Wall clock time and date at job start Tue Mar 31 2020 16:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47191 * 1 3 3 C 1.17405 * 179.97438 * 2 1 4 4 C 1.43198 * 179.97438 * 144.68856 * 3 2 1 5 5 O 1.21613 * 120.00550 * 318.25018 * 4 3 2 6 6 N 1.34786 * 119.99554 * 138.24778 * 4 3 2 7 7 C 1.46676 * 125.31265 * 179.97438 * 6 4 3 8 8 C 1.54012 * 106.91489 * 161.76616 * 7 6 4 9 9 H 1.09000 * 113.44158 * 263.66185 * 8 7 6 10 10 C 1.51707 * 108.80545 * 135.34901 * 8 7 6 11 11 C 1.47593 * 125.75577 * 86.89217 * 10 8 7 12 12 O 1.21554 * 120.00046 * 0.02942 * 11 10 8 13 13 N 1.34775 * 120.00016 * 180.02562 * 11 10 8 14 14 C 1.47074 * 136.05415 * 359.63366 * 13 11 10 15 15 C 1.53753 * 87.88656 * 152.96122 * 14 13 11 16 16 C 1.50706 * 114.26772 * 139.78956 * 15 14 13 17 17 H 1.07996 * 119.99727 * 266.47154 * 16 15 14 18 18 C 1.37869 * 120.00011 * 86.47639 * 16 15 14 19 19 N 1.31519 * 119.99832 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00034 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47244 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47059 * 119.99851 * 20 18 16 23 23 H 1.48507 * 109.46800 * 239.99667 * 20 18 16 24 24 C 1.47068 * 136.05803 * 180.02562 * 13 11 10 25 25 N 1.28969 * 108.44830 * 266.89478 * 10 8 7 26 26 O 1.41377 * 112.89856 * 0.24391 * 25 10 8 27 27 C 1.43982 * 107.64057 * 342.05336 * 26 25 10 28 28 H 1.09002 * 113.13607 * 263.34343 * 27 26 25 29 29 C 1.46604 * 125.31768 * 0.04532 * 6 4 3 30 30 H 1.09004 * 109.47053 * 257.06217 * 1 2 3 31 31 H 1.09002 * 109.47441 * 17.06221 * 1 2 3 32 32 H 1.09003 * 109.47430 * 137.06183 * 1 2 3 33 33 H 1.09002 * 109.97951 * 281.14454 * 7 6 4 34 34 H 1.09000 * 109.98073 * 42.39431 * 7 6 4 35 35 H 1.09002 * 113.46449 * 267.68956 * 14 13 11 36 36 H 1.08997 * 113.47161 * 38.13226 * 14 13 11 37 37 H 1.08994 * 114.39551 * 272.67592 * 15 14 13 38 38 H 0.97004 * 119.99547 * 180.02562 * 19 18 16 39 39 H 1.09001 * 113.46851 * 321.86002 * 24 13 11 40 40 H 1.08997 * 113.46795 * 92.24701 * 24 13 11 41 41 H 1.08997 * 109.73788 * 300.88747 * 29 6 4 42 42 H 1.08996 * 109.74335 * 61.54259 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4719 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0779 0.0017 -0.0004 5 8 4.6869 -0.7835 0.7007 6 7 4.7509 0.8731 -0.7779 7 6 6.2112 0.9760 -0.8684 8 6 6.5269 1.7396 -2.1681 9 1 6.7536 1.0863 -3.0107 10 6 7.5964 2.7760 -1.8789 11 6 9.0537 2.5452 -1.9171 12 8 9.4877 1.4457 -2.2002 13 7 9.9032 3.5537 -1.6381 14 6 9.7785 4.9729 -1.2728 15 6 11.1327 4.8484 -0.5554 16 6 12.0408 6.0375 -0.7358 17 1 12.7732 6.0421 -1.5295 18 6 11.9367 7.1194 0.1124 19 7 11.0444 7.1139 1.0787 20 14 13.0618 8.5936 -0.1116 21 1 13.9694 8.3534 -1.2621 22 1 12.2438 9.8057 -0.3704 23 1 13.8669 8.7935 1.1202 24 6 11.3628 3.7210 -1.5718 25 7 7.0166 3.8923 -1.5941 26 8 5.6061 3.8052 -1.6331 27 6 5.2624 2.6246 -2.3822 28 1 5.0374 2.8317 -3.4285 29 6 4.1375 1.8670 -1.6640 30 1 -0.3633 -0.2301 1.0016 31 1 -0.3634 0.9824 -0.3015 32 1 -0.3634 -0.7523 -0.7001 33 1 6.5998 1.5246 -0.0103 34 1 6.6532 -0.0196 -0.9048 35 1 9.8018 5.6454 -2.1303 36 1 8.9460 5.1763 -0.5994 37 1 11.0650 4.5110 0.4788 38 1 10.9709 7.8753 1.6752 39 1 11.8801 2.8578 -1.1531 40 1 11.8035 4.0629 -2.5083 41 1 3.5049 1.3662 -2.3968 42 1 3.5398 2.5644 -1.0773 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271095203.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:34 Heat of formation + Delta-G solvation = 64.214864 kcal Electronic energy + Delta-G solvation = -27426.069372 eV Core-core repulsion = 23377.023160 eV Total energy + Delta-G solvation = -4049.046212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.61417 -39.78573 -39.27217 -37.27183 -36.42757 -34.66084 -33.60964 -32.73433 -31.39169 -29.67569 -29.35356 -28.64635 -25.71855 -25.17059 -25.05851 -23.20427 -22.11014 -21.52825 -20.22623 -18.81337 -18.48654 -17.20978 -16.96139 -16.74341 -16.53311 -15.76017 -15.57789 -15.36650 -15.29153 -14.80151 -14.60503 -14.36887 -14.22137 -14.16574 -13.85089 -13.49798 -13.44989 -12.88320 -12.78103 -12.49733 -12.35931 -12.16996 -11.90805 -11.61766 -11.40088 -11.08491 -10.99836 -10.90462 -10.79712 -10.71315 -10.51783 -10.40678 -10.02047 -9.90923 -9.34818 -9.16075 -9.13476 -8.63267 -8.10929 -6.21110 -4.27803 0.96197 1.19824 1.84915 2.49326 2.54495 3.03465 3.17136 3.21437 3.22468 3.31183 3.34172 3.58981 3.85277 3.96484 4.05813 4.21372 4.31674 4.43358 4.76550 4.82838 4.89796 4.97076 4.97740 5.05216 5.08047 5.14900 5.21786 5.32271 5.45302 5.56875 5.73879 5.91437 5.99704 6.12214 6.31357 6.48494 6.53645 6.78749 6.85135 6.91406 6.95649 7.48958 7.65772 7.75758 8.10423 8.12171 8.37626 8.76497 9.39538 10.88505 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.020474 B = 0.002427 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.255404 B =11533.610815 C =11997.528020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.076 4.076 3 C -0.228 4.228 4 C 0.652 3.348 5 O -0.515 6.515 6 N -0.605 5.605 7 C 0.121 3.879 8 C -0.102 4.102 9 H 0.138 0.862 10 C 0.068 3.932 11 C 0.597 3.403 12 O -0.542 6.542 13 N -0.619 5.619 14 C 0.098 3.902 15 C 0.035 3.965 16 C -0.519 4.519 17 H 0.066 0.934 18 C 0.069 3.931 19 N -0.882 5.882 20 Si 0.897 3.103 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.103 3.897 25 N -0.219 5.219 26 O -0.183 6.183 27 C 0.033 3.967 28 H 0.128 0.872 29 C 0.104 3.896 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.265 0.735 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.451 -9.866 -7.368 23.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.079 4.079 3 C -0.231 4.231 4 C 0.442 3.558 5 O -0.391 6.391 6 N -0.340 5.340 7 C -0.002 4.002 8 C -0.123 4.123 9 H 0.156 0.844 10 C -0.128 4.128 11 C 0.383 3.617 12 O -0.419 6.419 13 N -0.352 5.352 14 C -0.024 4.024 15 C 0.016 3.984 16 C -0.557 4.557 17 H 0.084 0.916 18 C -0.135 4.135 19 N -0.518 5.518 20 Si 0.724 3.276 21 H -0.195 1.195 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.018 4.018 25 N 0.038 4.962 26 O -0.203 6.203 27 C -0.026 4.026 28 H 0.146 0.854 29 C -0.019 4.019 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.117 -9.785 -6.597 22.466 hybrid contribution 0.119 0.167 -0.435 0.481 sum -18.998 -9.618 -7.031 22.425 Atomic orbital electron populations 1.19157 0.83307 1.04170 1.04267 1.22703 0.93791 0.95944 0.95441 1.20397 0.92142 1.05116 1.05423 1.14147 0.82610 0.79799 0.79276 1.90900 1.68704 1.38896 1.40587 1.47892 1.07125 1.35347 1.43599 1.21864 0.79729 1.02583 0.96037 1.23371 0.89990 0.98199 1.00783 0.84409 1.26001 0.96600 0.91851 0.98378 1.16340 0.81934 0.84397 0.79077 1.90796 1.76838 1.23548 1.50719 1.50041 1.09914 1.12078 1.63140 1.23905 1.02748 0.76934 0.98783 1.20437 0.91259 0.92430 0.94292 1.20891 1.18942 1.00359 1.15517 0.91616 1.25045 0.95220 0.98741 0.94538 1.69967 1.33732 1.30961 1.17165 0.86461 0.80587 0.82285 0.78252 1.19526 1.20856 1.20851 1.23531 0.77905 0.99410 1.00990 1.78753 0.89537 1.19569 1.08362 1.91303 1.13550 1.43158 1.72311 1.24574 0.94374 0.85750 0.97919 0.85444 1.21941 0.95264 0.90819 0.93900 0.88992 0.88932 0.88889 0.90224 0.88155 0.90266 0.90921 0.91081 0.92557 0.91741 0.90069 0.89129 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.18 10.32 34.37 0.35 0.17 16 2 C -0.08 -0.64 14.13 -37.13 -0.52 -1.16 16 3 C -0.23 -2.57 12.75 -38.84 -0.50 -3.06 16 4 C 0.65 8.94 7.68 -14.33 -0.11 8.83 16 5 O -0.51 -8.92 17.36 5.27 0.09 -8.83 16 6 N -0.61 -7.24 3.31 -175.43 -0.58 -7.82 16 7 C 0.12 1.57 6.34 -3.42 -0.02 1.55 16 8 C -0.10 -1.20 4.10 -89.24 -0.37 -1.57 16 9 H 0.14 1.36 8.14 -51.93 -0.42 0.94 16 10 C 0.07 1.06 6.22 -79.48 -0.49 0.57 16 11 C 0.60 11.17 8.07 -12.44 -0.10 11.07 16 12 O -0.54 -10.97 17.73 5.32 0.09 -10.87 16 13 N -0.62 -12.27 3.69 -186.22 -0.69 -12.95 16 14 C 0.10 2.07 7.34 -8.35 -0.06 2.01 16 15 C 0.04 0.80 3.79 -91.11 -0.35 0.46 16 16 C -0.52 -12.91 8.83 -34.44 -0.30 -13.22 16 17 H 0.07 1.59 7.81 -52.49 -0.41 1.18 16 18 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.88 -23.99 13.26 55.43 0.74 -23.25 16 20 Si 0.90 19.87 29.54 -169.99 -5.02 14.85 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 C 0.10 2.03 8.17 -8.48 -0.07 1.96 16 25 N -0.22 -3.65 10.95 35.28 0.39 -3.27 16 26 O -0.18 -2.61 12.07 -11.36 -0.14 -2.75 16 27 C 0.03 0.33 4.85 -24.99 -0.12 0.21 16 28 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 29 C 0.10 0.92 6.11 -3.75 -0.02 0.90 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.08 1.19 7.68 -51.93 -0.40 0.79 16 34 H 0.10 1.30 8.10 -51.93 -0.42 0.88 16 35 H 0.08 1.64 8.10 -51.93 -0.42 1.22 16 36 H 0.07 1.61 7.47 -51.93 -0.39 1.22 16 37 H 0.07 1.79 8.11 -51.93 -0.42 1.37 16 38 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 0.80 8.06 -51.93 -0.42 0.38 16 LS Contribution 372.14 15.07 5.61 5.61 Total: -1.00 -32.13 372.14 -7.68 -39.81 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -5.39 Total: -0.92 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: -2.78 Total: 10.39 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -0.15 Total: -47.29 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: 0.05 Total: -22.45 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.13 -7.68 -39.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271095203.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.028 kcal (2) G-P(sol) polarization free energy of solvation -32.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds