Wall clock time and date at job start Tue Mar 31 2020 16:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35997 * 117.00133 * 2 1 4 4 C 1.38488 * 120.00301 * 359.97438 * 3 2 1 5 5 C 1.38497 * 120.34021 * 180.02562 * 4 3 2 6 6 C 1.37796 * 120.33975 * 359.66680 * 5 4 3 7 7 C 1.39771 * 120.00174 * 0.60650 * 6 5 4 8 8 C 1.47514 * 120.16509 * 179.69825 * 7 6 5 9 9 O 1.21606 * 119.99421 * 179.72418 * 8 7 6 10 10 N 1.34770 * 120.00010 * 359.72182 * 8 7 6 11 11 C 1.39389 * 119.99826 * 180.02562 * 10 8 7 12 12 C 1.36146 * 126.26290 * 0.03194 * 11 10 8 13 13 C 1.39733 * 107.86077 * 179.97438 * 12 11 10 14 14 C 1.50701 * 125.78313 * 180.02562 * 13 12 11 15 15 N 1.30835 * 108.43980 * 359.97438 * 13 12 11 16 16 N 1.35805 * 126.26302 * 179.97438 * 11 10 8 17 17 C 1.46502 * 126.09696 * 0.04580 * 16 11 10 18 18 C 1.50693 * 109.47064 * 270.00140 * 17 16 11 19 19 H 1.08003 * 120.00345 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00195 * 179.97438 * 18 17 16 21 21 N 1.31518 * 120.00586 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99760 * 359.97438 * 20 18 17 23 23 H 1.48492 * 109.47281 * 90.00298 * 22 20 18 24 24 H 1.48506 * 109.46948 * 210.00150 * 22 20 18 25 25 H 1.48503 * 109.47006 * 329.99760 * 22 20 18 26 26 C 1.39125 * 120.00740 * 180.02562 * 3 2 1 27 27 O 1.35746 * 120.16926 * 359.97438 * 26 3 2 28 28 H 1.09003 * 109.47729 * 59.99526 * 1 2 3 29 29 H 1.09000 * 109.47337 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47256 * 299.99079 * 1 2 3 31 31 H 1.07996 * 119.82684 * 0.02562 * 4 3 2 32 32 H 1.07993 * 119.82772 * 179.97438 * 5 4 3 33 33 H 1.08006 * 119.99717 * 180.33075 * 6 5 4 34 34 H 0.97003 * 120.00430 * 0.02562 * 10 8 7 35 35 H 1.07995 * 126.07235 * 0.02562 * 12 11 10 36 36 H 1.08999 * 109.46892 * 269.98683 * 14 13 12 37 37 H 1.08995 * 109.46609 * 29.97884 * 14 13 12 38 38 H 1.08994 * 109.47577 * 149.98210 * 14 13 12 39 39 H 1.09007 * 109.46832 * 29.99698 * 17 16 11 40 40 H 1.08996 * 109.47377 * 149.99274 * 17 16 11 41 41 H 0.96996 * 120.00102 * 180.02562 * 21 20 18 42 42 H 0.96693 * 114.00575 * 269.98005 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2922 2.3732 -0.0005 5 6 1.9137 3.6109 -0.0011 6 6 3.2888 3.6993 0.0058 7 6 4.0639 2.5362 0.0006 8 6 5.5363 2.6266 0.0013 9 8 6.2077 1.6126 0.0018 10 7 6.1374 3.8329 0.0012 11 6 7.5286 3.9183 0.0013 12 6 8.3997 2.8719 0.0008 13 6 9.6960 3.3934 0.0005 14 6 10.9698 2.5881 -0.0006 15 7 9.6167 4.6994 0.0002 16 7 8.2633 5.0604 0.0008 17 6 7.7347 6.4267 0.0010 18 6 7.5525 6.8951 -1.4197 19 1 7.8057 6.2406 -2.2407 20 6 7.0627 8.1590 -1.6715 21 7 6.9042 8.5681 -2.9114 22 14 6.6242 9.2908 -0.2514 23 1 7.8134 10.0966 0.1248 24 1 5.5222 10.1971 -0.6630 25 1 6.1882 8.4782 0.9126 26 6 3.4357 1.2847 -0.0005 27 8 4.1785 0.1485 -0.0005 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 0.2139 2.3135 -0.0005 32 1 1.3176 4.5114 -0.0019 33 1 3.7677 4.6673 0.0108 34 1 5.6018 4.6417 0.0012 35 1 8.1356 1.8247 -0.0001 36 1 11.2775 2.3935 1.0268 37 1 10.8009 1.6419 -0.5146 38 1 11.7522 3.1463 -0.5147 39 1 6.7738 6.4444 0.5154 40 1 8.4337 7.0868 0.5145 41 1 6.5600 9.4574 -3.0884 42 1 4.3944 -0.1804 0.8828 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361954427.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:18 Heat of formation + Delta-G solvation = 2.989813 kcal Electronic energy + Delta-G solvation = -27902.247610 eV Core-core repulsion = 23850.546481 eV Total energy + Delta-G solvation = -4051.701129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -41.14452 -40.53575 -39.19401 -37.60526 -36.72242 -34.75170 -33.75463 -32.17755 -31.15218 -30.03250 -29.45701 -28.17519 -27.60787 -26.29894 -24.23066 -22.72328 -22.44905 -21.33630 -19.90344 -19.55390 -18.63069 -17.87220 -17.20925 -16.96034 -16.77190 -16.26182 -15.87931 -15.57094 -15.18427 -15.13013 -14.50474 -14.43321 -14.22670 -14.02692 -13.79779 -13.16649 -12.83644 -12.76811 -12.64177 -12.54538 -12.43471 -12.29626 -11.89060 -11.80317 -11.59936 -11.44117 -11.14759 -10.91153 -10.83982 -10.49802 -10.24826 -9.93300 -9.76374 -9.52532 -9.18218 -8.86990 -8.44978 -7.94098 -7.48161 -6.33968 -4.38536 0.47764 1.02395 2.35914 2.57619 2.93597 3.03960 3.07512 3.13019 3.17128 3.42455 3.67634 3.70052 3.97936 4.12677 4.41250 4.53067 4.71294 4.78906 4.84181 4.90878 4.92321 5.09992 5.12809 5.30361 5.43764 5.60159 5.81145 5.84935 6.01429 6.04482 6.05967 6.12939 6.18844 6.26967 6.33471 6.35515 6.65373 6.74259 6.90636 7.19175 7.44623 7.53252 7.63602 7.76670 8.16754 8.29627 8.56751 8.73120 9.20345 10.78239 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.010563 B = 0.003879 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.195304 B = 7216.944121 C = 9477.425581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.090 3.910 4 C -0.171 4.171 5 C -0.094 4.094 6 C -0.105 4.105 7 C -0.121 4.121 8 C 0.565 3.435 9 O -0.491 6.491 10 N -0.635 5.635 11 C 0.305 3.695 12 C -0.288 4.288 13 C 0.055 3.945 14 C -0.063 4.063 15 N -0.281 5.281 16 N -0.346 5.346 17 C 0.230 3.770 18 C -0.546 4.546 19 H 0.082 0.918 20 C 0.080 3.920 21 N -0.882 5.882 22 Si 0.873 3.127 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.265 1.265 26 C 0.143 3.857 27 O -0.463 6.463 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.413 0.587 35 H 0.165 0.835 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.038 0.962 40 H 0.051 0.949 41 H 0.270 0.730 42 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.717 -13.341 9.644 21.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.044 3.956 4 C -0.190 4.190 5 C -0.112 4.112 6 C -0.124 4.124 7 C -0.125 4.125 8 C 0.352 3.648 9 O -0.365 6.365 10 N -0.283 5.283 11 C 0.084 3.916 12 C -0.320 4.320 13 C -0.111 4.111 14 C -0.122 4.122 15 N -0.106 5.106 16 N -0.132 5.132 17 C 0.111 3.889 18 C -0.584 4.584 19 H 0.100 0.900 20 C -0.124 4.124 21 N -0.519 5.519 22 Si 0.699 3.301 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.190 1.190 26 C 0.095 3.905 27 O -0.273 6.273 28 H 0.075 0.925 29 H 0.120 0.880 30 H 0.074 0.926 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.251 0.749 35 H 0.182 0.818 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -12.697 -12.837 8.915 20.136 hybrid contribution -1.438 0.860 0.903 1.904 sum -14.136 -11.977 9.818 20.968 Atomic orbital electron populations 1.23113 0.78346 1.04196 1.01377 1.86167 1.21239 1.25759 1.88702 1.19289 0.91349 0.85236 0.99694 1.21353 1.00393 0.91833 1.05400 1.20901 0.94201 0.97413 0.98644 1.21295 0.94137 0.97509 0.99435 1.19968 0.92692 0.93265 1.06585 1.17769 0.86956 0.82695 0.77355 1.90750 1.64597 1.34501 1.46611 1.42608 1.03811 1.09877 1.72001 1.17958 0.82090 0.88836 1.02752 1.21302 0.90094 0.99438 1.21173 1.22045 0.95851 0.91677 1.01493 1.20037 0.92090 0.97960 1.02075 1.77341 0.93964 1.13616 1.25663 1.49037 1.02508 1.05472 1.56165 1.19929 0.93924 0.75368 0.99667 1.21212 1.45501 1.01351 0.90373 0.89996 1.24827 0.94613 0.97231 0.95779 1.69876 1.44074 1.19289 1.18635 0.86917 0.79183 0.81556 0.82486 1.19453 1.20469 1.19012 1.17578 0.86023 0.85972 1.00914 1.84830 1.71280 1.38049 1.33125 0.92483 0.88028 0.92588 0.84573 0.84493 0.84578 0.74910 0.81815 0.91318 0.90971 0.91394 0.94423 0.93134 0.92025 0.75116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.21 10.28 -34.28 -0.35 -3.56 16 3 C 0.09 1.02 6.69 -39.16 -0.26 0.76 16 4 C -0.17 -1.55 9.03 -39.39 -0.36 -1.91 16 5 C -0.09 -0.88 10.02 -39.65 -0.40 -1.28 16 6 C -0.10 -1.21 9.53 -39.17 -0.37 -1.59 16 7 C -0.12 -1.69 5.88 -104.87 -0.62 -2.30 16 8 C 0.57 9.57 7.73 -12.48 -0.10 9.47 16 9 O -0.49 -9.26 12.28 -16.63 -0.20 -9.46 16 10 N -0.64 -11.39 5.36 -12.29 -0.07 -11.45 16 11 C 0.31 6.47 7.68 -152.74 -1.17 5.29 16 12 C -0.29 -5.94 9.58 -39.78 -0.38 -6.32 16 13 C 0.05 1.10 7.20 -82.46 -0.59 0.51 16 14 C -0.06 -0.94 10.44 36.01 0.38 -0.56 16 15 N -0.28 -6.49 12.56 33.64 0.42 -6.07 16 16 N -0.35 -8.02 3.62 -61.45 -0.22 -8.24 16 17 C 0.23 5.40 5.09 -5.20 -0.03 5.38 16 18 C -0.55 -14.95 9.94 -34.44 -0.34 -15.29 16 19 H 0.08 2.58 8.06 -52.48 -0.42 2.15 16 20 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 21 N -0.88 -25.59 13.96 55.43 0.77 -24.82 16 22 Si 0.87 19.36 27.47 -169.99 -4.67 14.69 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.27 -5.41 6.54 56.52 0.37 -5.04 16 26 C 0.14 1.91 6.73 -38.58 -0.26 1.65 16 27 O -0.46 -6.42 11.36 -47.55 -0.54 -6.96 16 28 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 31 H 0.14 0.84 6.27 -52.49 -0.33 0.51 16 32 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.14 1.45 6.40 -52.48 -0.34 1.11 16 34 H 0.41 6.68 6.02 -40.82 -0.25 6.44 16 35 H 0.16 3.28 5.83 -52.49 -0.31 2.98 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.04 0.80 6.58 -51.93 -0.34 0.46 16 40 H 0.05 1.19 7.57 -51.93 -0.39 0.79 16 41 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.39 3.87 9.06 45.56 0.41 4.29 16 LS Contribution 358.51 15.07 5.40 5.40 Total: -1.00 -35.29 358.51 -7.10 -42.39 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -4.04 Total: 11.06 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -3.61 Total: -2.98 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.91 Total: -50.58 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -1.10 Total: -19.98 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.67 Total: 14.69 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.29 -7.10 -42.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361954427.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.385 kcal (2) G-P(sol) polarization free energy of solvation -35.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds