Wall clock time and date at job start Tue Mar 31 2020 16:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47413 * 2 1 4 4 H 1.09000 * 109.47129 * 304.99820 * 3 2 1 5 5 C 1.53003 * 109.47065 * 184.99859 * 3 2 1 6 6 N 1.46502 * 109.46813 * 185.00158 * 5 3 2 7 7 C 1.34775 * 120.00081 * 180.02562 * 6 5 3 8 8 O 1.21538 * 119.99805 * 359.97438 * 7 6 5 9 9 C 1.48013 * 120.00445 * 179.97438 * 7 6 5 10 10 C 1.39470 * 119.92129 * 0.02562 * 9 7 6 11 11 C 1.38445 * 120.30462 * 179.97438 * 10 9 7 12 12 C 1.38586 * 119.90085 * 0.02562 * 11 10 9 13 13 C 1.40993 * 120.06769 * 359.97438 * 12 11 10 14 14 C 1.38428 * 119.95244 * 0.03661 * 13 12 11 15 15 C 1.47831 * 105.88936 * 180.02562 * 13 12 11 16 16 O 1.21441 * 125.68820 * 180.02562 * 15 13 12 17 17 N 1.34505 * 108.62133 * 359.97438 * 15 13 12 18 18 C 1.34508 * 111.10903 * 0.02562 * 17 15 13 19 19 O 1.21425 * 125.72607 * 179.97438 * 18 17 15 20 20 N 1.46506 * 109.47295 * 64.99619 * 3 2 1 21 21 C 1.36938 * 119.99878 * 275.00384 * 20 3 2 22 22 H 1.07998 * 120.00003 * 359.97438 * 21 20 3 23 23 C 1.38814 * 119.99757 * 180.02562 * 21 20 3 24 24 N 1.31616 * 120.00019 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99857 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46998 * 59.99772 * 25 23 21 27 27 H 1.48497 * 109.47068 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47138 * 299.99915 * 25 23 21 29 29 H 1.09002 * 109.47161 * 300.00390 * 1 2 3 30 30 H 1.08999 * 109.46844 * 60.00385 * 1 2 3 31 31 H 1.08997 * 109.47145 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47347 * 239.99280 * 2 1 3 33 33 H 1.08999 * 109.46844 * 119.99615 * 2 1 3 34 34 H 1.08998 * 109.47137 * 64.99950 * 5 3 2 35 35 H 1.08999 * 109.46864 * 304.99341 * 5 3 2 36 36 H 0.96996 * 120.00054 * 359.97438 * 6 5 3 37 37 H 1.08001 * 119.84186 * 0.27385 * 10 9 7 38 38 H 1.07998 * 120.04460 * 180.02562 * 11 10 9 39 39 H 1.07994 * 120.18961 * 179.97438 * 14 13 12 40 40 H 0.97003 * 124.44250 * 180.02562 * 17 15 13 41 41 H 0.96997 * 119.99794 * 95.00321 * 20 3 2 42 42 H 0.96999 * 119.99818 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 4.0631 2.8167 -0.0059 7 6 5.3857 3.0629 -0.0867 8 8 6.1651 2.1463 -0.2586 9 6 5.8891 4.4496 0.0338 10 6 4.9934 5.5002 0.2315 11 6 5.4556 6.8002 0.3458 12 6 6.8144 7.0601 0.2630 13 6 7.7250 6.0024 0.0632 14 6 7.2610 4.7032 -0.0511 15 6 9.0656 6.6243 0.0250 16 8 10.1158 6.0349 -0.1318 17 7 8.9281 7.9518 0.1917 18 6 7.6346 8.2902 0.3390 19 8 7.2108 9.4157 0.5063 20 7 1.6524 2.0975 1.2518 21 6 0.4156 2.6735 1.3687 22 1 -0.2739 2.6453 0.5380 23 6 0.0486 3.2947 2.5546 24 7 0.8891 3.3296 3.5668 25 14 -1.6383 4.0811 2.7139 26 1 -2.6867 3.0493 2.5098 27 1 -1.7831 4.6720 4.0685 28 1 -1.7865 5.1465 1.6900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8499 1.0375 -1.0960 35 1 3.9954 0.8310 0.6660 36 1 3.4411 3.5482 0.1309 37 1 3.9347 5.2980 0.3005 38 1 4.7583 7.6105 0.4992 39 1 7.9551 3.8902 -0.2046 40 1 9.6651 8.5824 0.2041 41 1 2.2719 2.1232 1.9977 42 1 0.6325 3.7633 4.3956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267826767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:42 Heat of formation + Delta-G solvation = -48.703387 kcal Electronic energy + Delta-G solvation = -27325.459055 eV Core-core repulsion = 23271.516341 eV Total energy + Delta-G solvation = -4053.942714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.55588 -40.04126 -38.99135 -38.14011 -36.79334 -35.97968 -34.00457 -32.52538 -31.68679 -31.47579 -29.83395 -28.11442 -25.71575 -24.98483 -23.68512 -23.06507 -22.35740 -20.79074 -20.50846 -20.01274 -18.32690 -18.19672 -17.53873 -17.15852 -16.76987 -16.13044 -15.82805 -15.53301 -15.42274 -14.81148 -14.75475 -14.37033 -14.34449 -14.13590 -14.01147 -13.32743 -13.32104 -13.14383 -12.99799 -12.64654 -12.26016 -12.10002 -11.53863 -11.05072 -10.98735 -10.95149 -10.83231 -10.80120 -10.79074 -10.53407 -10.28296 -10.14256 -9.93926 -9.62344 -9.61360 -9.57113 -9.04945 -8.83759 -7.14161 -5.90663 -3.20697 -0.45326 0.54532 1.43716 2.18746 2.56459 2.74819 3.05027 3.33453 3.39382 3.41082 3.41768 3.50674 3.88838 4.21745 4.45755 4.53311 4.68493 4.82038 4.93549 5.29105 5.34378 5.41327 5.46090 5.47573 5.54085 5.68848 5.79325 5.81727 5.87215 5.88260 6.00775 6.05891 6.17525 6.33275 6.41426 6.48221 6.52888 6.71116 6.77190 6.93102 7.17534 7.34990 7.57588 7.65264 8.24830 8.27005 9.38600 9.92221 10.28266 11.30734 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013101 B = 0.003017 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.780032 B = 9278.723370 C =11038.399654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.162 3.838 4 H 0.055 0.945 5 C 0.113 3.887 6 N -0.701 5.701 7 C 0.551 3.449 8 O -0.540 6.540 9 C -0.101 4.101 10 C -0.054 4.054 11 C -0.045 4.045 12 C -0.126 4.126 13 C -0.155 4.155 14 C 0.012 3.988 15 C 0.582 3.418 16 O -0.461 6.461 17 N -0.680 5.680 18 C 0.579 3.421 19 O -0.460 6.460 20 N -0.722 5.722 21 C -0.242 4.242 22 H 0.073 0.927 23 C -0.008 4.008 24 N -0.928 5.928 25 Si 0.902 3.098 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.286 1.286 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.411 0.589 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.430 0.570 41 H 0.385 0.615 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.688 5.533 -8.525 14.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.052 3.948 4 H 0.073 0.927 5 C -0.011 4.011 6 N -0.352 5.352 7 C 0.337 3.663 8 O -0.418 6.418 9 C -0.105 4.105 10 C -0.073 4.073 11 C -0.064 4.064 12 C -0.130 4.130 13 C -0.159 4.159 14 C -0.008 4.008 15 C 0.370 3.630 16 O -0.331 6.331 17 N -0.347 5.347 18 C 0.367 3.633 19 O -0.331 6.331 20 N -0.365 5.365 21 C -0.373 4.373 22 H 0.091 0.909 23 C -0.205 4.205 24 N -0.576 5.576 25 Si 0.733 3.267 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.212 1.212 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.249 0.751 37 H 0.172 0.828 38 H 0.169 0.831 39 H 0.173 0.827 40 H 0.272 0.728 41 H 0.219 0.781 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.287 5.157 -8.645 15.124 hybrid contribution -0.761 1.080 0.611 1.456 sum 10.526 6.236 -8.033 14.636 Atomic orbital electron populations 1.21770 0.95660 0.99715 1.03260 1.22066 0.97030 0.98272 1.00118 1.20583 0.89689 0.93004 0.91528 0.92698 1.21776 0.95849 0.81917 1.01539 1.45914 1.06568 1.11400 1.71341 1.18039 0.82983 0.87551 0.77745 1.90782 1.56033 1.45302 1.49730 1.20283 0.93611 0.94381 1.02215 1.21844 1.01102 0.91282 0.93052 1.20767 0.92933 0.97442 0.95216 1.20644 0.95074 0.93430 1.03805 1.20318 0.93475 0.94778 1.07316 1.20763 0.94594 0.94893 0.90540 1.18235 0.88829 0.81510 0.74405 1.90864 1.32155 1.66870 1.43259 1.44423 1.10812 1.10673 1.68775 1.18356 0.82081 0.88375 0.74478 1.90860 1.76084 1.23148 1.43004 1.42472 1.16836 1.65900 1.11281 1.19153 0.92040 1.27978 0.98083 0.90911 1.24724 0.97992 1.01449 0.96314 1.69642 1.35247 1.48707 1.03992 0.86356 0.84267 0.79235 0.76814 1.21267 1.21763 1.21239 0.89646 0.94100 0.94837 0.93776 0.92464 0.91388 0.91369 0.75131 0.82806 0.83082 0.82724 0.72780 0.78073 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.18 37.16 0.34 -2.10 16 2 C -0.13 -2.12 5.61 -26.73 -0.15 -2.27 16 3 C 0.16 2.69 2.59 -67.93 -0.18 2.51 16 4 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 5 C 0.11 1.70 5.23 -4.04 -0.02 1.68 16 6 N -0.70 -10.01 5.34 -61.19 -0.33 -10.34 16 7 C 0.55 8.00 7.78 -12.25 -0.10 7.90 16 8 O -0.54 -9.36 16.34 5.33 0.09 -9.27 16 9 C -0.10 -1.21 5.88 -104.86 -0.62 -1.82 16 10 C -0.05 -0.55 9.54 -39.05 -0.37 -0.92 16 11 C -0.04 -0.42 10.08 -39.38 -0.40 -0.82 16 12 C -0.13 -1.26 6.41 -104.70 -0.67 -1.93 16 13 C -0.16 -1.64 6.39 -104.86 -0.67 -2.31 16 14 C 0.01 0.13 9.63 -38.94 -0.37 -0.24 16 15 C 0.58 6.07 8.45 -12.46 -0.11 5.97 16 16 O -0.46 -5.95 18.04 5.42 0.10 -5.85 16 17 N -0.68 -5.66 5.76 -13.19 -0.08 -5.74 16 18 C 0.58 5.82 8.47 -12.36 -0.10 5.72 16 19 O -0.46 -5.70 18.04 5.43 0.10 -5.60 16 20 N -0.72 -15.03 4.51 -53.42 -0.24 -15.27 16 21 C -0.24 -5.69 7.75 -15.06 -0.12 -5.80 16 22 H 0.07 1.68 7.32 -52.49 -0.38 1.29 16 23 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 24 N -0.93 -25.20 13.06 55.49 0.72 -24.48 16 25 Si 0.90 20.39 29.55 -169.99 -5.02 15.36 16 26 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 29 H 0.08 1.70 5.99 -51.93 -0.31 1.39 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.41 5.71 6.15 -40.82 -0.25 5.46 16 37 H 0.15 1.46 6.36 -52.49 -0.33 1.13 16 38 H 0.15 1.16 8.06 -52.49 -0.42 0.73 16 39 H 0.16 1.78 7.65 -52.49 -0.40 1.38 16 40 H 0.43 2.44 8.96 -40.82 -0.37 2.07 16 41 H 0.39 8.85 7.80 -40.82 -0.32 8.53 16 42 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 LS Contribution 363.96 15.07 5.48 5.48 Total: -1.00 -29.94 363.96 -7.68 -37.62 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -4.88 Total: 12.84 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -3.63 Total: 5.24 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.08 Total: -55.83 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: 0.28 Total: -20.72 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.94 -7.68 -37.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267826767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.084 kcal (2) G-P(sol) polarization free energy of solvation -29.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds