Wall clock time and date at job start Tue Mar 31 2020 15:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30841 * 125.83200 * 2 1 4 4 N 1.40080 * 108.33596 * 180.02562 * 3 2 1 5 5 C 1.46501 * 126.06339 * 179.97438 * 4 3 2 6 6 C 1.50691 * 109.46800 * 90.02576 * 5 4 3 7 7 H 1.07996 * 120.00482 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99800 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99843 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99939 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47116 * 90.00392 * 10 8 6 12 12 H 1.48496 * 109.46973 * 209.99910 * 10 8 6 13 13 H 1.48493 * 109.47460 * 330.00203 * 10 8 6 14 14 C 1.35788 * 107.86636 * 359.73920 * 4 3 2 15 15 C 1.50707 * 126.20723 * 180.29862 * 14 4 3 16 16 C 1.35640 * 107.58431 * 0.42268 * 14 4 3 17 17 O 1.36192 * 126.06543 * 179.84182 * 16 14 4 18 18 C 1.34720 * 116.99588 * 269.71691 * 17 16 14 19 19 O 1.21544 * 120.00823 * 359.97438 * 18 17 16 20 20 C 1.47321 * 119.99666 * 179.97438 * 18 17 16 21 21 C 1.41648 * 120.26453 * 0.02562 * 20 18 17 22 22 C 1.35956 * 119.00410 * 180.27741 * 21 20 18 23 23 C 1.40776 * 119.50183 * 359.52166 * 22 21 20 24 24 O 1.21956 * 119.73719 * 180.26015 * 23 22 21 25 25 N 1.34533 * 120.51775 * 0.48007 * 23 22 21 26 26 C 1.46497 * 119.47110 * 179.73131 * 25 23 22 27 27 C 1.34569 * 121.05189 * 359.75282 * 25 23 22 28 28 H 1.09001 * 109.47216 * 269.97613 * 1 2 3 29 29 H 1.09004 * 109.46990 * 29.97670 * 1 2 3 30 30 H 1.08997 * 109.47206 * 149.96996 * 1 2 3 31 31 H 1.08994 * 109.46556 * 210.02603 * 5 4 3 32 32 H 1.08992 * 109.47135 * 330.02647 * 5 4 3 33 33 H 0.96997 * 119.99982 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.47058 * 270.16954 * 15 14 4 35 35 H 1.09001 * 109.46798 * 30.16935 * 15 14 4 36 36 H 1.09002 * 109.46576 * 150.16412 * 15 14 4 37 37 H 1.08002 * 120.49440 * 359.97438 * 21 20 18 38 38 H 1.07998 * 120.24892 * 179.72496 * 22 21 20 39 39 H 1.09003 * 109.47151 * 270.02042 * 26 25 23 40 40 H 1.09002 * 109.47478 * 30.02404 * 26 25 23 41 41 H 1.09003 * 109.47282 * 150.02316 * 26 25 23 42 42 H 1.08006 * 119.77492 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2730 1.0608 0.0000 4 7 3.6090 0.6396 -0.0006 5 6 4.7875 1.5098 -0.0013 6 6 5.1926 1.8079 1.4192 7 1 4.6290 1.3905 2.2404 8 6 6.2837 2.6126 1.6705 9 7 6.9704 3.1204 0.6705 10 14 6.7855 2.9827 3.4314 11 1 7.7496 1.9540 3.8979 12 1 7.4228 4.3225 3.4933 13 1 5.5832 2.9656 4.3027 14 6 3.6177 -0.7182 0.0049 15 6 4.8395 -1.6005 0.0128 16 6 2.3274 -1.1364 -0.0007 17 8 1.9041 -2.4308 -0.0009 18 6 1.7141 -3.0119 -1.2014 19 8 1.9195 -2.3825 -2.2207 20 6 1.2574 -4.4104 -1.2787 21 6 1.0158 -5.1490 -0.0945 22 6 0.6003 -6.4396 -0.1957 23 6 0.4102 -7.0088 -1.4691 24 8 0.0330 -8.1646 -1.5649 25 7 0.6454 -6.2892 -2.5812 26 6 0.4457 -6.9063 -3.8947 27 6 1.0617 -5.0117 -2.5061 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8897 -0.5143 31 1 5.6080 1.0097 -0.5159 32 1 4.5508 2.4417 -0.5147 33 1 7.7382 3.6862 0.8472 34 1 5.1394 -1.8149 -1.0130 35 1 5.6524 -1.0908 0.5300 36 1 4.6103 -2.5339 0.5270 37 1 1.1641 -4.6953 0.8743 38 1 0.4144 -7.0227 0.6941 39 1 1.3732 -7.3778 -4.2195 40 1 -0.3401 -7.6587 -3.8270 41 1 0.1553 -6.1415 -4.6151 42 1 1.2448 -4.4531 -3.4122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361993057.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:20 Heat of formation + Delta-G solvation = -4.256988 kcal Electronic energy + Delta-G solvation = -27637.143592 eV Core-core repulsion = 23585.128218 eV Total energy + Delta-G solvation = -4052.015374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.91000 -41.16104 -39.69395 -37.40398 -36.43285 -35.13758 -34.03943 -32.61444 -30.99929 -30.46422 -29.11131 -28.40709 -26.67235 -26.02020 -24.98647 -23.51944 -22.94937 -21.85084 -19.65782 -19.25980 -18.46104 -17.82222 -17.26219 -16.92903 -16.67789 -16.62232 -15.95240 -15.66946 -15.11831 -14.68708 -14.56349 -14.38855 -13.84869 -13.72281 -13.37540 -13.31721 -13.01171 -13.00149 -12.80875 -12.58952 -12.42676 -12.25351 -12.08447 -11.89633 -11.75719 -11.60836 -11.08258 -11.00904 -10.87060 -10.63270 -10.59031 -10.41704 -10.34256 -9.83144 -9.77727 -8.71611 -8.47741 -8.39690 -7.77618 -6.33477 -4.41809 0.32778 0.93365 1.91965 2.34611 2.57011 2.71175 3.16948 3.21710 3.24228 3.31339 3.32479 3.54314 4.09131 4.22937 4.23806 4.46263 4.61783 4.68232 4.73597 4.91630 5.01020 5.08153 5.11348 5.25353 5.47304 5.54632 5.65924 5.71564 5.75567 5.86694 5.89819 5.97604 6.04822 6.08478 6.25258 6.45255 6.48972 6.57244 6.87009 6.93918 7.19700 7.49674 7.56068 7.76884 7.78477 8.08151 8.38626 8.64504 9.25188 10.74260 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.022373 B = 0.002522 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.207487 B =11100.392481 C =11337.622740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.060 3.940 3 N -0.278 5.278 4 N -0.315 5.315 5 C 0.258 3.742 6 C -0.541 4.541 7 H 0.066 0.934 8 C 0.067 3.933 9 N -0.890 5.890 10 Si 0.908 3.092 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.271 1.271 14 C 0.107 3.893 15 C -0.094 4.094 16 C -0.103 4.103 17 O -0.246 6.246 18 C 0.504 3.496 19 O -0.499 6.499 20 C -0.227 4.227 21 C 0.020 3.980 22 C -0.249 4.249 23 C 0.515 3.485 24 O -0.541 6.541 25 N -0.491 5.491 26 C 0.053 3.947 27 C 0.213 3.787 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.269 0.731 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.153 0.847 38 H 0.157 0.843 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.076 -17.379 -6.484 21.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.106 4.106 3 N -0.103 5.103 4 N -0.095 5.095 5 C 0.141 3.859 6 C -0.579 4.579 7 H 0.084 0.916 8 C -0.137 4.137 9 N -0.527 5.527 10 Si 0.734 3.266 11 H -0.202 1.202 12 H -0.208 1.208 13 H -0.196 1.196 14 C -0.026 4.026 15 C -0.152 4.152 16 C -0.156 4.156 17 O -0.157 6.157 18 C 0.349 3.651 19 O -0.387 6.387 20 C -0.234 4.234 21 C -0.001 4.001 22 C -0.271 4.271 23 C 0.318 3.682 24 O -0.423 6.423 25 N -0.199 5.199 26 C -0.088 4.088 27 C 0.080 3.920 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.171 0.829 38 H 0.175 0.825 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.110 0.890 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -10.945 -16.473 -6.936 20.958 hybrid contribution 0.502 -0.344 0.821 1.022 sum -10.443 -16.817 -6.115 20.719 Atomic orbital electron populations 1.20030 0.87231 1.02447 1.02520 1.22251 0.96841 0.89871 1.01662 1.77374 0.87384 1.21620 1.23886 1.49363 1.06027 1.03633 1.50486 1.19801 0.77493 0.89377 0.99265 1.21295 1.13467 1.32053 0.91125 0.91590 1.24932 0.95630 0.94852 0.98268 1.69914 1.19033 1.32654 1.31116 0.86328 0.78850 0.77867 0.83519 1.20237 1.20802 1.19591 1.21027 0.95781 0.86359 0.99459 1.20446 0.94044 0.97758 1.02925 1.17530 0.90610 0.81654 1.25843 1.84721 1.76675 1.24214 1.30060 1.21103 0.74588 0.86265 0.83163 1.90856 1.47519 1.64448 1.35910 1.18568 1.17843 0.93813 0.93199 1.21666 0.87207 0.92602 0.98663 1.22024 1.11093 0.97061 0.96880 1.17370 0.79554 0.86640 0.84660 1.90945 1.48138 1.16509 1.86687 1.45240 1.52923 1.11100 1.10632 1.22341 1.04777 1.00588 0.81112 1.22300 0.86348 0.83531 0.99828 0.90677 0.90996 0.91662 0.92689 0.92456 0.92117 0.90713 0.89178 0.90339 0.82948 0.82548 0.89870 0.88194 0.88988 0.80143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.01 0.38 -0.55 16 2 C 0.06 1.16 7.22 -82.29 -0.59 0.57 16 3 N -0.28 -6.35 12.57 33.73 0.42 -5.92 16 4 N -0.31 -7.28 3.62 -58.04 -0.21 -7.49 16 5 C 0.26 6.45 5.84 -5.20 -0.03 6.42 16 6 C -0.54 -14.47 9.39 -34.44 -0.32 -14.80 16 7 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 8 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -24.48 13.29 55.43 0.74 -23.74 16 10 Si 0.91 20.59 29.54 -169.99 -5.02 15.57 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 14 C 0.11 2.17 6.97 -81.77 -0.57 1.60 16 15 C -0.09 -1.55 9.89 36.01 0.36 -1.19 16 16 C -0.10 -1.95 5.35 -39.79 -0.21 -2.16 16 17 O -0.25 -3.83 9.43 -25.67 -0.24 -4.07 16 18 C 0.50 7.04 7.83 34.42 0.27 7.31 16 19 O -0.50 -8.34 16.09 -19.30 -0.31 -8.65 16 20 C -0.23 -2.31 5.88 -104.96 -0.62 -2.92 16 21 C 0.02 0.18 9.66 -39.10 -0.38 -0.20 16 22 C -0.25 -2.29 9.97 -39.44 -0.39 -2.69 16 23 C 0.52 5.50 7.40 -15.41 -0.11 5.38 16 24 O -0.54 -7.42 16.58 4.96 0.08 -7.34 16 25 N -0.49 -3.94 2.95 -126.71 -0.37 -4.32 16 26 C 0.05 0.26 10.33 59.85 0.62 0.87 16 27 C 0.21 1.70 9.85 -16.41 -0.16 1.54 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 1.36 7.71 -51.93 -0.40 0.96 16 32 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.57 7.78 -51.93 -0.40 1.17 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.15 1.19 7.68 -52.49 -0.40 0.79 16 38 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.10 0.57 7.36 -51.93 -0.38 0.19 16 41 H 0.09 0.20 8.00 -51.93 -0.42 -0.21 16 42 H 0.18 1.09 7.57 -52.48 -0.40 0.70 16 LS Contribution 374.12 15.07 5.64 5.64 Total: -1.00 -34.06 374.12 -6.48 -40.54 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.33 Total: -1.08 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -1.87 Total: 0.86 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.58 Total: -41.47 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.47 Total: -20.06 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.06 -6.48 -40.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361993057.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.285 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds