Wall clock time and date at job start Tue Mar 31 2020 15:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30841 * 125.83200 * 2 1 4 4 N 1.40080 * 108.33596 * 180.02562 * 3 2 1 5 5 C 1.46501 * 126.06339 * 179.97438 * 4 3 2 6 6 C 1.50691 * 109.46800 * 90.02576 * 5 4 3 7 7 H 1.07996 * 120.00482 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99800 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99843 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99939 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47116 * 90.00392 * 10 8 6 12 12 H 1.48496 * 109.46973 * 209.99910 * 10 8 6 13 13 H 1.48493 * 109.47460 * 330.00203 * 10 8 6 14 14 C 1.35788 * 107.86636 * 359.73920 * 4 3 2 15 15 C 1.50707 * 126.20723 * 180.29862 * 14 4 3 16 16 C 1.35640 * 107.58431 * 0.42268 * 14 4 3 17 17 O 1.36192 * 126.06543 * 179.84182 * 16 14 4 18 18 C 1.34720 * 116.99588 * 269.71691 * 17 16 14 19 19 O 1.21544 * 120.00823 * 359.97438 * 18 17 16 20 20 C 1.47321 * 119.99666 * 179.97438 * 18 17 16 21 21 C 1.41648 * 120.26453 * 0.02562 * 20 18 17 22 22 C 1.35956 * 119.00410 * 180.27741 * 21 20 18 23 23 C 1.40776 * 119.50183 * 359.52166 * 22 21 20 24 24 O 1.21956 * 119.73719 * 180.26015 * 23 22 21 25 25 N 1.34533 * 120.51775 * 0.48007 * 23 22 21 26 26 C 1.46497 * 119.47110 * 179.73131 * 25 23 22 27 27 C 1.34569 * 121.05189 * 359.75282 * 25 23 22 28 28 H 1.09001 * 109.47216 * 269.97613 * 1 2 3 29 29 H 1.09004 * 109.46990 * 29.97670 * 1 2 3 30 30 H 1.08997 * 109.47206 * 149.96996 * 1 2 3 31 31 H 1.08994 * 109.46556 * 210.02603 * 5 4 3 32 32 H 1.08992 * 109.47135 * 330.02647 * 5 4 3 33 33 H 0.96997 * 119.99982 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.47058 * 270.16954 * 15 14 4 35 35 H 1.09001 * 109.46798 * 30.16935 * 15 14 4 36 36 H 1.09002 * 109.46576 * 150.16412 * 15 14 4 37 37 H 1.08002 * 120.49440 * 359.97438 * 21 20 18 38 38 H 1.07998 * 120.24892 * 179.72496 * 22 21 20 39 39 H 1.09003 * 109.47151 * 270.02042 * 26 25 23 40 40 H 1.09002 * 109.47478 * 30.02404 * 26 25 23 41 41 H 1.09003 * 109.47282 * 150.02316 * 26 25 23 42 42 H 1.08006 * 119.77492 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2730 1.0608 0.0000 4 7 3.6090 0.6396 -0.0006 5 6 4.7875 1.5098 -0.0013 6 6 5.1926 1.8079 1.4192 7 1 4.6290 1.3905 2.2404 8 6 6.2837 2.6126 1.6705 9 7 6.9704 3.1204 0.6705 10 14 6.7855 2.9827 3.4314 11 1 7.7496 1.9540 3.8979 12 1 7.4228 4.3225 3.4933 13 1 5.5832 2.9656 4.3027 14 6 3.6177 -0.7182 0.0049 15 6 4.8395 -1.6005 0.0128 16 6 2.3274 -1.1364 -0.0007 17 8 1.9041 -2.4308 -0.0009 18 6 1.7141 -3.0119 -1.2014 19 8 1.9195 -2.3825 -2.2207 20 6 1.2574 -4.4104 -1.2787 21 6 1.0158 -5.1490 -0.0945 22 6 0.6003 -6.4396 -0.1957 23 6 0.4102 -7.0088 -1.4691 24 8 0.0330 -8.1646 -1.5649 25 7 0.6454 -6.2892 -2.5812 26 6 0.4457 -6.9063 -3.8947 27 6 1.0617 -5.0117 -2.5061 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8897 -0.5143 31 1 5.6080 1.0097 -0.5159 32 1 4.5508 2.4417 -0.5147 33 1 7.7382 3.6862 0.8472 34 1 5.1394 -1.8149 -1.0130 35 1 5.6524 -1.0908 0.5300 36 1 4.6103 -2.5339 0.5270 37 1 1.1641 -4.6953 0.8743 38 1 0.4144 -7.0227 0.6941 39 1 1.3732 -7.3778 -4.2195 40 1 -0.3401 -7.6587 -3.8270 41 1 0.1553 -6.1415 -4.6151 42 1 1.2448 -4.4531 -3.4122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361993057.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:19 Heat of formation + Delta-G solvation = -24.525768 kcal Electronic energy + Delta-G solvation = -27638.022512 eV Core-core repulsion = 23585.128218 eV Total energy + Delta-G solvation = -4052.894294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.80058 -42.46504 -40.99686 -38.34176 -37.62012 -35.91852 -35.77711 -34.33797 -32.48772 -31.35961 -30.66064 -29.01244 -27.99301 -27.73748 -25.98804 -24.66279 -24.21384 -23.02621 -21.01367 -20.79154 -19.42115 -18.91505 -18.71838 -18.22724 -17.84522 -17.37581 -17.13314 -16.75405 -16.53918 -16.15886 -15.95268 -15.35682 -15.08461 -14.78246 -14.49122 -14.32463 -14.28657 -14.15337 -14.07053 -13.67640 -13.45382 -13.37514 -13.29570 -13.18711 -13.16846 -12.86017 -12.80490 -12.69506 -12.42643 -12.26992 -11.84874 -11.69858 -11.29317 -11.26745 -11.21455 -10.74943 -10.03590 -9.34516 -9.25772 -8.36194 -6.53575 -0.37403 0.09610 0.76203 1.13499 1.38196 1.39604 1.48741 1.51498 1.56743 1.66366 2.26032 2.33877 2.53756 2.95027 3.45861 3.52532 3.59303 3.67210 3.79922 3.90146 4.04767 4.11352 4.37147 4.38624 4.43126 4.59429 4.62295 4.73060 4.75620 4.77625 4.82299 4.87354 4.92383 4.93020 5.04468 5.04877 5.23383 5.29004 5.37093 5.50538 5.75674 5.75804 5.79762 6.07052 6.56031 6.71996 6.79891 6.86538 7.17783 8.71065 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.022373 B = 0.002522 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.207487 B =11100.392481 C =11337.622740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.060 3.940 3 N -0.325 5.325 4 N -0.343 5.343 5 C 0.275 3.725 6 C -0.555 4.555 7 H 0.053 0.947 8 C 0.024 3.976 9 N -0.918 5.918 10 Si 0.973 3.027 11 H -0.263 1.263 12 H -0.275 1.275 13 H -0.274 1.274 14 C 0.093 3.907 15 C -0.089 4.089 16 C -0.099 4.099 17 O -0.241 6.241 18 C 0.511 3.489 19 O -0.529 6.529 20 C -0.243 4.243 21 C 0.031 3.969 22 C -0.257 4.257 23 C 0.507 3.493 24 O -0.578 6.578 25 N -0.485 5.485 26 C 0.044 3.956 27 C 0.240 3.760 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.027 0.973 33 H 0.274 0.726 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.164 0.836 38 H 0.166 0.834 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.125 0.875 42 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.736 -18.886 -6.359 23.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 N -0.149 5.149 4 N -0.124 5.124 5 C 0.157 3.843 6 C -0.593 4.593 7 H 0.071 0.929 8 C -0.178 4.178 9 N -0.556 5.556 10 Si 0.796 3.204 11 H -0.188 1.188 12 H -0.200 1.200 13 H -0.199 1.199 14 C -0.039 4.039 15 C -0.147 4.147 16 C -0.152 4.152 17 O -0.152 6.152 18 C 0.358 3.642 19 O -0.419 6.419 20 C -0.250 4.250 21 C 0.010 3.990 22 C -0.278 4.278 23 C 0.311 3.689 24 O -0.463 6.463 25 N -0.190 5.190 26 C -0.095 4.095 27 C 0.105 3.895 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.182 0.818 38 H 0.184 0.816 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.143 0.857 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -11.614 -18.007 -6.828 22.489 hybrid contribution 0.603 0.010 0.667 0.899 sum -11.011 -17.998 -6.161 21.980 Atomic orbital electron populations 1.20221 0.83882 1.03722 1.04207 1.23063 0.98881 0.89342 0.99332 1.77297 0.87613 1.23661 1.26296 1.49103 1.05707 1.04517 1.53039 1.19306 0.78317 0.88576 0.98123 1.21418 1.13800 1.32583 0.91531 0.92874 1.25748 0.95364 0.94334 1.02320 1.70001 1.19445 1.33026 1.33101 0.85332 0.78443 0.78166 0.78440 1.18819 1.20041 1.19884 1.21668 0.97723 0.85598 0.98922 1.20539 0.92237 0.97995 1.03961 1.17530 0.90081 0.82977 1.24653 1.84704 1.76692 1.22491 1.31312 1.21486 0.73639 0.87148 0.81942 1.90856 1.49145 1.65371 1.36509 1.18347 1.20022 0.91969 0.94617 1.21706 0.86231 0.92208 0.98818 1.22073 1.11643 0.97247 0.96848 1.17639 0.79220 0.86331 0.85698 1.90929 1.49998 1.18063 1.87304 1.45341 1.51406 1.10889 1.11376 1.22651 1.05282 1.01512 0.80047 1.22574 0.83779 0.83136 0.99995 0.88649 0.90326 0.89742 0.93130 0.95458 0.91661 0.89364 0.90576 0.87593 0.81811 0.81624 0.88601 0.89137 0.85670 0.77709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.69 10.44 71.24 0.74 -0.95 16 2 C 0.06 2.32 7.22 43.17 0.31 2.63 16 3 N -0.32 -15.15 12.57 -47.20 -0.59 -15.74 16 4 N -0.34 -16.36 3.62 -337.53 -1.22 -17.59 16 5 C 0.28 14.41 5.84 85.63 0.50 14.91 16 6 C -0.56 -30.55 9.39 25.60 0.24 -30.31 16 7 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 8 C 0.02 1.27 5.46 84.66 0.46 1.73 16 9 N -0.92 -51.26 13.29 21.45 0.28 -50.98 16 10 Si 0.97 42.25 29.54 68.60 2.03 44.27 16 11 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 12 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 13 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 14 C 0.09 3.77 6.97 41.35 0.29 4.06 16 15 C -0.09 -2.90 9.89 71.24 0.70 -2.20 16 16 C -0.10 -3.66 5.35 22.13 0.12 -3.54 16 17 O -0.24 -7.04 9.43 -3.07 -0.03 -7.07 16 18 C 0.51 13.14 7.83 70.21 0.55 13.69 16 19 O -0.53 -16.72 16.09 19.70 0.32 -16.41 16 20 C -0.24 -4.28 5.88 -20.09 -0.12 -4.40 16 21 C 0.03 0.48 9.66 22.58 0.22 0.70 16 22 C -0.26 -4.25 9.97 22.36 0.22 -4.03 16 23 C 0.51 9.98 7.40 84.90 0.63 10.61 16 24 O -0.58 -15.40 16.58 -5.17 -0.09 -15.48 16 25 N -0.48 -6.50 2.95 -673.05 -1.99 -8.49 16 26 C 0.04 0.31 10.33 127.77 1.32 1.63 16 27 C 0.24 3.07 9.85 84.23 0.83 3.90 16 28 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 31 H 0.05 2.63 7.71 -2.39 -0.02 2.61 16 32 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 34 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.08 2.68 7.78 -2.39 -0.02 2.66 16 36 H 0.11 2.78 8.14 -2.39 -0.02 2.77 16 37 H 0.16 2.13 7.68 -2.91 -0.02 2.11 16 38 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 39 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.09 0.88 7.36 -2.39 -0.02 0.86 16 41 H 0.12 0.05 8.00 -2.39 -0.02 0.03 16 42 H 0.21 1.67 7.57 -2.91 -0.02 1.65 16 Total: -1.00 -75.79 374.12 6.78 -69.00 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 1.05 Total: 10.05 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 7.02 Total: 8.42 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -3.52 Total: -92.79 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: 0.20 Total: -38.96 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -75.79 6.78 -69.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361993057.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.479 kcal (2) G-P(sol) polarization free energy of solvation -75.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds