Wall clock time and date at job start Tue Mar 31 2020 16:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47413 * 2 1 4 4 H 1.09000 * 109.47129 * 304.99820 * 3 2 1 5 5 C 1.53003 * 109.47065 * 184.99859 * 3 2 1 6 6 N 1.46502 * 109.46813 * 185.00158 * 5 3 2 7 7 C 1.34775 * 120.00081 * 180.02562 * 6 5 3 8 8 O 1.21538 * 119.99805 * 359.97438 * 7 6 5 9 9 C 1.48013 * 120.00445 * 179.97438 * 7 6 5 10 10 C 1.39470 * 119.92129 * 0.02562 * 9 7 6 11 11 C 1.38445 * 120.30462 * 179.97438 * 10 9 7 12 12 C 1.38586 * 119.90085 * 0.02562 * 11 10 9 13 13 C 1.40993 * 120.06769 * 359.97438 * 12 11 10 14 14 C 1.38428 * 119.95244 * 0.03661 * 13 12 11 15 15 C 1.47831 * 105.88936 * 180.02562 * 13 12 11 16 16 O 1.21441 * 125.68820 * 180.02562 * 15 13 12 17 17 N 1.34505 * 108.62133 * 359.97438 * 15 13 12 18 18 C 1.34508 * 111.10903 * 0.02562 * 17 15 13 19 19 O 1.21425 * 125.72607 * 179.97438 * 18 17 15 20 20 N 1.46506 * 109.47295 * 64.99619 * 3 2 1 21 21 C 1.36938 * 119.99878 * 275.00384 * 20 3 2 22 22 H 1.07998 * 120.00003 * 359.97438 * 21 20 3 23 23 C 1.38814 * 119.99757 * 180.02562 * 21 20 3 24 24 N 1.31616 * 120.00019 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99857 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46998 * 59.99772 * 25 23 21 27 27 H 1.48497 * 109.47068 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47138 * 299.99915 * 25 23 21 29 29 H 1.09002 * 109.47161 * 300.00390 * 1 2 3 30 30 H 1.08999 * 109.46844 * 60.00385 * 1 2 3 31 31 H 1.08997 * 109.47145 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47347 * 239.99280 * 2 1 3 33 33 H 1.08999 * 109.46844 * 119.99615 * 2 1 3 34 34 H 1.08998 * 109.47137 * 64.99950 * 5 3 2 35 35 H 1.08999 * 109.46864 * 304.99341 * 5 3 2 36 36 H 0.96996 * 120.00054 * 359.97438 * 6 5 3 37 37 H 1.08001 * 119.84186 * 0.27385 * 10 9 7 38 38 H 1.07998 * 120.04460 * 180.02562 * 11 10 9 39 39 H 1.07994 * 120.18961 * 179.97438 * 14 13 12 40 40 H 0.97003 * 124.44250 * 180.02562 * 17 15 13 41 41 H 0.96997 * 119.99794 * 95.00321 * 20 3 2 42 42 H 0.96999 * 119.99818 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 4.0631 2.8167 -0.0059 7 6 5.3857 3.0629 -0.0867 8 8 6.1651 2.1463 -0.2586 9 6 5.8891 4.4496 0.0338 10 6 4.9934 5.5002 0.2315 11 6 5.4556 6.8002 0.3458 12 6 6.8144 7.0601 0.2630 13 6 7.7250 6.0024 0.0632 14 6 7.2610 4.7032 -0.0511 15 6 9.0656 6.6243 0.0250 16 8 10.1158 6.0349 -0.1318 17 7 8.9281 7.9518 0.1917 18 6 7.6346 8.2902 0.3390 19 8 7.2108 9.4157 0.5063 20 7 1.6524 2.0975 1.2518 21 6 0.4156 2.6735 1.3687 22 1 -0.2739 2.6453 0.5380 23 6 0.0486 3.2947 2.5546 24 7 0.8891 3.3296 3.5668 25 14 -1.6383 4.0811 2.7139 26 1 -2.6867 3.0493 2.5098 27 1 -1.7831 4.6720 4.0685 28 1 -1.7865 5.1465 1.6900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8499 1.0375 -1.0960 35 1 3.9954 0.8310 0.6660 36 1 3.4411 3.5482 0.1309 37 1 3.9347 5.2980 0.3005 38 1 4.7583 7.6105 0.4992 39 1 7.9551 3.8902 -0.2046 40 1 9.6651 8.5824 0.2041 41 1 2.2719 2.1232 1.9977 42 1 0.6325 3.7633 4.3956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267826767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:41 Heat of formation + Delta-G solvation = -70.257805 kcal Electronic energy + Delta-G solvation = -27326.393725 eV Core-core repulsion = 23271.516341 eV Total energy + Delta-G solvation = -4054.877384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.40307 -41.14311 -39.89965 -39.13715 -38.18736 -36.87052 -35.35312 -34.15796 -32.61999 -32.33347 -31.43659 -29.48309 -26.69262 -26.02673 -25.21534 -24.11489 -23.51814 -21.73732 -21.59421 -21.28144 -19.43385 -19.16575 -18.85821 -18.32960 -17.61487 -17.22751 -16.98402 -16.73314 -16.40935 -16.19346 -15.73092 -15.66915 -15.34275 -15.29380 -15.16432 -14.79874 -14.52718 -14.22508 -14.21488 -13.90937 -13.56941 -13.03396 -12.91956 -12.74798 -12.70500 -12.33981 -12.10640 -11.87629 -11.82958 -11.71376 -11.63469 -11.59103 -11.29048 -11.15300 -10.82318 -10.52601 -10.42386 -10.02491 -8.92698 -7.82657 -5.09385 -1.32660 -0.32024 0.55921 1.40471 1.54897 1.57261 1.61436 1.68813 1.78488 2.02446 2.47991 2.54948 2.64442 3.04310 3.38841 3.49827 3.55844 3.80704 3.92591 3.96425 3.98941 4.11146 4.42330 4.52678 4.59304 4.61394 4.66247 4.74613 4.81224 4.89027 4.92549 4.99855 5.13904 5.16451 5.18526 5.25000 5.33799 5.45716 5.60453 5.67467 5.76253 5.92783 6.37336 6.49436 6.58311 7.10349 7.46322 8.17493 8.42519 9.39532 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013101 B = 0.003017 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.780032 B = 9278.723370 C =11038.399654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.164 3.836 4 H 0.063 0.937 5 C 0.120 3.880 6 N -0.699 5.699 7 C 0.553 3.447 8 O -0.572 6.572 9 C -0.112 4.112 10 C -0.044 4.044 11 C -0.037 4.037 12 C -0.123 4.123 13 C -0.158 4.158 14 C 0.009 3.991 15 C 0.591 3.409 16 O -0.486 6.486 17 N -0.663 5.663 18 C 0.589 3.411 19 O -0.480 6.480 20 N -0.728 5.728 21 C -0.216 4.216 22 H 0.080 0.920 23 C -0.066 4.066 24 N -0.965 5.965 25 Si 0.953 3.047 26 H -0.287 1.287 27 H -0.307 1.307 28 H -0.276 1.276 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.413 0.587 37 H 0.163 0.837 38 H 0.174 0.826 39 H 0.149 0.851 40 H 0.444 0.556 41 H 0.373 0.627 42 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.318 6.119 -10.010 15.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C 0.056 3.944 4 H 0.081 0.919 5 C -0.004 4.004 6 N -0.349 5.349 7 C 0.340 3.660 8 O -0.453 6.453 9 C -0.115 4.115 10 C -0.063 4.063 11 C -0.056 4.056 12 C -0.127 4.127 13 C -0.162 4.162 14 C -0.010 4.010 15 C 0.379 3.621 16 O -0.359 6.359 17 N -0.331 5.331 18 C 0.377 3.623 19 O -0.352 6.352 20 N -0.368 5.368 21 C -0.348 4.348 22 H 0.098 0.902 23 C -0.259 4.259 24 N -0.616 5.616 25 Si 0.785 3.215 26 H -0.214 1.214 27 H -0.234 1.234 28 H -0.202 1.202 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.252 0.748 37 H 0.180 0.820 38 H 0.192 0.808 39 H 0.167 0.833 40 H 0.289 0.711 41 H 0.205 0.795 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.911 5.748 -10.185 15.994 hybrid contribution -0.635 0.839 0.984 1.440 sum 10.276 6.587 -9.201 15.286 Atomic orbital electron populations 1.21702 0.96089 1.00482 1.01837 1.22000 0.96531 0.97557 1.01066 1.20725 0.90781 0.93232 0.89694 0.91855 1.21665 0.94452 0.82285 1.01989 1.45874 1.06692 1.11217 1.71166 1.18346 0.82609 0.88292 0.76779 1.90762 1.56680 1.46562 1.51325 1.20070 0.94044 0.93387 1.03996 1.21922 1.01186 0.91147 0.92053 1.20992 0.93019 0.97589 0.93956 1.20743 0.95376 0.93170 1.03372 1.20283 0.93772 0.94618 1.07539 1.20703 0.94402 0.95164 0.90759 1.18169 0.88319 0.81906 0.73703 1.90861 1.32954 1.67438 1.44602 1.44230 1.10873 1.10188 1.67781 1.18254 0.82322 0.87882 0.73823 1.90865 1.76407 1.23843 1.44054 1.42586 1.15801 1.66057 1.12389 1.19433 0.92586 1.25281 0.97473 0.90205 1.25272 1.00464 1.03474 0.96671 1.69779 1.36668 1.50888 1.04246 0.85516 0.81472 0.78566 0.75982 1.21414 1.23368 1.20230 0.93277 0.93077 0.93148 0.90643 0.93674 0.89634 0.92677 0.74813 0.81992 0.80847 0.83320 0.71146 0.79451 0.94494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 9.18 71.98 0.66 -3.82 16 2 C -0.13 -3.86 5.61 30.59 0.17 -3.69 16 3 C 0.16 5.16 2.59 44.99 0.12 5.27 16 4 H 0.06 1.93 8.08 -2.39 -0.02 1.91 16 5 C 0.12 3.44 5.23 86.38 0.45 3.89 16 6 N -0.70 -19.26 5.34 -465.80 -2.49 -21.74 16 7 C 0.55 15.75 7.78 86.84 0.68 16.43 16 8 O -0.57 -19.81 16.34 -3.84 -0.06 -19.87 16 9 C -0.11 -2.57 5.88 -20.02 -0.12 -2.68 16 10 C -0.04 -0.83 9.54 22.62 0.22 -0.61 16 11 C -0.04 -0.61 10.08 22.40 0.23 -0.39 16 12 C -0.12 -2.24 6.41 -19.92 -0.13 -2.37 16 13 C -0.16 -3.19 6.39 -20.02 -0.13 -3.31 16 14 C 0.01 0.21 9.63 22.69 0.22 0.43 16 15 C 0.59 11.68 8.45 86.82 0.73 12.41 16 16 O -0.49 -12.25 18.04 -3.53 -0.06 -12.32 16 17 N -0.66 -9.98 5.76 -432.59 -2.49 -12.47 16 18 C 0.59 10.74 8.47 86.89 0.74 11.47 16 19 O -0.48 -10.97 18.04 -3.48 -0.06 -11.03 16 20 N -0.73 -29.73 4.51 -322.93 -1.46 -31.19 16 21 C -0.22 -9.96 7.75 84.03 0.65 -9.31 16 22 H 0.08 3.54 7.32 -2.91 -0.02 3.52 16 23 C -0.07 -3.34 5.50 84.86 0.47 -2.88 16 24 N -0.96 -53.07 13.06 21.65 0.28 -52.79 16 25 Si 0.95 41.86 29.55 68.60 2.03 43.88 16 26 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 27 H -0.31 -14.12 7.11 99.48 0.71 -13.41 16 28 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 29 H 0.05 1.89 5.99 -2.39 -0.01 1.88 16 30 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.41 10.98 6.15 -92.71 -0.57 10.41 16 37 H 0.16 2.78 6.36 -2.91 -0.02 2.76 16 38 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 39 H 0.15 3.47 7.65 -2.91 -0.02 3.45 16 40 H 0.44 4.27 8.96 -92.71 -0.83 3.44 16 41 H 0.37 17.17 7.80 -92.71 -0.72 16.45 16 42 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 Total: -1.00 -63.74 363.96 -0.37 -64.11 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: -1.01 Total: 32.58 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: 4.95 Total: 20.83 kcal Atomic # 7 Polarization: -112.04 SS G_CDS: -6.15 Total: -118.19 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -0.19 Total: -43.22 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Total: -63.74 -0.37 -64.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267826767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.144 kcal (2) G-P(sol) polarization free energy of solvation -63.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds