Wall clock time and date at job start Tue Mar 31 2020 16:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47191 * 1 3 3 C 1.17405 * 179.97438 * 2 1 4 4 C 1.43198 * 179.97438 * 144.68856 * 3 2 1 5 5 O 1.21613 * 120.00550 * 318.25018 * 4 3 2 6 6 N 1.34786 * 119.99554 * 138.24778 * 4 3 2 7 7 C 1.46676 * 125.31265 * 179.97438 * 6 4 3 8 8 C 1.54012 * 106.91489 * 161.76616 * 7 6 4 9 9 H 1.09000 * 113.44158 * 263.66185 * 8 7 6 10 10 C 1.51707 * 108.80545 * 135.34901 * 8 7 6 11 11 C 1.47593 * 125.75577 * 86.89217 * 10 8 7 12 12 O 1.21554 * 120.00046 * 0.02942 * 11 10 8 13 13 N 1.34775 * 120.00016 * 180.02562 * 11 10 8 14 14 C 1.47074 * 136.05415 * 359.63366 * 13 11 10 15 15 C 1.53753 * 87.88656 * 152.96122 * 14 13 11 16 16 C 1.50706 * 114.26772 * 139.78956 * 15 14 13 17 17 H 1.07996 * 119.99727 * 266.47154 * 16 15 14 18 18 C 1.37869 * 120.00011 * 86.47639 * 16 15 14 19 19 N 1.31519 * 119.99832 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00034 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47244 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47059 * 119.99851 * 20 18 16 23 23 H 1.48507 * 109.46800 * 239.99667 * 20 18 16 24 24 C 1.47068 * 136.05803 * 180.02562 * 13 11 10 25 25 N 1.28969 * 108.44830 * 266.89478 * 10 8 7 26 26 O 1.41377 * 112.89856 * 0.24391 * 25 10 8 27 27 C 1.43982 * 107.64057 * 342.05336 * 26 25 10 28 28 H 1.09002 * 113.13607 * 263.34343 * 27 26 25 29 29 C 1.46604 * 125.31768 * 0.04532 * 6 4 3 30 30 H 1.09004 * 109.47053 * 257.06217 * 1 2 3 31 31 H 1.09002 * 109.47441 * 17.06221 * 1 2 3 32 32 H 1.09003 * 109.47430 * 137.06183 * 1 2 3 33 33 H 1.09002 * 109.97951 * 281.14454 * 7 6 4 34 34 H 1.09000 * 109.98073 * 42.39431 * 7 6 4 35 35 H 1.09002 * 113.46449 * 267.68956 * 14 13 11 36 36 H 1.08997 * 113.47161 * 38.13226 * 14 13 11 37 37 H 1.08994 * 114.39551 * 272.67592 * 15 14 13 38 38 H 0.97004 * 119.99547 * 180.02562 * 19 18 16 39 39 H 1.09001 * 113.46851 * 321.86002 * 24 13 11 40 40 H 1.08997 * 113.46795 * 92.24701 * 24 13 11 41 41 H 1.08997 * 109.73788 * 300.88747 * 29 6 4 42 42 H 1.08996 * 109.74335 * 61.54259 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4719 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0779 0.0017 -0.0004 5 8 4.6869 -0.7835 0.7007 6 7 4.7509 0.8731 -0.7779 7 6 6.2112 0.9760 -0.8684 8 6 6.5269 1.7396 -2.1681 9 1 6.7536 1.0863 -3.0107 10 6 7.5964 2.7760 -1.8789 11 6 9.0537 2.5452 -1.9171 12 8 9.4877 1.4457 -2.2002 13 7 9.9032 3.5537 -1.6381 14 6 9.7785 4.9729 -1.2728 15 6 11.1327 4.8484 -0.5554 16 6 12.0408 6.0375 -0.7358 17 1 12.7732 6.0421 -1.5295 18 6 11.9367 7.1194 0.1124 19 7 11.0444 7.1139 1.0787 20 14 13.0618 8.5936 -0.1116 21 1 13.9694 8.3534 -1.2621 22 1 12.2438 9.8057 -0.3704 23 1 13.8669 8.7935 1.1202 24 6 11.3628 3.7210 -1.5718 25 7 7.0166 3.8923 -1.5941 26 8 5.6061 3.8052 -1.6331 27 6 5.2624 2.6246 -2.3822 28 1 5.0374 2.8317 -3.4285 29 6 4.1375 1.8670 -1.6640 30 1 -0.3633 -0.2301 1.0016 31 1 -0.3634 0.9824 -0.3015 32 1 -0.3634 -0.7523 -0.7001 33 1 6.5998 1.5246 -0.0103 34 1 6.6532 -0.0196 -0.9048 35 1 9.8018 5.6454 -2.1303 36 1 8.9460 5.1763 -0.5994 37 1 11.0650 4.5110 0.4788 38 1 10.9709 7.8753 1.6752 39 1 11.8801 2.8578 -1.1531 40 1 11.8035 4.0629 -2.5083 41 1 3.5049 1.3662 -2.3968 42 1 3.5398 2.5644 -1.0773 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271095203.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:32 Heat of formation + Delta-G solvation = 42.509353 kcal Electronic energy + Delta-G solvation = -27427.010593 eV Core-core repulsion = 23377.023160 eV Total energy + Delta-G solvation = -4049.987433 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.67653 -41.21021 -40.49441 -38.89250 -37.48419 -35.31521 -34.85839 -34.57453 -32.38888 -31.14708 -30.18002 -29.46780 -27.46728 -26.77187 -26.17070 -24.61599 -22.99310 -22.50994 -21.85807 -20.04443 -19.56144 -18.84064 -18.38659 -17.98604 -17.73785 -16.99330 -16.87708 -16.57257 -16.44450 -16.19208 -15.94047 -15.51996 -15.17252 -14.78891 -14.69183 -14.48260 -14.37873 -14.21663 -14.08884 -13.79771 -13.62156 -13.32976 -13.29590 -13.13419 -12.88888 -12.78389 -12.62067 -12.21847 -12.09221 -11.83776 -11.65394 -11.36115 -11.28488 -11.11123 -11.00523 -10.99192 -10.57138 -10.10788 -9.75918 -8.17482 -6.29409 -0.32880 0.35837 1.07942 1.30626 1.46742 1.50095 1.60727 1.65923 1.77202 1.82273 2.33350 2.45319 2.72883 2.84370 3.02725 3.05787 3.13201 3.21363 3.51115 3.83908 3.89044 4.07883 4.19601 4.23173 4.28724 4.36048 4.43364 4.45984 4.48407 4.62417 4.66893 4.76726 4.78267 4.80438 4.84029 4.88869 5.02128 5.03520 5.56809 5.79723 5.81666 5.98879 6.19214 6.19862 6.53518 6.67322 6.80349 6.81471 7.41190 8.92824 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.020474 B = 0.002427 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.255404 B =11533.610815 C =11997.528020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.025 4.025 3 C -0.296 4.296 4 C 0.650 3.350 5 O -0.570 6.570 6 N -0.604 5.604 7 C 0.120 3.880 8 C -0.092 4.092 9 H 0.164 0.836 10 C 0.060 3.940 11 C 0.598 3.402 12 O -0.556 6.556 13 N -0.625 5.625 14 C 0.117 3.883 15 C 0.020 3.980 16 C -0.524 4.524 17 H 0.074 0.926 18 C 0.017 3.983 19 N -0.920 5.920 20 Si 0.961 3.039 21 H -0.259 1.259 22 H -0.282 1.282 23 H -0.285 1.285 24 C 0.112 3.888 25 N -0.243 5.243 26 O -0.189 6.189 27 C 0.039 3.961 28 H 0.172 0.828 29 C 0.104 3.896 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.038 0.962 38 H 0.264 0.736 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.131 0.869 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.914 -9.740 -9.703 25.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.027 4.027 3 C -0.299 4.299 4 C 0.441 3.559 5 O -0.451 6.451 6 N -0.336 5.336 7 C -0.004 4.004 8 C -0.113 4.113 9 H 0.181 0.819 10 C -0.135 4.135 11 C 0.385 3.615 12 O -0.435 6.435 13 N -0.358 5.358 14 C -0.006 4.006 15 C 0.001 3.999 16 C -0.562 4.562 17 H 0.092 0.908 18 C -0.183 4.183 19 N -0.559 5.559 20 Si 0.787 3.213 21 H -0.183 1.183 22 H -0.208 1.208 23 H -0.211 1.211 24 C -0.009 4.009 25 N 0.015 4.985 26 O -0.212 6.212 27 C -0.019 4.019 28 H 0.189 0.811 29 C -0.018 4.018 30 H 0.125 0.875 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.068 0.932 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.117 0.883 41 H 0.149 0.851 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.580 -9.650 -8.974 25.286 hybrid contribution 0.721 0.073 0.315 0.791 sum -20.859 -9.577 -8.659 24.531 Atomic orbital electron populations 1.19590 0.79630 1.06300 1.05862 1.23714 0.94594 0.92500 0.91938 1.20122 0.91927 1.08776 1.09065 1.14508 0.83803 0.79114 0.78452 1.90848 1.70083 1.41220 1.42931 1.47948 1.06619 1.35453 1.43582 1.21726 0.80803 1.01979 0.95878 1.23432 0.89466 0.97812 1.00635 0.81851 1.25753 0.95570 0.93262 0.98912 1.16633 0.83055 0.83651 0.78129 1.90780 1.77609 1.23849 1.51225 1.49980 1.10078 1.11791 1.63953 1.23540 1.00861 0.77890 0.98292 1.20318 0.92608 0.93437 0.93546 1.21233 1.18974 1.00688 1.15329 0.90809 1.25834 0.96568 1.01512 0.94361 1.70095 1.35639 1.31797 1.18325 0.85452 0.78765 0.78877 0.78239 1.18296 1.20801 1.21099 1.23398 0.78373 0.98395 1.00687 1.78710 0.91279 1.20478 1.08036 1.91271 1.11708 1.45099 1.73134 1.25058 0.93385 0.83757 0.99723 0.81079 1.22209 0.95001 0.90360 0.94205 0.87493 0.86532 0.86511 0.93175 0.88820 0.89685 0.92577 0.94335 0.92717 0.91161 0.88294 0.85137 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.15 10.32 70.17 0.72 0.58 16 2 C -0.03 -0.35 14.13 31.12 0.44 0.09 16 3 C -0.30 -6.44 12.75 30.01 0.38 -6.06 16 4 C 0.65 18.37 7.68 85.49 0.66 19.02 16 5 O -0.57 -21.13 17.36 -4.07 -0.07 -21.20 16 6 N -0.60 -14.33 3.31 -827.19 -2.74 -17.07 16 7 C 0.12 3.22 6.34 86.69 0.55 3.77 16 8 C -0.09 -2.07 4.10 -9.90 -0.04 -2.11 16 9 H 0.16 2.84 8.14 -2.39 -0.02 2.82 16 10 C 0.06 1.89 6.22 45.77 0.28 2.17 16 11 C 0.60 22.50 8.07 86.71 0.70 23.20 16 12 O -0.56 -22.49 17.73 -3.88 -0.07 -22.56 16 13 N -0.63 -25.04 3.69 -861.36 -3.18 -28.22 16 14 C 0.12 5.02 7.34 83.27 0.61 5.63 16 15 C 0.02 0.96 3.79 -11.11 -0.04 0.91 16 16 C -0.52 -26.25 8.83 25.60 0.23 -26.02 16 17 H 0.07 3.50 7.81 -2.91 -0.02 3.48 16 18 C 0.02 0.91 5.46 84.65 0.46 1.37 16 19 N -0.92 -51.44 13.26 21.45 0.28 -51.15 16 20 Si 0.96 40.87 29.54 68.60 2.03 42.89 16 21 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 22 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 C 0.11 4.45 8.17 83.20 0.68 5.13 16 25 N -0.24 -8.09 10.95 -42.30 -0.46 -8.55 16 26 O -0.19 -5.17 12.07 -38.29 -0.46 -5.63 16 27 C 0.04 0.67 4.85 31.72 0.15 0.82 16 28 H 0.17 1.56 8.14 -2.39 -0.02 1.54 16 29 C 0.10 1.58 6.11 86.51 0.53 2.11 16 30 H 0.11 0.09 8.14 -2.38 -0.02 0.07 16 31 H 0.12 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 33 H 0.05 1.62 7.68 -2.39 -0.02 1.60 16 34 H 0.09 2.58 8.10 -2.39 -0.02 2.56 16 35 H 0.09 3.54 8.10 -2.39 -0.02 3.53 16 36 H 0.06 2.59 7.47 -2.39 -0.02 2.57 16 37 H 0.04 2.05 8.11 -2.39 -0.02 2.03 16 38 H 0.26 14.05 8.31 -92.70 -0.77 13.28 16 39 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 40 H 0.10 3.57 8.10 -2.39 -0.02 3.55 16 41 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.10 1.44 8.06 -2.39 -0.02 1.42 16 Total: -1.00 -74.08 372.14 2.71 -71.37 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 1.06 Total: 9.49 kcal Atomic # 6 Polarization: 24.31 SS G_CDS: 6.32 Total: 30.63 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -6.09 Total: -104.99 kcal Atomic # 8 Polarization: -48.79 SS G_CDS: -0.60 Total: -49.39 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.89 kcal Total: -74.08 2.71 -71.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271095203.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.879 kcal (2) G-P(sol) polarization free energy of solvation -74.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds