Wall clock time and date at job start Tue Mar 31 2020 16:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35252 * 126.69682 * 2 1 4 4 C 1.42022 * 103.95531 * 179.97438 * 3 2 1 5 5 N 1.39506 * 126.89122 * 179.97438 * 4 3 2 6 6 C 1.34781 * 119.99981 * 359.97438 * 5 4 3 7 7 O 1.21278 * 119.99793 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00040 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47181 * 180.02562 * 8 6 5 10 10 N 1.46497 * 109.46914 * 179.97438 * 9 8 6 11 11 C 1.39791 * 120.00061 * 179.97438 * 10 9 8 12 12 C 1.38955 * 120.00159 * 359.72729 * 11 10 9 13 13 C 1.38013 * 119.98908 * 179.72266 * 12 11 10 14 14 C 1.38896 * 120.00589 * 0.55205 * 13 12 11 15 15 O 1.35794 * 119.99312 * 179.70218 * 14 13 12 16 16 C 1.34808 * 117.00227 * 174.48019 * 15 14 13 17 17 H 1.08003 * 120.00206 * 5.05440 * 16 15 14 18 18 C 1.38624 * 120.00236 * 185.06134 * 16 15 14 19 19 N 1.31587 * 119.99774 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99954 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47078 * 89.99801 * 20 18 16 22 22 H 1.48500 * 109.47109 * 209.99667 * 20 18 16 23 23 H 1.48498 * 109.47179 * 329.99668 * 20 18 16 24 24 C 1.38898 * 120.01477 * 359.72449 * 14 13 12 25 25 C 1.38012 * 120.00448 * 359.97438 * 24 14 13 26 26 N 1.30716 * 106.21525 * 0.23312 * 4 3 2 27 27 O 1.20911 * 111.47476 * 359.58173 * 26 4 3 28 28 H 1.08994 * 109.47771 * 89.99945 * 1 2 3 29 29 H 1.09000 * 109.47018 * 210.00478 * 1 2 3 30 30 H 1.09005 * 109.46888 * 330.00192 * 1 2 3 31 31 H 1.08000 * 128.01891 * 359.95523 * 3 2 1 32 32 H 0.96996 * 120.00300 * 179.97438 * 5 4 3 33 33 H 1.09007 * 109.47109 * 300.00239 * 8 6 5 34 34 H 1.09005 * 109.47300 * 59.99991 * 8 6 5 35 35 H 1.08998 * 109.47035 * 300.00160 * 9 8 6 36 36 H 1.08997 * 109.47239 * 60.00188 * 9 8 6 37 37 H 0.96996 * 120.00509 * 0.02562 * 10 9 8 38 38 H 1.07995 * 120.00179 * 359.97438 * 12 11 10 39 39 H 1.07996 * 119.99452 * 180.25664 * 13 12 11 40 40 H 0.96993 * 119.99534 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.00050 * 179.97438 * 24 14 13 42 42 H 1.07994 * 120.00105 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.0845 0.0000 4 6 3.6250 0.5354 0.0006 5 7 4.8287 1.2407 0.0004 6 6 4.8200 2.5885 -0.0011 7 8 3.7658 3.1881 -0.0017 8 6 6.1202 3.3503 -0.0019 9 6 5.8310 4.8527 -0.0029 10 7 7.0950 5.5933 -0.0031 11 6 7.0861 6.9912 -0.0045 12 6 5.8784 7.6783 -0.0114 13 6 5.8699 9.0584 -0.0070 14 6 7.0684 9.7604 -0.0072 15 8 7.0597 11.1183 -0.0090 16 6 8.2512 11.7382 0.1064 17 1 9.1629 11.1591 0.1126 18 6 8.3065 13.1189 0.2173 19 7 7.1958 13.8245 0.2094 20 14 9.9576 13.9776 0.3779 21 1 10.4742 14.3139 -0.9732 22 1 9.7927 15.2235 1.1690 23 1 10.9185 13.0782 1.0656 24 6 8.2758 9.0738 -0.0061 25 6 8.2849 7.6937 -0.0043 26 7 3.4764 -0.7632 -0.0042 27 8 2.3083 -1.0752 0.0007 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 2.0305 2.1263 -0.0007 32 1 5.6718 0.7612 0.0012 33 1 6.6936 3.0916 0.8883 34 1 6.6935 3.0897 -0.8917 35 1 5.2575 5.1117 -0.8929 36 1 5.2581 5.1130 0.8870 37 1 7.9382 5.1137 -0.0030 38 1 4.9466 7.1324 -0.0161 39 1 4.9312 9.5925 -0.0081 40 1 7.2346 14.7905 0.2866 41 1 9.2075 9.6199 -0.0067 42 1 9.2237 7.1599 -0.0038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345617880.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:44 Heat of formation + Delta-G solvation = 11.038433 kcal Electronic energy + Delta-G solvation = -25885.635954 eV Core-core repulsion = 21834.283839 eV Total energy + Delta-G solvation = -4051.352115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.93516 -41.32057 -40.67199 -38.78102 -36.87034 -36.11072 -34.59743 -34.15322 -33.34569 -32.08192 -31.61477 -28.72598 -28.59696 -27.19720 -25.58864 -24.42888 -23.45021 -22.37569 -22.08866 -21.62742 -19.65532 -18.94031 -18.77107 -18.44740 -18.22870 -17.75616 -17.39005 -17.01917 -16.54669 -16.15276 -15.48739 -15.47208 -15.37847 -15.18544 -14.95555 -14.50168 -14.38431 -14.34995 -14.05978 -13.99662 -13.47982 -13.41538 -13.32773 -13.00808 -12.88348 -12.78012 -12.72054 -12.29125 -12.25767 -12.20642 -12.07832 -11.26457 -11.08078 -10.90320 -10.42360 -10.18315 -9.97229 -9.76134 -8.38092 -7.94035 -6.01997 0.33501 0.59933 0.88784 0.93742 1.37475 1.37824 1.47754 1.55420 1.71536 2.16919 2.23797 2.64297 2.92684 3.26269 3.26813 3.53847 3.67548 3.74051 4.00795 4.06102 4.10779 4.16580 4.20069 4.34167 4.50582 4.58735 4.69712 4.72316 4.74710 4.84293 4.89727 4.90073 5.02033 5.14429 5.15948 5.29535 5.30532 5.47489 5.56539 5.79371 5.97317 6.03320 6.12632 6.56476 6.82263 7.06788 7.10492 7.22615 7.94836 8.86522 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.037002 B = 0.001596 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.532154 B =17538.695620 C =18260.768747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.006 4.006 3 C -0.256 4.256 4 C 0.236 3.764 5 N -0.623 5.623 6 C 0.529 3.471 7 O -0.543 6.543 8 C -0.129 4.129 9 C 0.144 3.856 10 N -0.742 5.742 11 C 0.151 3.849 12 C -0.147 4.147 13 C -0.159 4.159 14 C 0.062 3.938 15 O -0.244 6.244 16 C -0.406 4.406 17 H 0.100 0.900 18 C -0.030 4.030 19 N -0.928 5.928 20 Si 1.018 2.982 21 H -0.264 1.264 22 H -0.274 1.274 23 H -0.252 1.252 24 C -0.194 4.194 25 C -0.139 4.139 26 N -0.411 5.411 27 O 0.086 5.914 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.182 0.818 32 H 0.434 0.566 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.410 0.590 38 H 0.135 0.865 39 H 0.109 0.891 40 H 0.269 0.731 41 H 0.121 0.879 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.362 -32.024 -0.226 32.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.070 4.070 3 C -0.280 4.280 4 C -0.014 4.014 5 N -0.277 5.277 6 C 0.318 3.682 7 O -0.418 6.418 8 C -0.169 4.169 9 C 0.019 3.981 10 N -0.378 5.378 11 C 0.051 3.949 12 C -0.169 4.169 13 C -0.179 4.179 14 C 0.013 3.987 15 O -0.152 6.152 16 C -0.483 4.483 17 H 0.118 0.882 18 C -0.226 4.226 19 N -0.567 5.567 20 Si 0.838 3.162 21 H -0.189 1.189 22 H -0.199 1.199 23 H -0.176 1.176 24 C -0.214 4.214 25 C -0.161 4.161 26 N -0.130 5.130 27 O 0.028 5.972 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.200 0.800 32 H 0.274 0.726 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.246 0.754 38 H 0.153 0.847 39 H 0.127 0.873 40 H 0.078 0.922 41 H 0.139 0.861 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.717 -32.301 -0.234 32.804 hybrid contribution 0.827 1.279 0.042 1.523 sum -4.890 -31.022 -0.192 31.406 Atomic orbital electron populations 1.20618 0.80651 1.06224 1.05730 1.25137 0.97996 0.84688 0.99138 1.22802 0.89805 1.02409 1.12939 1.20862 0.89570 0.89039 1.01908 1.42576 1.06189 1.06387 1.72511 1.21198 0.92586 0.80551 0.73900 1.90705 1.34456 1.68498 1.48129 1.21688 0.93548 0.92922 1.08748 1.20826 0.86292 0.89617 1.01362 1.44062 1.07857 1.00810 1.85093 1.17456 0.92792 0.84565 1.00123 1.20439 0.97542 0.91999 1.06961 1.20213 0.95403 0.94213 1.08058 1.19747 0.95144 0.84252 0.99573 1.83936 1.33200 1.14824 1.83219 1.21781 0.83926 0.90833 1.51715 0.88233 1.26560 1.03529 0.96015 0.96501 1.70216 1.29521 1.07045 1.49960 0.84591 0.75055 0.77580 0.78991 1.18950 1.19905 1.17583 1.21085 0.97114 0.95200 1.07956 1.20523 0.97408 0.92249 1.05921 1.74018 0.98381 1.13380 1.27199 1.84759 1.10409 1.32969 1.69066 0.87587 0.87938 0.87708 0.80038 0.72608 0.84458 0.84439 0.93069 0.93106 0.75378 0.84699 0.87296 0.92204 0.86117 0.83541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.45 71.23 0.74 0.36 16 2 C -0.01 -0.09 7.48 25.00 0.19 0.10 16 3 C -0.26 -4.84 9.79 22.52 0.22 -4.62 16 4 C 0.24 4.53 8.18 134.11 1.10 5.62 16 5 N -0.62 -8.29 5.42 -309.53 -1.68 -9.97 16 6 C 0.53 7.91 7.79 87.66 0.68 8.59 16 7 O -0.54 -12.47 13.26 -3.02 -0.04 -12.51 16 8 C -0.13 -1.09 5.81 29.85 0.17 -0.92 16 9 C 0.14 2.54 4.20 86.38 0.36 2.90 16 10 N -0.74 -14.75 5.74 -339.26 -1.95 -16.69 16 11 C 0.15 4.65 6.66 38.21 0.25 4.90 16 12 C -0.15 -5.22 9.31 22.39 0.21 -5.01 16 13 C -0.16 -7.10 9.98 22.37 0.22 -6.88 16 14 C 0.06 3.20 6.65 22.59 0.15 3.35 16 15 O -0.24 -15.16 9.76 -23.01 -0.22 -15.38 16 16 C -0.41 -24.22 9.48 67.91 0.64 -23.57 16 17 H 0.10 5.40 5.20 -2.91 -0.02 5.39 16 18 C -0.03 -1.75 5.49 84.82 0.47 -1.29 16 19 N -0.93 -58.65 13.67 21.61 0.30 -58.36 16 20 Si 1.02 43.86 29.55 68.60 2.03 45.89 16 21 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 23 H -0.25 -10.00 7.11 99.48 0.71 -9.30 16 24 C -0.19 -8.46 9.16 22.37 0.20 -8.25 16 25 C -0.14 -4.62 9.89 22.39 0.22 -4.40 16 26 N -0.41 -8.34 12.10 -56.33 -0.68 -9.03 16 27 O 0.09 1.55 11.19 71.16 0.80 2.35 16 28 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.18 3.75 6.22 -2.91 -0.02 3.73 16 32 H 0.43 2.85 8.82 -92.71 -0.82 2.03 16 33 H 0.14 0.44 8.14 -2.38 -0.02 0.42 16 34 H 0.14 0.44 8.14 -2.38 -0.02 0.42 16 35 H 0.05 1.07 7.89 -2.39 -0.02 1.06 16 36 H 0.05 1.07 7.92 -2.39 -0.02 1.05 16 37 H 0.41 5.52 8.48 -92.71 -0.79 4.73 16 38 H 0.14 4.14 6.73 -2.91 -0.02 4.12 16 39 H 0.11 4.88 8.06 -2.91 -0.02 4.85 16 40 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 41 H 0.12 5.32 5.63 -2.91 -0.02 5.30 16 42 H 0.15 3.69 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -84.42 364.36 3.88 -80.54 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -0.51 Total: 22.28 kcal Atomic # 6 Polarization: -34.95 SS G_CDS: 5.84 Total: -29.11 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -4.01 Total: -94.04 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: 0.53 Total: -25.55 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -84.42 3.88 -80.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345617880.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.578 kcal (2) G-P(sol) polarization free energy of solvation -84.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds