Wall clock time and date at job start Tue Mar 31 2020 16:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35252 * 126.69682 * 2 1 4 4 C 1.42022 * 103.95531 * 179.97438 * 3 2 1 5 5 N 1.39506 * 126.89122 * 179.97438 * 4 3 2 6 6 C 1.34781 * 119.99981 * 359.97438 * 5 4 3 7 7 O 1.21278 * 119.99793 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00040 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47181 * 180.02562 * 8 6 5 10 10 N 1.46497 * 109.46914 * 179.97438 * 9 8 6 11 11 C 1.39791 * 120.00061 * 179.97438 * 10 9 8 12 12 C 1.38955 * 120.00159 * 359.72729 * 11 10 9 13 13 C 1.38013 * 119.98908 * 179.72266 * 12 11 10 14 14 C 1.38896 * 120.00589 * 0.55205 * 13 12 11 15 15 O 1.35794 * 119.99312 * 179.70218 * 14 13 12 16 16 C 1.34808 * 117.00227 * 174.48019 * 15 14 13 17 17 H 1.08003 * 120.00206 * 5.05440 * 16 15 14 18 18 C 1.38624 * 120.00236 * 185.06134 * 16 15 14 19 19 N 1.31587 * 119.99774 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99954 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47078 * 89.99801 * 20 18 16 22 22 H 1.48500 * 109.47109 * 209.99667 * 20 18 16 23 23 H 1.48498 * 109.47179 * 329.99668 * 20 18 16 24 24 C 1.38898 * 120.01477 * 359.72449 * 14 13 12 25 25 C 1.38012 * 120.00448 * 359.97438 * 24 14 13 26 26 N 1.30716 * 106.21525 * 0.23312 * 4 3 2 27 27 O 1.20911 * 111.47476 * 359.58173 * 26 4 3 28 28 H 1.08994 * 109.47771 * 89.99945 * 1 2 3 29 29 H 1.09000 * 109.47018 * 210.00478 * 1 2 3 30 30 H 1.09005 * 109.46888 * 330.00192 * 1 2 3 31 31 H 1.08000 * 128.01891 * 359.95523 * 3 2 1 32 32 H 0.96996 * 120.00300 * 179.97438 * 5 4 3 33 33 H 1.09007 * 109.47109 * 300.00239 * 8 6 5 34 34 H 1.09005 * 109.47300 * 59.99991 * 8 6 5 35 35 H 1.08998 * 109.47035 * 300.00160 * 9 8 6 36 36 H 1.08997 * 109.47239 * 60.00188 * 9 8 6 37 37 H 0.96996 * 120.00509 * 0.02562 * 10 9 8 38 38 H 1.07995 * 120.00179 * 359.97438 * 12 11 10 39 39 H 1.07996 * 119.99452 * 180.25664 * 13 12 11 40 40 H 0.96993 * 119.99534 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.00050 * 179.97438 * 24 14 13 42 42 H 1.07994 * 120.00105 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.0845 0.0000 4 6 3.6250 0.5354 0.0006 5 7 4.8287 1.2407 0.0004 6 6 4.8200 2.5885 -0.0011 7 8 3.7658 3.1881 -0.0017 8 6 6.1202 3.3503 -0.0019 9 6 5.8310 4.8527 -0.0029 10 7 7.0950 5.5933 -0.0031 11 6 7.0861 6.9912 -0.0045 12 6 5.8784 7.6783 -0.0114 13 6 5.8699 9.0584 -0.0070 14 6 7.0684 9.7604 -0.0072 15 8 7.0597 11.1183 -0.0090 16 6 8.2512 11.7382 0.1064 17 1 9.1629 11.1591 0.1126 18 6 8.3065 13.1189 0.2173 19 7 7.1958 13.8245 0.2094 20 14 9.9576 13.9776 0.3779 21 1 10.4742 14.3139 -0.9732 22 1 9.7927 15.2235 1.1690 23 1 10.9185 13.0782 1.0656 24 6 8.2758 9.0738 -0.0061 25 6 8.2849 7.6937 -0.0043 26 7 3.4764 -0.7632 -0.0042 27 8 2.3083 -1.0752 0.0007 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 2.0305 2.1263 -0.0007 32 1 5.6718 0.7612 0.0012 33 1 6.6936 3.0916 0.8883 34 1 6.6935 3.0897 -0.8917 35 1 5.2575 5.1117 -0.8929 36 1 5.2581 5.1130 0.8870 37 1 7.9382 5.1137 -0.0030 38 1 4.9466 7.1324 -0.0161 39 1 4.9312 9.5925 -0.0081 40 1 7.2346 14.7905 0.2866 41 1 9.2075 9.6199 -0.0067 42 1 9.2237 7.1599 -0.0038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345617880.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:45 Heat of formation + Delta-G solvation = 35.815623 kcal Electronic energy + Delta-G solvation = -25884.561535 eV Core-core repulsion = 21834.283839 eV Total energy + Delta-G solvation = -4050.277695 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.24085 -40.60376 -39.01114 -37.20444 -36.09279 -34.86834 -34.01566 -32.66072 -32.11483 -30.93906 -30.12156 -28.22016 -27.18411 -25.41479 -24.50718 -23.49219 -22.14520 -21.41903 -20.89422 -20.65658 -18.06795 -17.91555 -17.73910 -17.62346 -16.96916 -16.87677 -16.33808 -16.19908 -15.15445 -14.51332 -14.47862 -14.39826 -14.00223 -13.93500 -13.82789 -13.70450 -13.44478 -13.35476 -12.86753 -12.73927 -12.48960 -12.40367 -12.04154 -12.02553 -11.63193 -11.54813 -11.30492 -11.27972 -10.91681 -10.56257 -10.52788 -10.35044 -9.79416 -9.29132 -9.23939 -9.17425 -8.45189 -8.16225 -6.42284 -6.31710 -3.89044 0.99779 1.56025 2.02261 2.21353 2.38936 2.56980 2.75304 3.18764 3.19595 3.24160 3.60955 3.91881 4.06440 4.23771 4.41412 4.56581 4.62641 4.69459 4.70573 4.84177 4.94835 5.01483 5.14448 5.20769 5.38285 5.44070 5.54741 5.65184 5.69746 5.73578 5.82913 5.96388 6.20878 6.25005 6.53446 6.58304 6.86693 6.90232 7.14586 7.31889 7.42709 7.45345 7.63089 7.90470 7.94362 8.12605 8.19355 9.14130 9.88722 10.87007 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.037002 B = 0.001596 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.532154 B =17538.695620 C =18260.768747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.023 4.023 3 C -0.227 4.227 4 C 0.247 3.753 5 N -0.635 5.635 6 C 0.529 3.471 7 O -0.505 6.505 8 C -0.145 4.145 9 C 0.149 3.851 10 N -0.763 5.763 11 C 0.121 3.879 12 C -0.143 4.143 13 C -0.151 4.151 14 C 0.115 3.885 15 O -0.188 6.188 16 C -0.387 4.387 17 H 0.088 0.912 18 C 0.036 3.964 19 N -0.868 5.868 20 Si 0.938 3.062 21 H -0.275 1.275 22 H -0.279 1.279 23 H -0.269 1.269 24 C -0.192 4.192 25 C -0.140 4.140 26 N -0.393 5.393 27 O 0.095 5.905 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.191 0.809 32 H 0.420 0.580 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.390 0.610 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.267 0.733 41 H 0.128 0.872 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.025 -28.564 -0.297 29.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.086 4.086 3 C -0.250 4.250 4 C -0.002 4.002 5 N -0.287 5.287 6 C 0.316 3.684 7 O -0.376 6.376 8 C -0.186 4.186 9 C 0.023 3.977 10 N -0.400 5.400 11 C 0.023 3.977 12 C -0.165 4.165 13 C -0.171 4.171 14 C 0.062 3.938 15 O -0.093 6.093 16 C -0.464 4.464 17 H 0.106 0.894 18 C -0.167 4.167 19 N -0.505 5.505 20 Si 0.763 3.237 21 H -0.201 1.201 22 H -0.204 1.204 23 H -0.194 1.194 24 C -0.212 4.212 25 C -0.162 4.162 26 N -0.109 5.109 27 O 0.035 5.965 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.208 0.792 32 H 0.257 0.743 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.223 0.777 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.077 0.923 41 H 0.145 0.855 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.403 -28.700 -0.301 29.641 hybrid contribution 1.508 0.619 0.079 1.632 sum -5.895 -28.081 -0.222 28.694 Atomic orbital electron populations 1.20370 0.83612 1.04859 1.04340 1.24484 0.96567 0.85749 1.01843 1.22757 0.89232 1.02252 1.10771 1.20560 0.88609 0.88884 1.02126 1.42632 1.06150 1.06613 1.73296 1.20787 0.92317 0.80434 0.74868 1.90702 1.32917 1.67751 1.46279 1.21781 0.94439 0.96590 1.05754 1.20778 0.87501 0.86959 1.02418 1.44073 1.05941 1.02748 1.87189 1.17332 0.93789 0.82301 1.04230 1.20229 0.95655 0.93324 1.07265 1.20042 0.96365 0.92709 1.07934 1.19256 0.92999 0.85234 0.96298 1.83987 1.32561 1.12402 1.80330 1.21235 0.83316 0.90020 1.51820 0.89443 1.25221 0.98950 0.95497 0.97040 1.70052 1.26535 1.06716 1.47184 0.85762 0.80461 0.78949 0.78505 1.20072 1.20416 1.19380 1.20984 0.98456 0.93454 1.08264 1.20216 0.95238 0.93718 1.07031 1.74036 0.97734 1.13146 1.25964 1.84792 1.10401 1.32410 1.68930 0.89184 0.89698 0.88727 0.79161 0.74336 0.87516 0.87518 0.91927 0.91924 0.77684 0.86944 0.86461 0.92304 0.85483 0.87616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.45 36.00 0.38 0.11 16 2 C -0.02 -0.18 7.48 -35.37 -0.26 -0.44 16 3 C -0.23 -2.20 9.79 -39.20 -0.38 -2.58 16 4 C 0.25 2.50 8.18 -154.82 -1.27 1.24 16 5 N -0.63 -4.90 5.42 -11.44 -0.06 -4.96 16 6 C 0.53 4.60 7.79 -10.98 -0.09 4.51 16 7 O -0.50 -6.05 13.26 5.56 0.07 -5.98 16 8 C -0.15 -0.94 5.81 -27.89 -0.16 -1.10 16 9 C 0.15 1.58 4.20 -4.04 -0.02 1.56 16 10 N -0.76 -9.36 5.74 -58.58 -0.34 -9.69 16 11 C 0.12 2.05 6.66 -83.70 -0.56 1.49 16 12 C -0.14 -2.62 9.31 -39.40 -0.37 -2.98 16 13 C -0.15 -3.26 9.98 -39.42 -0.39 -3.65 16 14 C 0.11 2.82 6.65 -39.09 -0.26 2.56 16 15 O -0.19 -5.48 9.76 -0.03 0.00 -5.48 16 16 C -0.39 -11.03 9.48 30.87 0.29 -10.73 16 17 H 0.09 2.30 5.20 -52.48 -0.27 2.03 16 18 C 0.04 1.01 5.49 -17.51 -0.10 0.91 16 19 N -0.87 -26.04 13.67 55.48 0.76 -25.28 16 20 Si 0.94 20.93 29.55 -169.99 -5.02 15.90 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 C -0.19 -4.18 9.16 -39.42 -0.36 -4.54 16 25 C -0.14 -2.53 9.89 -39.40 -0.39 -2.92 16 26 N -0.39 -4.16 12.10 31.19 0.38 -3.78 16 27 O 0.09 0.90 11.19 17.04 0.19 1.09 16 28 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.19 1.94 6.22 -52.49 -0.33 1.61 16 32 H 0.42 1.98 8.82 -40.82 -0.36 1.62 16 33 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.75 7.89 -51.93 -0.41 0.34 16 36 H 0.06 0.75 7.92 -51.93 -0.41 0.34 16 37 H 0.39 3.82 8.48 -40.82 -0.35 3.47 16 38 H 0.11 1.82 6.73 -52.49 -0.35 1.47 16 39 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 40 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.13 2.77 5.63 -52.49 -0.30 2.48 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 364.36 15.07 5.49 5.49 Total: -1.00 -35.48 364.36 -7.33 -42.82 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -4.87 Total: 6.46 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -3.93 Total: -16.58 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.74 Total: -43.73 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.26 Total: -10.37 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.48 -7.33 -42.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345617880.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.634 kcal (2) G-P(sol) polarization free energy of solvation -35.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds