00051 * 1 2 3 30 30 H 1.09001 * 109.46974 * 60.00039 * 1 2 3 31 31 H 1.09002 * 109.46781 * 240.00056 * 2 1 3 32 32 H 1.09001 * 109.46974 * 119.99961 * 2 1 3 33 33 H 1.08999 * 109.47206 * 59.99908 * 3 2 1 34 34 H 1.09001 * 109.47282 * 299.99772 * 3 2 1 35 35 H 1.08999 * 109.47273 * 59.99949 * 4 3 2 36 36 H 1.09001 * 109.46974 * 299.99961 * 4 3 2 37 37 H 0.96997 * 119.99965 * 185.03491 * 9 8 6 38 38 H 1.08007 * 119.55483 * 0.02598 * 17 16 14 39 39 H 1.08003 * 120.11591 * 180.02562 * 18 17 16 40 40 H 0.96695 * 114.00708 * 89.99816 * 21 20 19 41 41 H 0.96701 * 114.00341 * 269.97955 * 25 24 23 42 42 H 1.07995 * 120.40899 * 359.74626 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 3.9964 3.5718 -1.1442 7 1 4.2987 3.1417 -2.0876 8 6 3.5442 4.8858 -1.0922 9 7 2.8198 5.2913 -0.0743 10 14 3.9672 6.0743 -2.4699 11 1 3.3227 5.6221 -3.7290 12 1 3.4749 7.4314 -2.1215 13 1 5.4402 6.1143 -2.6544 14 6 4.5686 3.3576 1.1274 15 8 4.8697 4.5353 1.1602 16 6 4.7619 2.5124 2.3229 17 6 3.8293 1.5034 2.6217 18 6 3.9838 0.7117 3.7166 19 6 5.0853 0.9005 4.5616 20 6 5.3018 0.1125 5.7134 21 8 4.4323 -0.8742 6.0461 22 7 6.3610 0.3501 6.4600 23 7 7.2174 1.2658 6.1985 24 6 7.1268 2.0659 5.1548 25 8 8.0673 3.0168 4.9319 26 6 6.0333 1.9162 4.2717 27 6 5.8596 2.7246 3.1458 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9285 0.8891 37 1 2.4432 6.1852 -0.0725 38 1 2.9787 1.3551 1.9729 39 1 3.2599 -0.0598 3.9340 40 1 4.6480 -1.7348 5.6616 41 1 7.8727 3.8677 5.3482 42 1 6.5742 3.5006 2.9146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154314142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:35 Heat of formation + Delta-G solvation = -41.154856 kcal Electronic energy + Delta-G solvation = -28684.651480 eV Core-core repulsion = 24631.036094 eV Total energy + Delta-G solvation = -4053.615386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.73867 -40.93708 -39.38443 -38.59033 -37.92522 -37.25993 -35.16133 -33.93809 -32.89175 -32.58301 -31.14552 -29.71052 -27.58933 -25.78237 -25.73427 -24.26737 -23.55587 -21.93284 -21.69920 -20.75557 -19.96339 -19.61700 -19.15482 -18.18650 -17.29116 -17.12105 -16.98401 -16.67679 -16.36203 -15.88119 -15.67882 -15.29318 -15.12132 -14.94586 -14.64083 -14.26521 -14.16272 -13.79824 -13.59489 -13.48809 -13.38901 -13.11971 -12.94645 -12.84521 -12.74407 -12.59773 -12.31814 -12.30428 -12.01066 -12.00260 -11.68975 -11.39396 -11.23478 -10.86389 -10.51319 -10.41702 -10.06755 -9.49394 -9.18497 -8.26297 -6.02118 -1.07958 -0.74249 0.44545 1.36117 1.44203 1.47503 1.49259 2.14630 2.20897 2.30376 2.46787 2.71383 2.88254 3.11431 3.20039 3.39816 3.61983 3.78722 3.86626 4.01591 4.09716 4.15278 4.22061 4.36264 4.42204 4.52410 4.56177 4.70083 4.72738 4.88456 4.91777 5.01349 5.02719 5.08719 5.19790 5.21179 5.41331 5.43671 5.46599 5.49292 5.66962 6.15514 6.38341 6.50534 6.93721 7.08890 7.56131 7.59083 8.20697 8.81111 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.011884 B = 0.004358 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.481938 B = 6422.841960 C = 8451.692357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.119 4.119 4 C 0.076 3.924 5 N -0.445 5.445 6 C -0.365 4.365 7 H 0.086 0.914 8 C 0.030 3.970 9 N -0.854 5.854 10 Si 0.967 3.033 11 H -0.256 1.256 12 H -0.290 1.290 13 H -0.279 1.279 14 C 0.481 3.519 15 O -0.580 6.580 16 C -0.084 4.084 17 C -0.095 4.095 18 C -0.067 4.067 19 C -0.088 4.088 20 C 0.310 3.690 21 O -0.462 6.462 22 N -0.287 5.287 23 N -0.281 5.281 24 C 0.299 3.701 25 O -0.473 6.473 26 C -0.093 4.093 27 C -0.055 4.055 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.045 0.955 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.261 0.739 38 H 0.166 0.834 39 H 0.190 0.810 40 H 0.432 0.568 41 H 0.428 0.572 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.447 -14.435 6.071 15.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.158 4.158 4 C -0.046 4.046 5 N -0.164 5.164 6 C -0.492 4.492 7 H 0.103 0.897 8 C -0.179 4.179 9 N -0.488 5.488 10 Si 0.792 3.208 11 H -0.180 1.180 12 H -0.215 1.215 13 H -0.205 1.205 14 C 0.271 3.729 15 O -0.463 6.463 16 C -0.089 4.089 17 C -0.114 4.114 18 C -0.087 4.087 19 C -0.097 4.097 20 C 0.112 3.888 21 O -0.272 6.272 22 N -0.131 5.131 23 N -0.126 5.126 24 C 0.100 3.900 25 O -0.282 6.282 26 C -0.101 4.101 27 C -0.076 4.076 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.071 0.929 38 H 0.183 0.817 39 H 0.207 0.793 40 H 0.296 0.704 41 H 0.291 0.709 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.484 -14.112 7.514 15.995 hybrid contribution -0.565 1.875 -2.047 2.833 sum -1.048 -12.237 5.467 13.443 Atomic orbital electron populations 1.21756 0.95526 1.02174 1.01334 1.21505 0.96206 0.94335 1.03298 1.21807 0.94837 0.97919 1.01223 1.22486 0.94872 0.84013 1.03199 1.43385 1.51912 1.12028 1.09084 1.19244 1.46559 0.95576 0.87821 0.89661 1.26032 0.93456 0.99901 0.98480 1.69903 1.28254 1.18803 1.31824 0.85424 0.78580 0.77645 0.79191 1.18045 1.21534 1.20476 1.18537 0.82093 0.87590 0.84727 1.90606 1.54485 1.17667 1.83521 1.20575 0.96134 0.96576 0.95644 1.22025 0.99221 0.92776 0.97410 1.21180 0.95919 1.00187 0.91373 1.19241 0.97193 0.96685 0.96539 1.20836 0.88256 0.91473 0.88275 1.84700 1.45634 1.21443 1.75421 1.72226 1.01154 1.13198 1.26553 1.72349 1.20218 1.03323 1.16673 1.21008 0.86581 0.92221 0.90146 1.84660 1.43818 1.24173 1.75539 1.18971 0.95484 0.98062 0.97545 1.21067 0.96973 0.97785 0.91815 0.90887 0.93128 0.93957 0.91148 0.89788 0.93585 0.93647 0.91431 0.87921 0.92935 0.81685 0.79324 0.70398 0.70872 0.84502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.91 71.98 0.71 -2.25 16 2 C -0.12 -2.41 5.93 30.60 0.18 -2.23 16 3 C -0.12 -3.76 4.51 30.60 0.14 -3.62 16 4 C 0.08 2.61 4.86 86.38 0.42 3.03 16 5 N -0.45 -20.93 2.55 -638.99 -1.63 -22.56 16 6 C -0.36 -19.13 8.98 84.11 0.76 -18.38 16 7 H 0.09 4.28 7.91 -2.91 -0.02 4.25 16 8 C 0.03 1.63 4.32 84.96 0.37 1.99 16 9 N -0.85 -49.72 11.72 21.68 0.25 -49.46 16 10 Si 0.97 43.87 29.60 68.60 2.03 45.90 16 11 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 12 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 13 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 14 C 0.48 23.75 6.80 86.74 0.59 24.34 16 15 O -0.58 -34.28 14.36 -4.01 -0.06 -34.33 16 16 C -0.08 -3.18 5.45 -20.06 -0.11 -3.29 16 17 C -0.10 -2.72 7.26 22.33 0.16 -2.56 16 18 C -0.07 -1.46 9.59 22.20 0.21 -1.24 16 19 C -0.09 -2.25 5.76 -21.18 -0.12 -2.37 16 20 C 0.31 7.32 7.92 85.44 0.68 8.00 16 21 O -0.46 -7.28 12.95 -89.74 -1.16 -8.44 16 22 N -0.29 -8.30 11.42 -169.59 -1.94 -10.24 16 23 N -0.28 -8.66 11.42 -169.50 -1.94 -10.60 16 24 C 0.30 8.70 7.93 85.46 0.68 9.38 16 25 O -0.47 -11.99 12.96 -88.97 -1.15 -13.14 16 26 C -0.09 -2.78 5.75 -21.25 -0.12 -2.90 16 27 C -0.05 -1.91 9.20 22.76 0.21 -1.70 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.05 1.59 7.04 -2.39 -0.02 1.57 16 34 H 0.04 1.72 8.03 -2.39 -0.02 1.70 16 35 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.10 2.95 3.91 -2.39 -0.01 2.94 16 37 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 38 H 0.17 4.52 3.49 -2.91 -0.01 4.51 16 39 H 0.19 2.39 7.72 -2.91 -0.02 2.37 16 40 H 0.43 1.82 9.06 -74.06 -0.67 1.15 16 41 H 0.43 6.64 9.06 -74.06 -0.67 5.97 16 42 H 0.14 4.99 7.69 -2.91 -0.02 4.96 16 Total: -1.00 -78.94 353.56 -1.07 -80.01 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -0.23 Total: 16.66 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 4.75 Total: 6.20 kcal Atomic # 7 Polarization: -87.61 SS G_CDS: -5.24 Total: -92.86 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -2.37 Total: -55.92 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -78.94 -1.07 -80.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154314142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.856 kcal (2) G-P(sol) polarization free energy of solvation -78.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds