Wall clock time and date at job start Tue Mar 31 2020 16:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46933 * 2 1 4 4 H 1.09003 * 109.46955 * 55.00971 * 3 2 1 5 5 C 1.53008 * 109.46698 * 175.00127 * 3 2 1 6 6 N 1.46505 * 109.46644 * 175.00443 * 5 3 2 7 7 C 1.34776 * 119.99723 * 180.02562 * 6 5 3 8 8 O 1.21534 * 119.99960 * 359.97438 * 7 6 5 9 9 C 1.48015 * 120.00125 * 180.02562 * 7 6 5 10 10 C 1.39461 * 119.92058 * 359.97438 * 9 7 6 11 11 C 1.38445 * 120.30785 * 179.97438 * 10 9 7 12 12 C 1.38593 * 119.90122 * 0.02562 * 11 10 9 13 13 C 1.40987 * 120.05775 * 359.97428 * 12 11 10 14 14 C 1.38422 * 119.96235 * 0.02562 * 13 12 11 15 15 C 1.47836 * 105.89009 * 180.02562 * 13 12 11 16 16 O 1.21447 * 125.69057 * 179.97438 * 15 13 12 17 17 N 1.34501 * 108.61949 * 359.93010 * 15 13 12 18 18 C 1.34513 * 111.10790 * 0.08941 * 17 15 13 19 19 O 1.21433 * 125.72255 * 179.89483 * 18 17 15 20 20 N 1.46496 * 109.47456 * 295.00420 * 3 2 1 21 21 C 1.36935 * 120.00045 * 85.00073 * 20 3 2 22 22 H 1.07997 * 120.00246 * 0.02562 * 21 20 3 23 23 C 1.38815 * 119.99808 * 179.97438 * 21 20 3 24 24 N 1.31610 * 120.00270 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99551 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47394 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47047 * 120.00414 * 25 23 21 28 28 H 1.48502 * 109.47348 * 239.99980 * 25 23 21 29 29 H 1.08997 * 109.47110 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46830 * 299.99762 * 1 2 3 31 31 H 1.08998 * 109.47844 * 59.99227 * 1 2 3 32 32 H 1.09000 * 109.47071 * 240.00713 * 2 1 3 33 33 H 1.08993 * 109.47430 * 120.00646 * 2 1 3 34 34 H 1.09000 * 109.46776 * 55.00632 * 5 3 2 35 35 H 1.08998 * 109.47459 * 295.00037 * 5 3 2 36 36 H 0.97000 * 120.00344 * 0.02562 * 6 5 3 37 37 H 1.08001 * 119.85244 * 0.02562 * 10 9 7 38 38 H 1.08004 * 120.05237 * 179.75110 * 11 10 9 39 39 H 1.08001 * 120.19504 * 180.02562 * 14 13 12 40 40 H 0.97001 * 124.44454 * 179.97438 * 17 15 13 41 41 H 0.96995 * 119.99890 * 264.99888 * 20 3 2 42 42 H 0.97002 * 120.00256 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1257 6 7 4.0630 2.8169 0.0060 7 6 5.3857 3.0630 0.0859 8 8 6.1651 2.1464 0.2576 9 6 5.8890 4.4497 -0.0345 10 6 4.9932 5.5003 -0.2310 11 6 5.4552 6.8005 -0.3441 12 6 6.8141 7.0605 -0.2623 13 6 7.7247 6.0026 -0.0637 14 6 7.2610 4.7033 0.0491 15 6 9.0653 6.6245 -0.0251 16 8 10.1156 6.0350 0.1310 17 7 8.9280 7.9519 -0.1926 18 6 7.6343 8.2905 -0.3382 19 8 7.2104 9.4164 -0.5036 20 7 1.6523 2.0976 -1.2517 21 6 0.4155 2.6736 -1.3686 22 1 -0.2741 2.6454 -0.5379 23 6 0.0485 3.2948 -2.5545 24 7 0.8889 3.3297 -3.5667 25 14 -1.6390 4.0799 -2.7141 26 1 -2.3886 3.9048 -1.4442 27 1 -1.4857 5.5286 -3.0022 28 1 -2.3841 3.4310 -3.8228 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3635 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8898 34 1 3.9953 0.8312 -0.6660 35 1 3.8499 1.0377 1.0960 36 1 3.4409 3.5485 -0.1307 37 1 3.9340 5.2990 -0.2944 38 1 4.7581 7.6106 -0.5002 39 1 7.9552 3.8901 0.2017 40 1 9.6649 8.5826 -0.2049 41 1 2.2717 2.1233 -1.9976 42 1 0.6323 3.7634 -4.3955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267826763.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:38 Heat of formation + Delta-G solvation = -48.884867 kcal Electronic energy + Delta-G solvation = -27325.448648 eV Core-core repulsion = 23271.498064 eV Total energy + Delta-G solvation = -4053.950584 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.55606 -40.04272 -38.98984 -38.14116 -36.79647 -35.97943 -34.00703 -32.52905 -31.68792 -31.47616 -29.83757 -28.11693 -25.71689 -24.98584 -23.69002 -23.06664 -22.35951 -20.79131 -20.51013 -20.01546 -18.32725 -18.19782 -17.53971 -17.16221 -16.76970 -16.13146 -15.82901 -15.53535 -15.42479 -14.81335 -14.75598 -14.36967 -14.34469 -14.13002 -14.01258 -13.33159 -13.32630 -13.14562 -13.00553 -12.64533 -12.26429 -12.10016 -11.53991 -11.06309 -10.98768 -10.97534 -10.83327 -10.80159 -10.79084 -10.52789 -10.27335 -10.10546 -9.93874 -9.63263 -9.61496 -9.57154 -9.06240 -8.83931 -7.14337 -5.91284 -3.21191 -0.45379 0.54471 1.43660 2.18709 2.56395 2.74751 3.04942 3.32664 3.39641 3.41513 3.42152 3.50619 3.88781 4.21708 4.45392 4.53211 4.68357 4.81974 4.93451 5.28883 5.34161 5.41269 5.45864 5.47507 5.54023 5.68780 5.79170 5.81542 5.87037 5.87980 6.00706 6.05744 6.17456 6.32990 6.41262 6.48006 6.52619 6.70923 6.77141 6.92872 7.17079 7.34947 7.58349 7.65105 8.24516 8.26537 9.38181 9.91857 10.27821 11.30264 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013102 B = 0.003017 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.541177 B = 9279.569962 C =11038.531230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.162 3.838 4 H 0.055 0.945 5 C 0.113 3.887 6 N -0.701 5.701 7 C 0.551 3.449 8 O -0.540 6.540 9 C -0.102 4.102 10 C -0.054 4.054 11 C -0.045 4.045 12 C -0.126 4.126 13 C -0.155 4.155 14 C 0.012 3.988 15 C 0.582 3.418 16 O -0.461 6.461 17 N -0.680 5.680 18 C 0.579 3.421 19 O -0.460 6.460 20 N -0.723 5.723 21 C -0.240 4.240 22 H 0.074 0.926 23 C -0.009 4.009 24 N -0.928 5.928 25 Si 0.901 3.099 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.411 0.589 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.430 0.570 41 H 0.385 0.615 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.691 5.505 8.593 14.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.052 3.948 4 H 0.073 0.927 5 C -0.011 4.011 6 N -0.352 5.352 7 C 0.337 3.663 8 O -0.418 6.418 9 C -0.105 4.105 10 C -0.073 4.073 11 C -0.064 4.064 12 C -0.130 4.130 13 C -0.159 4.159 14 C -0.008 4.008 15 C 0.370 3.630 16 O -0.332 6.332 17 N -0.347 5.347 18 C 0.367 3.633 19 O -0.331 6.331 20 N -0.365 5.365 21 C -0.371 4.371 22 H 0.092 0.908 23 C -0.205 4.205 24 N -0.576 5.576 25 Si 0.732 3.268 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.249 0.751 37 H 0.172 0.828 38 H 0.169 0.831 39 H 0.173 0.827 40 H 0.272 0.728 41 H 0.219 0.781 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.286 5.123 8.730 15.160 hybrid contribution -0.750 1.085 -0.638 1.465 sum 10.536 6.208 8.092 14.664 Atomic orbital electron populations 1.21768 0.95662 0.99713 1.03260 1.22066 0.97030 0.98267 1.00122 1.20585 0.89688 0.93006 0.91524 0.92691 1.21778 0.95849 0.81916 1.01543 1.45915 1.06559 1.11398 1.71356 1.18038 0.82983 0.87549 0.77744 1.90781 1.56035 1.45301 1.49721 1.20281 0.93614 0.94388 1.02209 1.21840 1.01100 0.91277 0.93056 1.20771 0.92936 0.97438 0.95218 1.20642 0.95069 0.93429 1.03812 1.20316 0.93475 0.94773 1.07317 1.20763 0.94597 0.94896 0.90538 1.18238 0.88831 0.81511 0.74404 1.90866 1.32147 1.66863 1.43275 1.44422 1.10804 1.10677 1.68775 1.18358 0.82081 0.88378 0.74474 1.90863 1.76091 1.23124 1.43019 1.42485 1.16858 1.65884 1.11287 1.19241 0.92001 1.27755 0.98088 0.90796 1.24726 0.98000 1.01493 0.96329 1.69660 1.35131 1.48781 1.03982 0.86218 0.84133 0.78879 0.77526 1.20529 1.21877 1.21909 0.94829 0.94091 0.89664 0.92461 0.93772 0.91366 0.91385 0.75134 0.82811 0.83079 0.82721 0.72778 0.78079 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.18 37.16 0.34 -2.09 16 2 C -0.13 -2.12 5.61 -26.73 -0.15 -2.27 16 3 C 0.16 2.69 2.59 -67.93 -0.18 2.51 16 4 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 5 C 0.11 1.69 5.23 -4.03 -0.02 1.67 16 6 N -0.70 -10.00 5.34 -61.19 -0.33 -10.32 16 7 C 0.55 7.99 7.78 -12.25 -0.10 7.90 16 8 O -0.54 -9.35 16.34 5.34 0.09 -9.26 16 9 C -0.10 -1.21 5.88 -104.86 -0.62 -1.82 16 10 C -0.05 -0.55 9.53 -39.05 -0.37 -0.92 16 11 C -0.04 -0.42 10.08 -39.37 -0.40 -0.82 16 12 C -0.13 -1.26 6.41 -104.71 -0.67 -1.93 16 13 C -0.16 -1.64 6.39 -104.86 -0.67 -2.31 16 14 C 0.01 0.13 9.63 -38.94 -0.37 -0.24 16 15 C 0.58 6.07 8.45 -12.46 -0.11 5.96 16 16 O -0.46 -5.95 18.04 5.41 0.10 -5.85 16 17 N -0.68 -5.66 5.76 -13.18 -0.08 -5.74 16 18 C 0.58 5.82 8.47 -12.36 -0.10 5.72 16 19 O -0.46 -5.70 18.04 5.42 0.10 -5.60 16 20 N -0.72 -15.02 4.51 -53.42 -0.24 -15.26 16 21 C -0.24 -5.64 7.75 -15.06 -0.12 -5.76 16 22 H 0.07 1.71 7.32 -52.49 -0.38 1.33 16 23 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 24 N -0.93 -25.20 13.06 55.49 0.72 -24.47 16 25 Si 0.90 20.38 29.55 -169.99 -5.02 15.36 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.69 5.99 -51.93 -0.31 1.38 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.41 5.70 6.15 -40.82 -0.25 5.45 16 37 H 0.15 1.46 6.36 -52.49 -0.33 1.12 16 38 H 0.15 1.16 8.06 -52.48 -0.42 0.73 16 39 H 0.16 1.78 7.65 -52.49 -0.40 1.38 16 40 H 0.43 2.44 8.96 -40.82 -0.37 2.07 16 41 H 0.39 8.84 7.80 -40.82 -0.32 8.52 16 42 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 363.96 15.07 5.48 5.48 Total: -1.00 -30.01 363.96 -7.68 -37.69 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -4.88 Total: 12.71 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -3.63 Total: 5.27 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 0.08 Total: -55.80 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: 0.28 Total: -20.71 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.01 -7.68 -37.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267826763.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.199 kcal (2) G-P(sol) polarization free energy of solvation -30.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds