Wall clock time and date at job start Tue Mar 31 2020 16:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47244 * 2 1 4 4 H 1.09002 * 109.47049 * 54.99947 * 3 2 1 5 5 N 1.46497 * 109.47015 * 294.99819 * 3 2 1 6 6 C 1.34774 * 120.00221 * 85.00198 * 5 3 2 7 7 O 1.21600 * 119.99694 * 359.97438 * 6 5 3 8 8 C 1.47535 * 120.00217 * 180.02562 * 6 5 3 9 9 C 1.39666 * 120.20000 * 0.02562 * 8 6 5 10 10 C 1.37826 * 119.92254 * 179.97438 * 9 8 6 11 11 C 1.38571 * 120.32200 * 359.97438 * 10 9 8 12 12 C 1.38025 * 120.40289 * 0.02562 * 11 10 9 13 13 C 1.38831 * 120.07200 * 0.02562 * 12 11 10 14 14 O 1.35518 * 120.16239 * 180.02562 * 13 12 11 15 15 C 1.34818 * 117.00205 * 354.39162 * 14 13 12 16 16 H 1.08011 * 119.99422 * 5.05603 * 15 14 13 17 17 C 1.38693 * 120.00642 * 185.05484 * 15 14 13 18 18 N 1.31518 * 120.00332 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99716 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.46910 * 89.99807 * 19 17 15 21 21 H 1.48498 * 109.46957 * 209.99907 * 19 17 15 22 22 H 1.48498 * 109.47151 * 330.00281 * 19 17 15 23 23 C 1.50704 * 109.47347 * 174.99513 * 3 2 1 24 24 N 1.29953 * 126.28071 * 75.02641 * 23 3 2 25 25 O 1.21305 * 110.24433 * 179.97438 * 24 23 3 26 26 C 1.33642 * 109.81107 * 359.97438 * 25 24 23 27 27 C 1.50701 * 126.54434 * 180.02562 * 26 25 24 28 28 N 1.31121 * 106.90280 * 359.76884 * 26 25 24 29 29 H 1.08996 * 109.47125 * 300.00310 * 1 2 3 30 30 H 1.09000 * 109.46538 * 60.00091 * 1 2 3 31 31 H 1.08998 * 109.47071 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47125 * 239.99690 * 2 1 3 33 33 H 1.09009 * 109.46948 * 119.99485 * 2 1 3 34 34 H 0.97004 * 120.00314 * 264.99831 * 5 3 2 35 35 H 1.07997 * 120.03255 * 359.97438 * 9 8 6 36 36 H 1.07991 * 119.83480 * 179.97438 * 10 9 8 37 37 H 1.07999 * 119.79485 * 180.27994 * 11 10 9 38 38 H 1.08003 * 119.96584 * 180.02562 * 12 11 10 39 39 H 0.96997 * 120.00041 * 180.02562 * 18 17 15 40 40 H 1.08992 * 109.47575 * 359.97438 * 27 26 25 41 41 H 1.09002 * 109.46895 * 119.97841 * 27 26 25 42 42 H 1.09008 * 109.46883 * 239.97454 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0974 -1.2518 6 6 0.4353 2.6643 -1.3670 7 8 -0.3415 2.6318 -0.4320 8 6 0.0448 3.3234 -2.6279 9 6 0.9331 3.3618 -3.7050 10 6 0.5622 3.9786 -4.8804 11 6 -0.6893 4.5613 -5.0000 12 6 -1.5777 4.5312 -3.9441 13 6 -1.2209 3.9153 -2.7521 14 8 -2.0919 3.8842 -1.7144 15 6 -3.2437 4.5692 -1.8612 16 1 -3.4743 5.0419 -2.8047 17 6 -4.1325 4.6671 -0.8010 18 7 -5.2563 5.3350 -0.9445 19 14 -3.7333 3.8502 0.8308 20 1 -2.9874 4.8029 1.6918 21 1 -4.9943 3.4541 1.5076 22 1 -2.9007 2.6444 0.5901 23 6 3.5420 1.4443 0.1240 24 7 4.3913 1.1452 -0.8131 25 8 5.5267 1.2431 -0.3974 26 6 5.5088 1.6260 0.8829 27 6 6.7072 1.8624 1.7656 28 7 4.2497 1.7619 1.2226 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 2.2720 2.1231 -1.9978 35 1 1.9095 2.9087 -3.6168 36 1 1.2503 4.0078 -5.7122 37 1 -0.9728 5.0384 -5.9265 38 1 -2.5515 4.9873 -4.0452 39 1 -5.8777 5.4037 -0.2029 40 1 7.6188 1.6721 1.1994 41 1 6.7042 2.8956 2.1130 42 1 6.6651 1.1906 2.6230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361352694.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:48 Heat of formation + Delta-G solvation = 37.116515 kcal Electronic energy + Delta-G solvation = -28318.311470 eV Core-core repulsion = 24268.090186 eV Total energy + Delta-G solvation = -4050.221284 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.86572 -40.01500 -38.69651 -36.70174 -36.46782 -35.25140 -33.33783 -32.46877 -32.40617 -30.37388 -29.22308 -29.20973 -27.39876 -25.30310 -23.93942 -23.36065 -22.51770 -21.55143 -20.67379 -20.02974 -18.40280 -18.28020 -17.91675 -17.39256 -16.40345 -16.25911 -15.27258 -14.95353 -14.74765 -14.68206 -14.25532 -14.04114 -13.93584 -13.86246 -13.75615 -13.49526 -13.15789 -12.81269 -12.69444 -12.37299 -12.35909 -12.17800 -11.96905 -11.52254 -11.41226 -11.36783 -11.30006 -11.23569 -10.84927 -10.75499 -10.72053 -10.16688 -10.05109 -9.63758 -9.10552 -8.90432 -8.85123 -8.40954 -7.49936 -6.48143 -4.13348 0.87216 1.54123 1.91560 2.17469 2.53487 3.08101 3.31363 3.37809 3.45465 3.59210 3.65427 3.84589 4.34482 4.48731 4.60884 4.71397 4.80556 4.85159 4.95181 5.07379 5.08935 5.18283 5.26766 5.35899 5.43392 5.49236 5.60776 5.70248 5.72692 5.87890 5.94296 6.02071 6.08267 6.28187 6.35949 6.51516 6.60720 6.70123 6.81350 6.98757 7.13097 7.46236 7.65256 7.83415 7.91232 7.93660 8.76855 8.87377 9.49633 10.56891 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013070 B = 0.003755 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.732769 B = 7454.270180 C = 8799.818378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.241 3.759 4 H 0.118 0.882 5 N -0.734 5.734 6 C 0.566 3.434 7 O -0.507 6.507 8 C -0.227 4.227 9 C -0.040 4.040 10 C -0.220 4.220 11 C -0.049 4.049 12 C -0.227 4.227 13 C 0.203 3.797 14 O -0.164 6.164 15 C -0.396 4.396 16 H 0.108 0.892 17 C 0.072 3.928 18 N -0.869 5.869 19 Si 0.900 3.100 20 H -0.274 1.274 21 H -0.287 1.287 22 H -0.236 1.236 23 C 0.172 3.828 24 N -0.376 5.376 25 O 0.079 5.921 26 C 0.176 3.824 27 C -0.061 4.061 28 N -0.474 5.474 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.398 0.602 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.139 0.861 39 H 0.282 0.718 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.155 -8.078 1.188 23.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.163 4.163 3 C 0.134 3.866 4 H 0.136 0.864 5 N -0.391 5.391 6 C 0.357 3.643 7 O -0.382 6.382 8 C -0.232 4.232 9 C -0.059 4.059 10 C -0.239 4.239 11 C -0.068 4.068 12 C -0.246 4.246 13 C 0.145 3.855 14 O -0.064 6.064 15 C -0.471 4.471 16 H 0.125 0.875 17 C -0.134 4.134 18 N -0.505 5.505 19 Si 0.724 3.276 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.159 1.159 23 C -0.101 4.101 24 N -0.083 5.083 25 O 0.019 5.981 26 C -0.045 4.045 27 C -0.119 4.119 28 N -0.208 5.208 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.234 0.766 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.156 0.844 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.122 0.878 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 20.732 -8.263 1.706 22.383 hybrid contribution 0.510 -0.069 0.180 0.545 sum 21.242 -8.332 1.886 22.895 Atomic orbital electron populations 1.21810 0.93117 1.00984 1.04335 1.21931 0.98261 0.93890 1.02254 1.19069 0.81304 0.95709 0.90513 0.86386 1.45898 1.17993 1.60128 1.15080 1.18136 0.80464 0.77586 0.88145 1.90877 1.50141 1.57586 1.39635 1.18763 0.95089 1.13815 0.95521 1.20775 0.96800 0.96059 0.92245 1.20536 0.98010 1.07168 0.98225 1.20974 0.93058 0.95436 0.97338 1.21289 1.02305 1.07408 0.93576 1.18983 0.87795 0.91117 0.87597 1.83771 1.26425 1.60915 1.35283 1.20924 0.93248 1.31030 1.01917 0.87463 1.24497 0.93993 0.95482 0.99397 1.69637 1.08922 1.38251 1.33681 0.86205 0.77783 0.82397 0.81177 1.19963 1.21298 1.15902 1.25957 0.99893 0.98994 0.85303 1.74587 0.89835 1.20979 1.22892 1.85300 1.24439 1.62292 1.26095 1.28889 0.96103 0.94783 0.84681 1.20397 0.89698 1.05165 0.96620 1.71887 1.01310 1.20519 1.27095 0.91649 0.91396 0.93220 0.91487 0.91264 0.76644 0.87002 0.86981 0.86781 0.84360 0.90812 0.88457 0.87760 0.87805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.51 37.16 0.32 -1.99 16 2 C -0.12 -1.69 5.59 -26.73 -0.15 -1.84 16 3 C 0.24 3.61 2.80 -69.08 -0.19 3.42 16 4 H 0.12 1.98 7.58 -51.93 -0.39 1.58 16 5 N -0.73 -11.74 4.97 -55.98 -0.28 -12.02 16 6 C 0.57 11.36 6.33 -12.47 -0.08 11.28 16 7 O -0.51 -11.97 12.30 -16.58 -0.20 -12.18 16 8 C -0.23 -4.63 5.89 -104.81 -0.62 -5.25 16 9 C -0.04 -0.66 9.54 -39.20 -0.37 -1.04 16 10 C -0.22 -3.50 10.02 -39.61 -0.40 -3.89 16 11 C -0.05 -0.85 10.03 -39.54 -0.40 -1.25 16 12 C -0.23 -4.78 9.16 -39.44 -0.36 -5.14 16 13 C 0.20 4.76 6.66 -38.60 -0.26 4.51 16 14 O -0.16 -4.45 6.67 -21.06 -0.14 -4.59 16 15 C -0.40 -11.25 9.95 30.90 0.31 -10.95 16 16 H 0.11 3.04 5.44 -52.48 -0.29 2.76 16 17 C 0.07 2.06 5.49 -17.52 -0.10 1.96 16 18 N -0.87 -25.23 13.96 55.48 0.77 -24.45 16 19 Si 0.90 23.01 28.62 -169.99 -4.86 18.15 16 20 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.24 -6.27 7.11 56.52 0.40 -5.87 16 23 C 0.17 2.35 7.01 -156.36 -1.10 1.26 16 24 N -0.38 -4.83 11.86 30.90 0.37 -4.46 16 25 O 0.08 0.83 11.31 18.10 0.20 1.04 16 26 C 0.18 1.61 8.51 -13.06 -0.11 1.50 16 27 C -0.06 -0.21 10.51 36.01 0.38 0.16 16 28 N -0.47 -6.01 11.55 -9.87 -0.11 -6.12 16 29 H 0.06 1.13 7.84 -51.93 -0.41 0.72 16 30 H 0.07 1.26 5.64 -51.93 -0.29 0.97 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 34 H 0.40 5.64 6.39 -40.82 -0.26 5.38 16 35 H 0.11 1.50 6.40 -52.49 -0.34 1.16 16 36 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 37 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.14 3.02 5.64 -52.48 -0.30 2.72 16 39 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 41 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.10 0.25 8.14 -51.92 -0.42 -0.18 16 LS Contribution 356.76 15.07 5.38 5.38 Total: -1.00 -33.56 356.76 -6.79 -40.35 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -4.79 Total: 6.18 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -3.13 Total: -7.26 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.75 Total: -47.06 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.14 Total: -15.73 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.86 Total: 18.15 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.56 -6.79 -40.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361352694.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.467 kcal (2) G-P(sol) polarization free energy of solvation -33.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds