Wall clock time and date at job start Tue Mar 31 2020 16:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47244 * 2 1 4 4 H 1.09002 * 109.47049 * 54.99947 * 3 2 1 5 5 N 1.46497 * 109.47015 * 294.99819 * 3 2 1 6 6 C 1.34774 * 120.00221 * 85.00198 * 5 3 2 7 7 O 1.21600 * 119.99694 * 359.97438 * 6 5 3 8 8 C 1.47535 * 120.00217 * 180.02562 * 6 5 3 9 9 C 1.39666 * 120.20000 * 0.02562 * 8 6 5 10 10 C 1.37826 * 119.92254 * 179.97438 * 9 8 6 11 11 C 1.38571 * 120.32200 * 359.97438 * 10 9 8 12 12 C 1.38025 * 120.40289 * 0.02562 * 11 10 9 13 13 C 1.38831 * 120.07200 * 0.02562 * 12 11 10 14 14 O 1.35518 * 120.16239 * 180.02562 * 13 12 11 15 15 C 1.34818 * 117.00205 * 354.39162 * 14 13 12 16 16 H 1.08011 * 119.99422 * 5.05603 * 15 14 13 17 17 C 1.38693 * 120.00642 * 185.05484 * 15 14 13 18 18 N 1.31518 * 120.00332 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99716 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.46910 * 89.99807 * 19 17 15 21 21 H 1.48498 * 109.46957 * 209.99907 * 19 17 15 22 22 H 1.48498 * 109.47151 * 330.00281 * 19 17 15 23 23 C 1.50704 * 109.47347 * 174.99513 * 3 2 1 24 24 N 1.29953 * 126.28071 * 75.02641 * 23 3 2 25 25 O 1.21305 * 110.24433 * 179.97438 * 24 23 3 26 26 C 1.33642 * 109.81107 * 359.97438 * 25 24 23 27 27 C 1.50701 * 126.54434 * 180.02562 * 26 25 24 28 28 N 1.31121 * 106.90280 * 359.76884 * 26 25 24 29 29 H 1.08996 * 109.47125 * 300.00310 * 1 2 3 30 30 H 1.09000 * 109.46538 * 60.00091 * 1 2 3 31 31 H 1.08998 * 109.47071 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47125 * 239.99690 * 2 1 3 33 33 H 1.09009 * 109.46948 * 119.99485 * 2 1 3 34 34 H 0.97004 * 120.00314 * 264.99831 * 5 3 2 35 35 H 1.07997 * 120.03255 * 359.97438 * 9 8 6 36 36 H 1.07991 * 119.83480 * 179.97438 * 10 9 8 37 37 H 1.07999 * 119.79485 * 180.27994 * 11 10 9 38 38 H 1.08003 * 119.96584 * 180.02562 * 12 11 10 39 39 H 0.96997 * 120.00041 * 180.02562 * 18 17 15 40 40 H 1.08992 * 109.47575 * 359.97438 * 27 26 25 41 41 H 1.09002 * 109.46895 * 119.97841 * 27 26 25 42 42 H 1.09008 * 109.46883 * 239.97454 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0974 -1.2518 6 6 0.4353 2.6643 -1.3670 7 8 -0.3415 2.6318 -0.4320 8 6 0.0448 3.3234 -2.6279 9 6 0.9331 3.3618 -3.7050 10 6 0.5622 3.9786 -4.8804 11 6 -0.6893 4.5613 -5.0000 12 6 -1.5777 4.5312 -3.9441 13 6 -1.2209 3.9153 -2.7521 14 8 -2.0919 3.8842 -1.7144 15 6 -3.2437 4.5692 -1.8612 16 1 -3.4743 5.0419 -2.8047 17 6 -4.1325 4.6671 -0.8010 18 7 -5.2563 5.3350 -0.9445 19 14 -3.7333 3.8502 0.8308 20 1 -2.9874 4.8029 1.6918 21 1 -4.9943 3.4541 1.5076 22 1 -2.9007 2.6444 0.5901 23 6 3.5420 1.4443 0.1240 24 7 4.3913 1.1452 -0.8131 25 8 5.5267 1.2431 -0.3974 26 6 5.5088 1.6260 0.8829 27 6 6.7072 1.8624 1.7656 28 7 4.2497 1.7619 1.2226 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 2.2720 2.1231 -1.9978 35 1 1.9095 2.9087 -3.6168 36 1 1.2503 4.0078 -5.7122 37 1 -0.9728 5.0384 -5.9265 38 1 -2.5515 4.9873 -4.0452 39 1 -5.8777 5.4037 -0.2029 40 1 7.6188 1.6721 1.1994 41 1 6.7042 2.8956 2.1130 42 1 6.6651 1.1906 2.6230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361352694.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:46 Heat of formation + Delta-G solvation = 12.935740 kcal Electronic energy + Delta-G solvation = -28319.360027 eV Core-core repulsion = 24268.090186 eV Total energy + Delta-G solvation = -4051.269841 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.75257 -41.59227 -40.30031 -38.25727 -37.74976 -36.31888 -34.53574 -34.21884 -33.77181 -31.84515 -30.83236 -29.78301 -28.63774 -27.26602 -24.95268 -24.77660 -23.50951 -23.13476 -22.01153 -21.41588 -19.85503 -19.67038 -19.27524 -18.60371 -17.91403 -17.57983 -16.77782 -16.48696 -16.11938 -15.80993 -15.71249 -15.60120 -15.48917 -15.33066 -14.69827 -14.34017 -14.23107 -14.20081 -14.12056 -14.04376 -13.87417 -13.16794 -13.09739 -12.96856 -12.87237 -12.65069 -12.59612 -12.46303 -12.41963 -12.20722 -12.02247 -11.98306 -11.54394 -11.02786 -10.97899 -10.73840 -10.28469 -9.91452 -9.18571 -8.58592 -6.27500 -0.00166 0.06936 0.61171 0.98296 1.25021 1.30256 1.58371 1.84661 1.92150 1.94957 2.29001 2.45994 2.74403 2.97366 2.98770 3.13340 3.65418 3.75381 3.86195 3.96423 4.00784 4.21129 4.27356 4.40997 4.44305 4.46252 4.55247 4.62752 4.65629 4.71002 4.76844 4.84964 4.92452 4.99722 5.01134 5.13944 5.24805 5.27914 5.36041 5.44300 5.58169 5.66427 5.81245 6.11698 6.43295 6.78134 7.05454 7.26008 7.56497 8.51722 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013070 B = 0.003755 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.732769 B = 7454.270180 C = 8799.818378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.113 4.113 3 C 0.242 3.758 4 H 0.093 0.907 5 N -0.715 5.715 6 C 0.563 3.437 7 O -0.549 6.549 8 C -0.233 4.233 9 C -0.034 4.034 10 C -0.189 4.189 11 C -0.040 4.040 12 C -0.249 4.249 13 C 0.167 3.833 14 O -0.205 6.205 15 C -0.402 4.402 16 H 0.092 0.908 17 C 0.027 3.973 18 N -0.911 5.911 19 Si 0.954 3.046 20 H -0.278 1.278 21 H -0.267 1.267 22 H -0.260 1.260 23 C 0.158 3.842 24 N -0.383 5.383 25 O 0.086 5.914 26 C 0.195 3.805 27 C -0.061 4.061 28 N -0.510 5.510 29 H 0.041 0.959 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.410 0.590 35 H 0.154 0.846 36 H 0.165 0.835 37 H 0.153 0.847 38 H 0.118 0.882 39 H 0.286 0.714 40 H 0.127 0.873 41 H 0.116 0.884 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.112 -9.254 -0.371 28.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C 0.135 3.865 4 H 0.111 0.889 5 N -0.371 5.371 6 C 0.354 3.646 7 O -0.427 6.427 8 C -0.238 4.238 9 C -0.052 4.052 10 C -0.207 4.207 11 C -0.058 4.058 12 C -0.268 4.268 13 C 0.114 3.886 14 O -0.109 6.109 15 C -0.478 4.478 16 H 0.110 0.890 17 C -0.173 4.173 18 N -0.551 5.551 19 Si 0.778 3.222 20 H -0.204 1.204 21 H -0.192 1.192 22 H -0.184 1.184 23 C -0.115 4.115 24 N -0.090 5.090 25 O 0.024 5.976 26 C -0.024 4.024 27 C -0.119 4.119 28 N -0.244 5.244 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.247 0.753 35 H 0.171 0.829 36 H 0.182 0.818 37 H 0.171 0.829 38 H 0.136 0.864 39 H 0.095 0.905 40 H 0.145 0.855 41 H 0.134 0.866 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 25.756 -9.454 0.111 27.437 hybrid contribution -0.533 0.240 0.389 0.702 sum 25.224 -9.215 0.501 26.859 Atomic orbital electron populations 1.21715 0.94978 1.01364 1.01680 1.21842 0.96290 0.93340 1.03718 1.18958 0.82755 0.95886 0.88899 0.88917 1.45655 1.16659 1.58822 1.15934 1.18231 0.81188 0.77526 0.87669 1.90870 1.51666 1.59149 1.40981 1.19169 0.94633 1.12976 0.97010 1.21274 0.97565 0.95287 0.91097 1.21198 0.97528 1.03111 0.98885 1.21447 0.92743 0.94305 0.97268 1.21350 1.02749 1.08289 0.94434 1.19669 0.88755 0.92374 0.87844 1.83762 1.26757 1.63216 1.37145 1.20888 0.94294 1.31230 1.01398 0.89047 1.25034 0.94248 0.96473 1.01587 1.69681 1.09989 1.40846 1.34595 0.85431 0.77597 0.80456 0.78742 1.20415 1.19232 1.18365 1.25573 0.99095 1.00562 0.86263 1.74553 0.90326 1.21134 1.23024 1.85273 1.23339 1.62144 1.26824 1.29910 0.96480 0.91862 0.84156 1.20813 0.88376 1.06182 0.96493 1.71885 1.02865 1.22316 1.27328 0.93963 0.94423 0.91216 0.90179 0.89428 0.75272 0.82870 0.81752 0.82938 0.86424 0.90456 0.85480 0.86587 0.86154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 8.51 71.98 0.61 -3.96 16 2 C -0.11 -2.99 5.59 30.59 0.17 -2.82 16 3 C 0.24 7.18 2.80 44.25 0.12 7.30 16 4 H 0.09 3.25 7.58 -2.39 -0.02 3.23 16 5 N -0.71 -22.26 4.97 -449.27 -2.23 -24.49 16 6 C 0.56 23.00 6.33 86.70 0.55 23.55 16 7 O -0.55 -27.37 12.30 16.86 0.21 -27.16 16 8 C -0.23 -9.41 5.89 -19.99 -0.12 -9.53 16 9 C -0.03 -0.99 9.54 22.52 0.21 -0.77 16 10 C -0.19 -4.94 10.02 22.25 0.22 -4.71 16 11 C -0.04 -1.23 10.03 22.30 0.22 -1.00 16 12 C -0.25 -10.65 9.16 22.36 0.20 -10.44 16 13 C 0.17 8.11 6.66 22.91 0.15 8.27 16 14 O -0.20 -11.86 6.67 0.82 0.01 -11.86 16 15 C -0.40 -24.52 9.95 67.93 0.68 -23.84 16 16 H 0.09 5.64 5.44 -2.91 -0.02 5.62 16 17 C 0.03 1.64 5.49 84.85 0.47 2.10 16 18 N -0.91 -55.95 13.96 21.62 0.30 -55.65 16 19 Si 0.95 50.81 28.62 68.60 1.96 52.77 16 20 H -0.28 -14.73 7.11 99.48 0.71 -14.02 16 21 H -0.27 -13.10 7.11 99.48 0.71 -12.40 16 22 H -0.26 -14.65 7.11 99.48 0.71 -13.94 16 23 C 0.16 4.09 7.01 138.46 0.97 5.06 16 24 N -0.38 -8.87 11.86 -60.30 -0.72 -9.58 16 25 O 0.09 1.55 11.31 74.83 0.85 2.39 16 26 C 0.20 3.00 8.51 88.38 0.75 3.75 16 27 C -0.06 -0.19 10.51 71.24 0.75 0.56 16 28 N -0.51 -12.10 11.55 -303.19 -3.50 -15.60 16 29 H 0.04 1.55 7.84 -2.39 -0.02 1.53 16 30 H 0.04 1.45 5.64 -2.39 -0.01 1.43 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.41 10.55 6.39 -92.71 -0.59 9.96 16 35 H 0.15 3.23 6.40 -2.91 -0.02 3.21 16 36 H 0.16 2.81 8.06 -2.92 -0.02 2.79 16 37 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 38 H 0.12 5.47 5.64 -2.91 -0.02 5.46 16 39 H 0.29 16.17 8.31 -92.71 -0.77 15.40 16 40 H 0.13 -0.31 8.14 -2.39 -0.02 -0.33 16 41 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.12 0.09 8.14 -2.38 -0.02 0.07 16 Total: -1.00 -81.40 356.76 3.34 -78.06 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.49 Total: 17.60 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 5.97 Total: -6.49 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -6.15 Total: -105.32 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: 1.06 Total: -36.62 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 1.96 Total: 52.77 kcal Total: -81.40 3.34 -78.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361352694.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.000 kcal (2) G-P(sol) polarization free energy of solvation -81.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds