Wall clock time and date at job start Tue Mar 31 2020 16:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47521 * 2 1 4 4 H 1.08998 * 109.46663 * 305.00145 * 3 2 1 5 5 N 1.46503 * 109.46780 * 64.99594 * 3 2 1 6 6 C 1.34767 * 120.00152 * 275.00130 * 5 3 2 7 7 O 1.21592 * 120.00465 * 359.97438 * 6 5 3 8 8 C 1.47542 * 120.00121 * 180.02562 * 6 5 3 9 9 C 1.39662 * 120.19242 * 359.97438 * 8 6 5 10 10 C 1.37830 * 119.91390 * 180.02562 * 9 8 6 11 11 C 1.38572 * 120.32905 * 0.02562 * 10 9 8 12 12 C 1.38030 * 120.39703 * 0.02562 * 11 10 9 13 13 C 1.38834 * 120.07018 * 359.68551 * 12 11 10 14 14 O 1.35521 * 120.15856 * 180.29541 * 13 12 11 15 15 C 1.34815 * 117.00278 * 354.39143 * 14 13 12 16 16 H 1.07999 * 119.99990 * 5.05349 * 15 14 13 17 17 C 1.38695 * 120.00023 * 185.05495 * 15 14 13 18 18 N 1.31521 * 119.99653 * 180.02562 * 17 15 14 19 19 Si 1.86793 * 120.00333 * 359.97438 * 17 15 14 20 20 H 1.48510 * 109.47091 * 89.99887 * 19 17 15 21 21 H 1.48494 * 109.47555 * 210.00154 * 19 17 15 22 22 H 1.48504 * 109.47156 * 330.00259 * 19 17 15 23 23 C 1.50695 * 109.47035 * 184.99867 * 3 2 1 24 24 N 1.29950 * 126.28470 * 284.68388 * 23 3 2 25 25 O 1.21300 * 110.24782 * 179.84676 * 24 23 3 26 26 C 1.33645 * 109.81125 * 0.42933 * 25 24 23 27 27 C 1.50704 * 126.54862 * 179.71854 * 26 25 24 28 28 N 1.31126 * 106.89706 * 359.73359 * 26 25 24 29 29 H 1.09002 * 109.47313 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46692 * 59.99959 * 1 2 3 31 31 H 1.08996 * 109.47534 * 300.00281 * 1 2 3 32 32 H 1.09006 * 109.46692 * 120.00041 * 2 1 3 33 33 H 1.09000 * 109.47295 * 239.99259 * 2 1 3 34 34 H 0.97005 * 119.99755 * 95.00565 * 5 3 2 35 35 H 1.07994 * 120.04815 * 0.03099 * 9 8 6 36 36 H 1.08006 * 119.83942 * 179.97438 * 10 9 8 37 37 H 1.07994 * 119.80165 * 180.02562 * 11 10 9 38 38 H 1.08003 * 119.95832 * 179.97438 * 12 11 10 39 39 H 0.97000 * 119.99811 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.46915 * 270.01611 * 27 26 25 41 41 H 1.08999 * 109.47675 * 30.02405 * 27 26 25 42 42 H 1.08999 * 109.47012 * 150.02406 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0974 1.2518 6 6 0.4352 2.6644 1.3669 7 8 -0.3412 2.6327 0.4317 8 6 0.0450 3.3245 2.6274 9 6 0.9337 3.3637 3.7041 10 6 0.5631 3.9814 4.8791 11 6 -0.6884 4.5642 4.9988 12 6 -1.5775 4.5322 3.9434 13 6 -1.2191 3.9196 2.7502 14 8 -2.0884 3.8924 1.7109 15 6 -3.3271 4.3745 1.9362 16 1 -3.5637 4.8334 2.8848 17 6 -4.2977 4.2811 0.9498 18 7 -5.5059 4.7518 1.1695 19 14 -3.8884 3.4880 -0.6911 20 1 -4.1724 2.0319 -0.6218 21 1 -4.7167 4.1035 -1.7588 22 1 -2.4505 3.6977 -0.9973 23 6 3.5419 1.4441 -0.1238 24 7 4.3913 1.1501 0.8148 25 8 5.5265 1.2428 0.3977 26 6 5.5088 1.6251 -0.8828 27 6 6.7073 1.8611 -1.7656 28 7 4.2496 1.7559 -1.2241 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 0.5138 0.8899 32 1 1.8932 -0.5139 0.8901 33 1 1.8933 -0.5139 -0.8899 34 1 2.2719 2.1231 1.9978 35 1 1.9101 2.9108 3.6161 36 1 1.2512 4.0107 5.7111 37 1 -0.9698 5.0463 5.9232 38 1 -2.5513 4.9883 4.0446 39 1 -6.1848 4.6861 0.4798 40 1 7.0187 2.9025 -1.6845 41 1 7.5242 1.2119 -1.4505 42 1 6.4456 1.6397 -2.8002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361352693.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:42 Heat of formation + Delta-G solvation = 13.046431 kcal Electronic energy + Delta-G solvation = -28324.212677 eV Core-core repulsion = 24272.947636 eV Total energy + Delta-G solvation = -4051.265041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.75346 -41.59372 -40.30135 -38.25760 -37.75139 -36.31955 -34.53528 -34.21762 -33.77429 -31.84601 -30.83214 -29.78238 -28.64013 -27.26560 -24.95283 -24.77988 -23.50753 -23.13518 -22.01207 -21.41693 -19.85582 -19.67156 -19.27761 -18.60487 -17.91377 -17.58163 -16.77646 -16.47200 -16.12001 -15.90240 -15.65395 -15.58002 -15.48789 -15.33214 -14.71785 -14.32698 -14.23245 -14.18301 -14.12205 -14.04723 -13.87653 -13.16859 -13.10220 -12.97481 -12.87737 -12.65226 -12.59303 -12.46514 -12.42019 -12.20514 -12.02852 -11.99365 -11.54326 -11.02712 -10.97640 -10.73983 -10.28537 -9.91479 -9.18621 -8.58615 -6.27452 -0.00186 0.06987 0.61094 0.98503 1.24967 1.30077 1.58039 1.84632 1.91919 1.94910 2.28928 2.45917 2.74472 2.96511 2.99971 3.13264 3.65378 3.75188 3.86091 3.96399 4.00604 4.21115 4.27215 4.40653 4.44273 4.46244 4.54876 4.61176 4.66377 4.70499 4.76783 4.84673 4.93453 5.00042 5.01107 5.14184 5.24730 5.27759 5.35242 5.44257 5.58149 5.66422 5.81270 6.11679 6.43265 6.78135 7.05507 7.25970 7.56567 8.51745 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013345 B = 0.003749 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.623161 B = 7467.521377 C = 8867.027680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C 0.242 3.758 4 H 0.093 0.907 5 N -0.715 5.715 6 C 0.563 3.437 7 O -0.549 6.549 8 C -0.233 4.233 9 C -0.034 4.034 10 C -0.189 4.189 11 C -0.040 4.040 12 C -0.249 4.249 13 C 0.167 3.833 14 O -0.205 6.205 15 C -0.402 4.402 16 H 0.092 0.908 17 C 0.027 3.973 18 N -0.911 5.911 19 Si 0.954 3.046 20 H -0.275 1.275 21 H -0.268 1.268 22 H -0.264 1.264 23 C 0.158 3.842 24 N -0.383 5.383 25 O 0.086 5.914 26 C 0.195 3.805 27 C -0.062 4.062 28 N -0.509 5.509 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.410 0.590 35 H 0.154 0.846 36 H 0.165 0.835 37 H 0.153 0.847 38 H 0.118 0.882 39 H 0.286 0.714 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.665 -7.951 -0.099 28.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C 0.135 3.865 4 H 0.111 0.889 5 N -0.371 5.371 6 C 0.354 3.646 7 O -0.427 6.427 8 C -0.238 4.238 9 C -0.052 4.052 10 C -0.207 4.207 11 C -0.058 4.058 12 C -0.268 4.268 13 C 0.113 3.887 14 O -0.109 6.109 15 C -0.478 4.478 16 H 0.110 0.890 17 C -0.173 4.173 18 N -0.551 5.551 19 Si 0.778 3.222 20 H -0.200 1.200 21 H -0.193 1.193 22 H -0.188 1.188 23 C -0.115 4.115 24 N -0.090 5.090 25 O 0.024 5.976 26 C -0.024 4.024 27 C -0.119 4.119 28 N -0.244 5.244 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.247 0.753 35 H 0.171 0.829 36 H 0.183 0.817 37 H 0.171 0.829 38 H 0.136 0.864 39 H 0.095 0.905 40 H 0.140 0.860 41 H 0.146 0.854 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 26.311 -8.141 -0.587 27.548 hybrid contribution -0.578 0.121 -0.343 0.683 sum 25.733 -8.020 -0.931 26.970 Atomic orbital electron populations 1.21729 0.95048 1.01401 1.01709 1.21841 0.96249 0.93373 1.03730 1.18954 0.82768 0.95860 0.88900 0.88912 1.45653 1.16646 1.58828 1.15937 1.18229 0.81203 0.77546 0.87635 1.90867 1.51698 1.59184 1.40925 1.19170 0.95386 1.12148 0.97081 1.21274 0.97564 0.95300 0.91089 1.21202 0.97489 1.03173 0.98852 1.21448 0.92678 0.94363 0.97276 1.21353 1.02753 1.08088 0.94617 1.19668 0.89497 0.92039 0.87449 1.83762 1.21229 1.72472 1.33448 1.20887 0.84839 1.38348 1.03728 0.89039 1.25032 0.93715 0.96721 1.01865 1.69684 1.03094 1.45745 1.36578 0.85422 0.79248 0.78616 0.78870 1.20022 1.19300 1.18786 1.25562 0.99080 1.00692 0.86175 1.74552 0.90325 1.21161 1.22991 1.85265 1.23329 1.62146 1.26844 1.29913 0.96482 0.91863 0.84158 1.20819 0.88263 1.06588 0.96240 1.71899 1.02840 1.22308 1.27314 0.91230 0.93890 0.94395 0.90184 0.89411 0.75266 0.82866 0.81746 0.82933 0.86421 0.90454 0.86018 0.85360 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 8.51 71.98 0.61 -4.03 16 2 C -0.11 -3.01 5.59 30.59 0.17 -2.84 16 3 C 0.24 7.19 2.80 44.24 0.12 7.31 16 4 H 0.09 3.25 7.58 -2.39 -0.02 3.24 16 5 N -0.71 -22.27 4.97 -449.28 -2.23 -24.51 16 6 C 0.56 23.03 6.33 86.70 0.55 23.58 16 7 O -0.55 -27.41 12.30 16.89 0.21 -27.20 16 8 C -0.23 -9.42 5.89 -19.99 -0.12 -9.53 16 9 C -0.03 -0.99 9.53 22.52 0.21 -0.77 16 10 C -0.19 -4.93 10.02 22.25 0.22 -4.71 16 11 C -0.04 -1.23 10.03 22.30 0.22 -1.01 16 12 C -0.25 -10.65 9.16 22.36 0.20 -10.44 16 13 C 0.17 8.11 6.66 22.91 0.15 8.27 16 14 O -0.21 -11.89 6.67 0.82 0.01 -11.89 16 15 C -0.40 -24.51 9.95 67.93 0.68 -23.84 16 16 H 0.09 5.64 5.44 -2.91 -0.02 5.63 16 17 C 0.03 1.64 5.49 84.85 0.47 2.11 16 18 N -0.91 -55.91 13.96 21.62 0.30 -55.61 16 19 Si 0.95 50.85 28.62 68.60 1.96 52.81 16 20 H -0.27 -14.40 7.11 99.48 0.71 -13.69 16 21 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 22 H -0.26 -15.00 7.11 99.48 0.71 -14.30 16 23 C 0.16 4.08 7.01 138.46 0.97 5.05 16 24 N -0.38 -8.86 11.85 -60.32 -0.72 -9.57 16 25 O 0.09 1.54 11.31 74.82 0.85 2.39 16 26 C 0.20 2.99 8.51 88.38 0.75 3.74 16 27 C -0.06 -0.18 10.51 71.24 0.75 0.57 16 28 N -0.51 -12.06 11.55 -303.20 -3.50 -15.56 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.04 1.57 7.84 -2.38 -0.02 1.55 16 31 H 0.04 1.46 5.64 -2.39 -0.01 1.45 16 32 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.41 10.56 6.38 -92.70 -0.59 9.96 16 35 H 0.15 3.23 6.40 -2.91 -0.02 3.21 16 36 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 37 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 38 H 0.12 5.47 5.64 -2.91 -0.02 5.46 16 39 H 0.29 16.16 8.31 -92.71 -0.77 15.39 16 40 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 41 H 0.13 -0.32 8.14 -2.39 -0.02 -0.34 16 42 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 Total: -1.00 -81.47 356.76 3.34 -78.13 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.49 Total: 17.57 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 5.97 Total: -6.55 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -6.15 Total: -105.26 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: 1.06 Total: -36.70 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 1.96 Total: 52.81 kcal Total: -81.47 3.34 -78.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361352693.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.174 kcal (2) G-P(sol) polarization free energy of solvation -81.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds