Wall clock time and date at job start Tue Mar 31 2020 16:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50707 * 109.47124 * 2 1 4 4 N 1.29945 * 126.28584 * 90.02660 * 3 2 1 5 5 O 1.21300 * 110.25015 * 179.97438 * 4 3 2 6 6 C 1.33651 * 109.81164 * 0.02562 * 5 4 3 7 7 C 1.50701 * 126.55060 * 180.02562 * 6 5 4 8 8 O 1.42901 * 109.46712 * 269.97381 * 7 6 5 9 9 C 1.42908 * 113.99261 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.46646 * 180.02562 * 9 8 7 11 11 O 1.21283 * 120.00000 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99872 * 180.02562 * 10 9 8 13 13 C 1.39235 * 119.99964 * 175.70731 * 12 10 9 14 14 C 1.39482 * 119.83330 * 215.01264 * 13 12 10 15 15 C 1.36374 * 120.16674 * 179.75855 * 14 13 12 16 16 C 1.40865 * 119.82995 * 0.51452 * 15 14 13 17 17 C 1.41156 * 120.16111 * 179.72124 * 16 15 14 18 18 H 1.08003 * 119.99663 * 214.80235 * 17 16 15 19 19 C 1.39902 * 120.00209 * 34.79982 * 17 16 15 20 20 N 1.30869 * 120.00259 * 355.55512 * 19 17 16 21 21 Si 1.86808 * 119.99986 * 175.56191 * 19 17 16 22 22 H 1.48498 * 109.46799 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47109 * 119.99533 * 21 19 17 24 24 H 1.48499 * 109.47046 * 239.99936 * 21 19 17 25 25 C 1.40872 * 119.67181 * 359.73437 * 16 15 14 26 26 C 1.36371 * 119.82746 * 0.02562 * 25 16 15 27 27 N 1.31135 * 106.89434 * 359.76753 * 6 5 4 28 28 H 1.08997 * 109.47207 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46864 * 300.00229 * 1 2 3 30 30 H 1.09002 * 109.47575 * 59.99525 * 1 2 3 31 31 H 1.08995 * 109.46690 * 240.00392 * 2 1 3 32 32 H 1.08994 * 109.47399 * 119.99851 * 2 1 3 33 33 H 1.08993 * 109.46869 * 29.97211 * 7 6 5 34 34 H 1.09000 * 109.46930 * 149.97110 * 7 6 5 35 35 H 1.08995 * 109.46716 * 299.99280 * 9 8 7 36 36 H 1.08989 * 109.47423 * 60.00181 * 9 8 7 37 37 H 0.96994 * 119.99682 * 355.70391 * 12 10 9 38 38 H 1.08000 * 119.91386 * 0.02562 * 14 13 12 39 39 H 1.08001 * 120.07975 * 180.24640 * 15 14 13 40 40 H 0.96998 * 120.00341 * 179.97438 * 20 19 17 41 41 H 1.08002 * 120.08057 * 179.97438 * 25 16 15 42 42 H 1.07998 * 119.91162 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2892 2.1458 1.0475 5 8 2.6781 3.2448 0.7124 6 6 2.7067 3.3280 -0.6212 7 6 3.1296 4.5225 -1.4370 8 8 1.9934 5.3499 -1.6945 9 6 2.2868 6.5164 -2.4661 10 6 1.0235 7.3110 -2.6755 11 8 -0.0249 6.9169 -2.2102 12 7 1.0586 8.4590 -3.3807 13 6 -0.1216 9.1467 -3.6505 14 6 -0.2699 9.8219 -4.8619 15 6 -1.4249 10.4935 -5.1353 16 6 -2.4654 10.5132 -4.1859 17 6 -3.6616 11.2111 -4.4592 18 1 -4.1897 11.7107 -3.6605 19 6 -4.1630 11.2557 -5.7645 20 7 -3.4795 10.7254 -6.7465 21 14 -5.8081 12.0723 -6.1058 22 1 -6.3766 12.5900 -4.8354 23 1 -5.6148 13.1965 -7.0566 24 1 -6.7406 11.0791 -6.6965 25 6 -2.3062 9.8332 -2.9625 26 6 -1.1474 9.1619 -2.7054 27 7 2.3017 2.1699 -1.0841 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8770 5.0928 -0.8855 34 1 3.5549 4.1847 -2.3821 35 1 3.0168 7.1282 -1.9363 36 1 2.6942 6.2197 -3.4325 37 1 1.9061 8.8061 -3.7002 38 1 0.5304 9.8092 -5.5871 39 1 -1.5397 11.0126 -6.0754 40 1 -3.8273 10.7559 -7.6514 41 1 -3.0996 9.8443 -2.2298 42 1 -1.0237 8.6405 -1.7678 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361317648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:30 Heat of formation + Delta-G solvation = -9.983251 kcal Electronic energy + Delta-G solvation = -26274.949129 eV Core-core repulsion = 22222.685446 eV Total energy + Delta-G solvation = -4052.263683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.74792 -41.24972 -39.44886 -38.56864 -37.47054 -36.14641 -34.94448 -34.72348 -32.75093 -31.52755 -31.17713 -29.76009 -28.00694 -26.33320 -26.17088 -24.28748 -23.43859 -22.64631 -22.23130 -21.28518 -19.37846 -19.29426 -18.85782 -18.49831 -18.06811 -17.33168 -17.25220 -16.86991 -16.61918 -15.97094 -15.77399 -15.53540 -15.29016 -14.85505 -14.81572 -14.41787 -14.09437 -14.00863 -13.85552 -13.59548 -13.24689 -13.20648 -13.12331 -12.85170 -12.73802 -12.70422 -12.53323 -12.47036 -12.36570 -12.04335 -11.76829 -11.38802 -11.22643 -11.16789 -10.88490 -10.77431 -10.55498 -9.46601 -8.73368 -8.51053 -6.33606 -0.12337 0.78454 0.98551 1.13527 1.39217 1.43383 1.54113 1.56437 1.77624 2.06788 2.24099 2.52128 2.79736 2.91244 3.20946 3.65352 3.72679 3.85117 4.09208 4.13396 4.17801 4.26641 4.27813 4.38844 4.40542 4.41924 4.52813 4.69402 4.81984 4.87212 4.93903 4.96399 5.14183 5.14802 5.18416 5.33488 5.43565 5.69331 5.79448 5.91868 6.03898 6.15124 6.39511 6.67743 6.74665 6.96518 6.99966 7.00002 7.41861 8.41839 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.019327 B = 0.001925 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.374021 B =14540.563280 C =15393.621030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.032 4.032 3 C 0.163 3.837 4 N -0.402 5.402 5 O 0.078 5.922 6 C 0.185 3.815 7 C 0.154 3.846 8 O -0.400 6.400 9 C 0.061 3.939 10 C 0.490 3.510 11 O -0.572 6.572 12 N -0.637 5.637 13 C 0.023 3.977 14 C -0.115 4.115 15 C -0.159 4.159 16 C 0.066 3.934 17 C -0.498 4.498 18 H 0.070 0.930 19 C 0.027 3.973 20 N -0.840 5.840 21 Si 0.988 3.012 22 H -0.262 1.262 23 H -0.261 1.261 24 H -0.270 1.270 25 C -0.224 4.224 26 C -0.100 4.100 27 N -0.486 5.486 28 H 0.099 0.901 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.424 0.576 38 H 0.132 0.868 39 H 0.121 0.879 40 H 0.285 0.715 41 H 0.092 0.908 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.673 -13.957 6.064 24.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.071 4.071 3 C -0.109 4.109 4 N -0.111 5.111 5 O 0.020 5.980 6 C -0.036 4.036 7 C 0.077 3.923 8 O -0.318 6.318 9 C -0.018 4.018 10 C 0.278 3.722 11 O -0.450 6.450 12 N -0.285 5.285 13 C -0.071 4.071 14 C -0.135 4.135 15 C -0.179 4.179 16 C 0.063 3.937 17 C -0.529 4.529 18 H 0.089 0.911 19 C -0.185 4.185 20 N -0.468 5.468 21 Si 0.809 3.191 22 H -0.186 1.186 23 H -0.185 1.185 24 H -0.195 1.195 25 C -0.244 4.244 26 C -0.120 4.120 27 N -0.221 5.221 28 H 0.117 0.883 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.263 0.737 38 H 0.150 0.850 39 H 0.138 0.862 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 17.593 -14.921 6.721 24.027 hybrid contribution -0.677 0.711 -0.305 1.028 sum 16.915 -14.210 6.416 23.004 Atomic orbital electron populations 1.21739 0.93108 1.04144 1.01462 1.20172 0.96862 0.83796 1.06271 1.26613 0.99622 1.01731 0.82968 1.74624 1.18321 0.93417 1.24744 1.85266 1.60453 1.27031 1.25247 1.28981 0.95652 0.96941 0.81994 1.21077 0.87910 0.84492 0.98826 1.88004 1.33282 1.36189 1.74332 1.22379 0.93242 0.86596 0.99543 1.21328 0.91559 0.80987 0.78283 1.90731 1.34665 1.69967 1.49670 1.42705 1.08789 1.22374 1.54612 1.17275 0.89728 1.04685 0.95401 1.20592 0.98414 1.00037 0.94470 1.21199 0.92230 1.03436 1.01058 1.18056 0.93151 0.90803 0.91647 1.19740 1.07387 1.30938 0.94791 0.91134 1.26725 1.02756 0.93972 0.95014 1.69815 1.38735 1.36752 1.01513 0.85064 0.76584 0.78384 0.79047 1.18568 1.18540 1.19499 1.20925 0.98512 1.04756 1.00181 1.20518 0.94353 0.98893 0.98226 1.71911 1.17061 1.03083 1.30068 0.88265 0.93550 0.93534 0.86925 0.87316 0.84582 0.85120 0.84709 0.85422 0.73749 0.85036 0.86175 0.90442 0.89012 0.87836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.89 71.98 0.71 -1.56 16 2 C -0.03 -0.49 6.56 29.85 0.20 -0.30 16 3 C 0.16 3.77 7.47 138.46 1.03 4.81 16 4 N -0.40 -10.24 12.16 -60.30 -0.73 -10.98 16 5 O 0.08 1.85 11.31 74.76 0.85 2.69 16 6 C 0.19 3.89 8.14 88.38 0.72 4.61 16 7 C 0.15 1.88 6.56 71.24 0.47 2.35 16 8 O -0.40 -8.85 9.86 -129.94 -1.28 -10.13 16 9 C 0.06 0.95 6.42 71.24 0.46 1.41 16 10 C 0.49 15.06 7.74 87.66 0.68 15.73 16 11 O -0.57 -25.31 13.92 16.00 0.22 -25.09 16 12 N -0.64 -18.83 5.30 -303.10 -1.61 -20.44 16 13 C 0.02 0.96 6.31 38.57 0.24 1.20 16 14 C -0.12 -4.97 9.90 22.13 0.22 -4.75 16 15 C -0.16 -8.22 8.61 22.48 0.19 -8.03 16 16 C 0.07 3.66 5.55 -21.28 -0.12 3.54 16 17 C -0.50 -27.71 9.02 23.39 0.21 -27.50 16 18 H 0.07 3.83 7.85 -2.91 -0.02 3.80 16 19 C 0.03 1.40 5.42 85.24 0.46 1.87 16 20 N -0.84 -44.38 10.60 21.82 0.23 -44.15 16 21 Si 0.99 39.55 29.56 68.60 2.03 41.57 16 22 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 23 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 24 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 25 C -0.22 -11.91 9.74 22.48 0.22 -11.69 16 26 C -0.10 -4.88 8.61 22.13 0.19 -4.69 16 27 N -0.49 -11.79 11.55 -303.17 -3.50 -15.29 16 28 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.42 7.88 8.82 -92.71 -0.82 7.06 16 38 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 39 H 0.12 6.44 6.13 -2.91 -0.02 6.42 16 40 H 0.28 13.60 8.30 -92.71 -0.77 12.83 16 41 H 0.09 4.76 8.06 -2.91 -0.02 4.74 16 42 H 0.10 5.10 6.22 -2.91 -0.02 5.08 16 Total: -1.00 -82.95 368.24 2.34 -80.60 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.25 Total: 24.20 kcal Atomic # 6 Polarization: -28.87 SS G_CDS: 5.89 Total: -22.99 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -5.61 Total: -90.86 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.21 Total: -32.53 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.57 kcal Total: -82.95 2.34 -80.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361317648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.621 kcal (2) G-P(sol) polarization free energy of solvation -82.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds