Wall clock time and date at job start Tue Mar 31 2020 16:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47521 * 2 1 4 4 H 1.08998 * 109.46663 * 305.00145 * 3 2 1 5 5 N 1.46503 * 109.46780 * 64.99594 * 3 2 1 6 6 C 1.34767 * 120.00152 * 275.00130 * 5 3 2 7 7 O 1.21592 * 120.00465 * 359.97438 * 6 5 3 8 8 C 1.47542 * 120.00121 * 180.02562 * 6 5 3 9 9 C 1.39662 * 120.19242 * 359.97438 * 8 6 5 10 10 C 1.37830 * 119.91390 * 180.02562 * 9 8 6 11 11 C 1.38572 * 120.32905 * 0.02562 * 10 9 8 12 12 C 1.38030 * 120.39703 * 0.02562 * 11 10 9 13 13 C 1.38834 * 120.07018 * 359.68551 * 12 11 10 14 14 O 1.35521 * 120.15856 * 180.29541 * 13 12 11 15 15 C 1.34815 * 117.00278 * 354.39143 * 14 13 12 16 16 H 1.07999 * 119.99990 * 5.05349 * 15 14 13 17 17 C 1.38695 * 120.00023 * 185.05495 * 15 14 13 18 18 N 1.31521 * 119.99653 * 180.02562 * 17 15 14 19 19 Si 1.86793 * 120.00333 * 359.97438 * 17 15 14 20 20 H 1.48510 * 109.47091 * 89.99887 * 19 17 15 21 21 H 1.48494 * 109.47555 * 210.00154 * 19 17 15 22 22 H 1.48504 * 109.47156 * 330.00259 * 19 17 15 23 23 C 1.50695 * 109.47035 * 184.99867 * 3 2 1 24 24 N 1.29950 * 126.28470 * 284.68388 * 23 3 2 25 25 O 1.21300 * 110.24782 * 179.84676 * 24 23 3 26 26 C 1.33645 * 109.81125 * 0.42933 * 25 24 23 27 27 C 1.50704 * 126.54862 * 179.71854 * 26 25 24 28 28 N 1.31126 * 106.89706 * 359.73359 * 26 25 24 29 29 H 1.09002 * 109.47313 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46692 * 59.99959 * 1 2 3 31 31 H 1.08996 * 109.47534 * 300.00281 * 1 2 3 32 32 H 1.09006 * 109.46692 * 120.00041 * 2 1 3 33 33 H 1.09000 * 109.47295 * 239.99259 * 2 1 3 34 34 H 0.97005 * 119.99755 * 95.00565 * 5 3 2 35 35 H 1.07994 * 120.04815 * 0.03099 * 9 8 6 36 36 H 1.08006 * 119.83942 * 179.97438 * 10 9 8 37 37 H 1.07994 * 119.80165 * 180.02562 * 11 10 9 38 38 H 1.08003 * 119.95832 * 179.97438 * 12 11 10 39 39 H 0.97000 * 119.99811 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.46915 * 270.01611 * 27 26 25 41 41 H 1.08999 * 109.47675 * 30.02405 * 27 26 25 42 42 H 1.08999 * 109.47012 * 150.02406 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0974 1.2518 6 6 0.4352 2.6644 1.3669 7 8 -0.3412 2.6327 0.4317 8 6 0.0450 3.3245 2.6274 9 6 0.9337 3.3637 3.7041 10 6 0.5631 3.9814 4.8791 11 6 -0.6884 4.5642 4.9988 12 6 -1.5775 4.5322 3.9434 13 6 -1.2191 3.9196 2.7502 14 8 -2.0884 3.8924 1.7109 15 6 -3.3271 4.3745 1.9362 16 1 -3.5637 4.8334 2.8848 17 6 -4.2977 4.2811 0.9498 18 7 -5.5059 4.7518 1.1695 19 14 -3.8884 3.4880 -0.6911 20 1 -4.1724 2.0319 -0.6218 21 1 -4.7167 4.1035 -1.7588 22 1 -2.4505 3.6977 -0.9973 23 6 3.5419 1.4441 -0.1238 24 7 4.3913 1.1501 0.8148 25 8 5.5265 1.2428 0.3977 26 6 5.5088 1.6251 -0.8828 27 6 6.7073 1.8611 -1.7656 28 7 4.2496 1.7559 -1.2241 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 0.5138 0.8899 32 1 1.8932 -0.5139 0.8901 33 1 1.8933 -0.5139 -0.8899 34 1 2.2719 2.1231 1.9978 35 1 1.9101 2.9108 3.6161 36 1 1.2512 4.0107 5.7111 37 1 -0.9698 5.0463 5.9232 38 1 -2.5513 4.9883 4.0446 39 1 -6.1848 4.6861 0.4798 40 1 7.0187 2.9025 -1.6845 41 1 7.5242 1.2119 -1.4505 42 1 6.4456 1.6397 -2.8002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361352693.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:44 Heat of formation + Delta-G solvation = 37.240720 kcal Electronic energy + Delta-G solvation = -28323.163534 eV Core-core repulsion = 24272.947636 eV Total energy + Delta-G solvation = -4050.215898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.86849 -40.01578 -38.69661 -36.70270 -36.46888 -35.25288 -33.33760 -32.46855 -32.40580 -30.37370 -29.22388 -29.21036 -27.39937 -25.30268 -23.94291 -23.36103 -22.51398 -21.55189 -20.67422 -20.02971 -18.40611 -18.28380 -17.91724 -17.39396 -16.40317 -16.26020 -15.26394 -14.95884 -14.74446 -14.68103 -14.27235 -14.08107 -13.90087 -13.85506 -13.72940 -13.48855 -13.18576 -12.79711 -12.69462 -12.37589 -12.37053 -12.17846 -11.96731 -11.52368 -11.41659 -11.36745 -11.30062 -11.23076 -10.84701 -10.76350 -10.71210 -10.16854 -10.05781 -9.63696 -9.10694 -8.90682 -8.84757 -8.40962 -7.49967 -6.48179 -4.13324 0.86964 1.54134 1.91518 2.17419 2.53183 3.08047 3.31251 3.37315 3.45683 3.58944 3.65533 3.84947 4.34481 4.48736 4.60931 4.71435 4.80192 4.84166 4.95262 5.07571 5.08830 5.18309 5.26679 5.35891 5.43489 5.49594 5.60789 5.70334 5.72927 5.88009 5.94250 6.02065 6.08753 6.28196 6.35930 6.51498 6.60696 6.69958 6.81325 6.98754 7.13076 7.46222 7.65310 7.83398 7.91119 7.93672 8.76866 8.87356 9.49698 10.56884 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013345 B = 0.003749 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.623161 B = 7467.521377 C = 8867.027680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C 0.241 3.759 4 H 0.118 0.882 5 N -0.734 5.734 6 C 0.566 3.434 7 O -0.507 6.507 8 C -0.227 4.227 9 C -0.040 4.040 10 C -0.220 4.220 11 C -0.050 4.050 12 C -0.227 4.227 13 C 0.203 3.797 14 O -0.164 6.164 15 C -0.396 4.396 16 H 0.108 0.892 17 C 0.072 3.928 18 N -0.869 5.869 19 Si 0.900 3.100 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.237 1.237 23 C 0.172 3.828 24 N -0.376 5.376 25 O 0.078 5.922 26 C 0.176 3.824 27 C -0.061 4.061 28 N -0.474 5.474 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.398 0.602 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.139 0.861 39 H 0.282 0.718 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.663 -6.895 -1.637 23.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C 0.134 3.866 4 H 0.136 0.864 5 N -0.391 5.391 6 C 0.357 3.643 7 O -0.382 6.382 8 C -0.232 4.232 9 C -0.059 4.059 10 C -0.239 4.239 11 C -0.068 4.068 12 C -0.246 4.246 13 C 0.145 3.855 14 O -0.064 6.064 15 C -0.471 4.471 16 H 0.125 0.875 17 C -0.134 4.134 18 N -0.505 5.505 19 Si 0.725 3.275 20 H -0.199 1.199 21 H -0.213 1.213 22 H -0.160 1.160 23 C -0.102 4.102 24 N -0.083 5.083 25 O 0.019 5.981 26 C -0.045 4.045 27 C -0.119 4.119 28 N -0.208 5.208 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.234 0.766 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.156 0.844 39 H 0.092 0.908 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 21.241 -7.074 -2.159 22.492 hybrid contribution 0.467 -0.171 -0.134 0.515 sum 21.708 -7.245 -2.293 23.000 Atomic orbital electron populations 1.21816 0.93148 1.01043 1.04317 1.21930 0.98242 0.93891 1.02271 1.19069 0.81301 0.95711 0.90512 0.86384 1.45897 1.17980 1.60138 1.15083 1.18133 0.80477 0.77605 0.88113 1.90874 1.50159 1.57625 1.39577 1.18763 0.95879 1.12907 0.95627 1.20774 0.96785 0.96072 0.92254 1.20540 0.97968 1.07237 0.98189 1.20975 0.92987 0.95481 0.97370 1.21291 1.02296 1.07216 0.93765 1.18981 0.88722 0.90870 0.86924 1.83772 1.21439 1.69502 1.31695 1.20922 0.83578 1.38370 1.04237 0.87461 1.24497 0.93570 0.95691 0.99617 1.69640 1.02408 1.42930 1.35513 0.86202 0.81121 0.79378 0.80845 1.19860 1.21310 1.16021 1.25950 0.99888 0.99114 0.85213 1.74587 0.89831 1.20997 1.22853 1.85292 1.24437 1.62291 1.26112 1.28889 0.96101 0.94799 0.84684 1.20403 0.89772 1.04762 0.96997 1.71900 1.01290 1.20492 1.27100 0.93176 0.91662 0.91377 0.91476 0.91251 0.76641 0.86999 0.86982 0.86779 0.84361 0.90815 0.87951 0.88382 0.87647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 8.51 37.16 0.32 -2.02 16 2 C -0.12 -1.70 5.59 -26.73 -0.15 -1.85 16 3 C 0.24 3.61 2.80 -69.08 -0.19 3.42 16 4 H 0.12 1.98 7.58 -51.93 -0.39 1.58 16 5 N -0.73 -11.75 4.97 -55.98 -0.28 -12.02 16 6 C 0.57 11.37 6.33 -12.47 -0.08 11.29 16 7 O -0.51 -11.98 12.30 -16.57 -0.20 -12.19 16 8 C -0.23 -4.63 5.89 -104.81 -0.62 -5.25 16 9 C -0.04 -0.66 9.53 -39.20 -0.37 -1.04 16 10 C -0.22 -3.50 10.02 -39.61 -0.40 -3.89 16 11 C -0.05 -0.85 10.03 -39.53 -0.40 -1.25 16 12 C -0.23 -4.78 9.16 -39.44 -0.36 -5.14 16 13 C 0.20 4.76 6.66 -38.60 -0.26 4.51 16 14 O -0.16 -4.45 6.67 -21.06 -0.14 -4.59 16 15 C -0.40 -11.25 9.95 30.90 0.31 -10.94 16 16 H 0.11 3.04 5.44 -52.49 -0.29 2.76 16 17 C 0.07 2.06 5.49 -17.52 -0.10 1.96 16 18 N -0.87 -25.22 13.96 55.48 0.77 -24.45 16 19 Si 0.90 23.01 28.62 -169.99 -4.86 18.15 16 20 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.24 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.17 2.35 7.01 -156.38 -1.10 1.25 16 24 N -0.38 -4.82 11.85 30.90 0.37 -4.46 16 25 O 0.08 0.83 11.31 18.10 0.20 1.03 16 26 C 0.18 1.60 8.51 -13.06 -0.11 1.49 16 27 C -0.06 -0.21 10.51 36.01 0.38 0.16 16 28 N -0.47 -5.99 11.55 -9.87 -0.11 -6.10 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.13 7.84 -51.93 -0.41 0.72 16 31 H 0.07 1.27 5.64 -51.93 -0.29 0.98 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.40 5.64 6.38 -40.82 -0.26 5.38 16 35 H 0.11 1.50 6.40 -52.49 -0.34 1.16 16 36 H 0.11 1.44 8.06 -52.48 -0.42 1.01 16 37 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.14 3.02 5.64 -52.48 -0.30 2.72 16 39 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 41 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 42 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 356.76 15.07 5.38 5.38 Total: -1.00 -33.56 356.76 -6.79 -40.36 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -4.79 Total: 6.19 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -3.13 Total: -7.30 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.75 Total: -47.02 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.14 Total: -15.75 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.86 Total: 18.15 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.56 -6.79 -40.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361352693.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.597 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds