Wall clock time and date at job start Tue Mar 31 2020 16:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46933 * 2 1 4 4 H 1.09003 * 109.46955 * 55.00971 * 3 2 1 5 5 C 1.53008 * 109.46698 * 175.00127 * 3 2 1 6 6 N 1.46505 * 109.46644 * 175.00443 * 5 3 2 7 7 C 1.34776 * 119.99723 * 180.02562 * 6 5 3 8 8 O 1.21534 * 119.99960 * 359.97438 * 7 6 5 9 9 C 1.48015 * 120.00125 * 180.02562 * 7 6 5 10 10 C 1.39461 * 119.92058 * 359.97438 * 9 7 6 11 11 C 1.38445 * 120.30785 * 179.97438 * 10 9 7 12 12 C 1.38593 * 119.90122 * 0.02562 * 11 10 9 13 13 C 1.40987 * 120.05775 * 359.97428 * 12 11 10 14 14 C 1.38422 * 119.96235 * 0.02562 * 13 12 11 15 15 C 1.47836 * 105.89009 * 180.02562 * 13 12 11 16 16 O 1.21447 * 125.69057 * 179.97438 * 15 13 12 17 17 N 1.34501 * 108.61949 * 359.93010 * 15 13 12 18 18 C 1.34513 * 111.10790 * 0.08941 * 17 15 13 19 19 O 1.21433 * 125.72255 * 179.89483 * 18 17 15 20 20 N 1.46496 * 109.47456 * 295.00420 * 3 2 1 21 21 C 1.36935 * 120.00045 * 85.00073 * 20 3 2 22 22 H 1.07997 * 120.00246 * 0.02562 * 21 20 3 23 23 C 1.38815 * 119.99808 * 179.97438 * 21 20 3 24 24 N 1.31610 * 120.00270 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99551 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47394 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47047 * 120.00414 * 25 23 21 28 28 H 1.48502 * 109.47348 * 239.99980 * 25 23 21 29 29 H 1.08997 * 109.47110 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46830 * 299.99762 * 1 2 3 31 31 H 1.08998 * 109.47844 * 59.99227 * 1 2 3 32 32 H 1.09000 * 109.47071 * 240.00713 * 2 1 3 33 33 H 1.08993 * 109.47430 * 120.00646 * 2 1 3 34 34 H 1.09000 * 109.46776 * 55.00632 * 5 3 2 35 35 H 1.08998 * 109.47459 * 295.00037 * 5 3 2 36 36 H 0.97000 * 120.00344 * 0.02562 * 6 5 3 37 37 H 1.08001 * 119.85244 * 0.02562 * 10 9 7 38 38 H 1.08004 * 120.05237 * 179.75110 * 11 10 9 39 39 H 1.08001 * 120.19504 * 180.02562 * 14 13 12 40 40 H 0.97001 * 124.44454 * 179.97438 * 17 15 13 41 41 H 0.96995 * 119.99890 * 264.99888 * 20 3 2 42 42 H 0.97002 * 120.00256 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1257 6 7 4.0630 2.8169 0.0060 7 6 5.3857 3.0630 0.0859 8 8 6.1651 2.1464 0.2576 9 6 5.8890 4.4497 -0.0345 10 6 4.9932 5.5003 -0.2310 11 6 5.4552 6.8005 -0.3441 12 6 6.8141 7.0605 -0.2623 13 6 7.7247 6.0026 -0.0637 14 6 7.2610 4.7033 0.0491 15 6 9.0653 6.6245 -0.0251 16 8 10.1156 6.0350 0.1310 17 7 8.9280 7.9519 -0.1926 18 6 7.6343 8.2905 -0.3382 19 8 7.2104 9.4164 -0.5036 20 7 1.6523 2.0976 -1.2517 21 6 0.4155 2.6736 -1.3686 22 1 -0.2741 2.6454 -0.5379 23 6 0.0485 3.2948 -2.5545 24 7 0.8889 3.3297 -3.5667 25 14 -1.6390 4.0799 -2.7141 26 1 -2.3886 3.9048 -1.4442 27 1 -1.4857 5.5286 -3.0022 28 1 -2.3841 3.4310 -3.8228 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3635 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8898 34 1 3.9953 0.8312 -0.6660 35 1 3.8499 1.0377 1.0960 36 1 3.4409 3.5485 -0.1307 37 1 3.9340 5.2990 -0.2944 38 1 4.7581 7.6106 -0.5002 39 1 7.9552 3.8901 0.2017 40 1 9.6649 8.5826 -0.2049 41 1 2.2717 2.1233 -1.9976 42 1 0.6323 3.7634 -4.3955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267826763.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:37 Heat of formation + Delta-G solvation = -70.501294 kcal Electronic energy + Delta-G solvation = -27326.386006 eV Core-core repulsion = 23271.498064 eV Total energy + Delta-G solvation = -4054.887943 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.40332 -41.14378 -39.89835 -39.13786 -38.18975 -36.87039 -35.35515 -34.16004 -32.62053 -32.33355 -31.43895 -29.48420 -26.69398 -26.02839 -25.22041 -24.11512 -23.51793 -21.73825 -21.59500 -21.28221 -19.43625 -19.16627 -18.86120 -18.33020 -17.61488 -17.22782 -16.98825 -16.73485 -16.40935 -16.19085 -15.73089 -15.66273 -15.35218 -15.29345 -15.16469 -14.80538 -14.52794 -14.22562 -14.21365 -13.90972 -13.57270 -13.03392 -12.93531 -12.77551 -12.73758 -12.32140 -12.04109 -11.86872 -11.82044 -11.71389 -11.63505 -11.58854 -11.29554 -11.15548 -10.84768 -10.52663 -10.42418 -10.02516 -8.92992 -7.83266 -5.09849 -1.32707 -0.32063 0.55876 1.40424 1.52677 1.57118 1.63051 1.68777 1.78424 2.02408 2.47947 2.54930 2.63952 3.04249 3.38805 3.49723 3.55775 3.80656 3.92483 3.96376 3.98819 4.11112 4.42303 4.52709 4.59280 4.61464 4.66198 4.74597 4.81268 4.88959 4.92571 4.99806 5.13955 5.16525 5.18485 5.25179 5.33765 5.45737 5.60494 5.67891 5.76407 5.92720 6.37119 6.49411 6.58250 7.10345 7.46022 8.17104 8.42007 9.39386 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013102 B = 0.003017 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.541177 B = 9279.569962 C =11038.531230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.164 3.836 4 H 0.064 0.936 5 C 0.120 3.880 6 N -0.699 5.699 7 C 0.553 3.447 8 O -0.572 6.572 9 C -0.112 4.112 10 C -0.044 4.044 11 C -0.037 4.037 12 C -0.123 4.123 13 C -0.158 4.158 14 C 0.009 3.991 15 C 0.590 3.410 16 O -0.486 6.486 17 N -0.663 5.663 18 C 0.589 3.411 19 O -0.480 6.480 20 N -0.728 5.728 21 C -0.213 4.213 22 H 0.081 0.919 23 C -0.067 4.067 24 N -0.965 5.965 25 Si 0.952 3.048 26 H -0.267 1.267 27 H -0.298 1.298 28 H -0.307 1.307 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.413 0.587 37 H 0.163 0.837 38 H 0.174 0.826 39 H 0.149 0.851 40 H 0.444 0.556 41 H 0.373 0.627 42 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.324 6.056 10.106 15.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C 0.056 3.944 4 H 0.082 0.918 5 C -0.004 4.004 6 N -0.350 5.350 7 C 0.340 3.660 8 O -0.453 6.453 9 C -0.115 4.115 10 C -0.063 4.063 11 C -0.056 4.056 12 C -0.127 4.127 13 C -0.162 4.162 14 C -0.010 4.010 15 C 0.379 3.621 16 O -0.359 6.359 17 N -0.331 5.331 18 C 0.377 3.623 19 O -0.352 6.352 20 N -0.368 5.368 21 C -0.344 4.344 22 H 0.099 0.901 23 C -0.260 4.260 24 N -0.616 5.616 25 Si 0.784 3.216 26 H -0.191 1.191 27 H -0.225 1.225 28 H -0.236 1.236 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.252 0.748 37 H 0.180 0.820 38 H 0.191 0.809 39 H 0.167 0.833 40 H 0.289 0.711 41 H 0.206 0.794 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.912 5.678 10.300 16.044 hybrid contribution -0.622 0.855 -1.019 1.468 sum 10.290 6.533 9.281 15.320 Atomic orbital electron populations 1.21703 0.96071 1.00498 1.01845 1.22001 0.96551 0.97539 1.01072 1.20728 0.90782 0.93245 0.89684 0.91839 1.21668 0.94452 0.82282 1.01993 1.45876 1.06683 1.11218 1.71178 1.18345 0.82611 0.88288 0.76779 1.90761 1.56682 1.46561 1.51318 1.20069 0.94045 0.93395 1.03986 1.21920 1.01196 0.91139 0.92052 1.20995 0.93018 0.97587 0.93962 1.20741 0.95372 0.93167 1.03383 1.20281 0.93770 0.94614 1.07544 1.20703 0.94407 0.95165 0.90756 1.18172 0.88323 0.81906 0.73701 1.90862 1.32948 1.67431 1.44617 1.44230 1.10866 1.10194 1.67780 1.18257 0.82324 0.87886 0.73818 1.90867 1.76413 1.23821 1.44074 1.42601 1.15821 1.66024 1.12401 1.19506 0.92523 1.24987 0.97428 0.90142 1.25268 1.00447 1.03542 0.96709 1.69788 1.36572 1.50985 1.04280 0.85378 0.81435 0.77529 0.77242 1.19131 1.22543 1.23561 0.93122 0.93105 0.93237 0.93665 0.90645 0.92677 0.89630 0.74810 0.81981 0.80855 0.83316 0.71146 0.79450 0.94505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 9.18 71.98 0.66 -3.80 16 2 C -0.13 -3.85 5.61 30.59 0.17 -3.68 16 3 C 0.16 5.14 2.59 45.00 0.12 5.26 16 4 H 0.06 1.93 8.08 -2.39 -0.02 1.91 16 5 C 0.12 3.43 5.23 86.38 0.45 3.88 16 6 N -0.70 -19.21 5.34 -465.79 -2.49 -21.70 16 7 C 0.55 15.73 7.78 86.84 0.68 16.41 16 8 O -0.57 -19.79 16.34 -3.82 -0.06 -19.85 16 9 C -0.11 -2.56 5.88 -20.02 -0.12 -2.68 16 10 C -0.04 -0.83 9.53 22.61 0.22 -0.61 16 11 C -0.04 -0.61 10.08 22.40 0.23 -0.39 16 12 C -0.12 -2.24 6.41 -19.92 -0.13 -2.37 16 13 C -0.16 -3.19 6.39 -20.02 -0.13 -3.31 16 14 C 0.01 0.21 9.63 22.68 0.22 0.43 16 15 C 0.59 11.68 8.45 86.83 0.73 12.41 16 16 O -0.49 -12.26 18.04 -3.55 -0.06 -12.32 16 17 N -0.66 -9.99 5.76 -432.57 -2.49 -12.48 16 18 C 0.59 10.75 8.47 86.89 0.74 11.48 16 19 O -0.48 -10.98 18.04 -3.50 -0.06 -11.05 16 20 N -0.73 -29.67 4.51 -322.93 -1.46 -31.13 16 21 C -0.21 -9.78 7.75 84.03 0.65 -9.13 16 22 H 0.08 3.58 7.32 -2.91 -0.02 3.55 16 23 C -0.07 -3.39 5.50 84.86 0.47 -2.92 16 24 N -0.96 -53.09 13.06 21.65 0.28 -52.80 16 25 Si 0.95 41.90 29.55 68.60 2.03 43.93 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.30 -13.26 7.11 99.48 0.71 -12.55 16 28 H -0.31 -14.17 7.11 99.48 0.71 -13.46 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.89 5.99 -2.39 -0.01 1.88 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.41 10.95 6.15 -92.71 -0.57 10.38 16 37 H 0.16 2.77 6.36 -2.91 -0.02 2.75 16 38 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 39 H 0.15 3.47 7.65 -2.91 -0.02 3.45 16 40 H 0.44 4.27 8.96 -92.71 -0.83 3.44 16 41 H 0.37 17.15 7.80 -92.71 -0.72 16.42 16 42 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 Total: -1.00 -63.87 363.96 -0.37 -64.25 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: -1.01 Total: 32.19 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: 4.95 Total: 20.96 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -6.15 Total: -118.11 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -0.19 Total: -43.22 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -63.87 -0.37 -64.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267826763.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.256 kcal (2) G-P(sol) polarization free energy of solvation -63.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds