Wall clock time and date at job start Tue Mar 31 2020 16:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34235 * 117.00073 * 2 1 4 4 O 1.20823 * 119.99634 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00241 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47078 * 205.00381 * 5 3 2 7 7 C 1.52992 * 109.46956 * 85.00068 * 5 3 2 8 8 N 1.46496 * 109.47337 * 60.00210 * 7 5 3 9 9 C 1.36034 * 126.34990 * 265.02272 * 8 7 5 10 10 N 1.30109 * 110.10054 * 179.97438 * 9 8 7 11 11 C 1.35786 * 109.64369 * 0.02562 * 10 9 8 12 12 C 1.39738 * 133.59862 * 180.02562 * 11 10 9 13 13 C 1.36605 * 119.88498 * 179.97438 * 12 11 10 14 14 C 1.38769 * 120.66983 * 0.02562 * 13 12 11 15 15 C 1.37858 * 120.44849 * 359.97438 * 14 13 12 16 16 C 1.38060 * 126.34925 * 84.70896 * 8 7 5 17 17 N 1.46506 * 109.46928 * 325.00440 * 5 3 2 18 18 C 1.34782 * 119.99816 * 299.99605 * 17 5 3 19 19 O 1.21686 * 119.99748 * 0.02562 * 18 17 5 20 20 C 1.46376 * 119.99827 * 179.97438 * 18 17 5 21 21 H 1.07998 * 119.99781 * 0.02562 * 20 18 17 22 22 C 1.40042 * 119.99819 * 179.97438 * 20 18 17 23 23 N 1.30672 * 120.00261 * 0.02562 * 22 20 18 24 24 Si 1.86800 * 119.99923 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46845 * 60.00659 * 24 22 20 26 26 H 1.48500 * 109.47035 * 180.02562 * 24 22 20 27 27 H 1.48490 * 109.47405 * 300.00554 * 24 22 20 28 28 H 1.09000 * 109.46674 * 299.99362 * 1 2 3 29 29 H 1.08999 * 109.47221 * 59.99864 * 1 2 3 30 30 H 1.09007 * 109.46898 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 299.99793 * 6 5 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.47261 * 59.99965 * 6 5 3 34 34 H 1.09001 * 109.47066 * 180.02562 * 7 5 3 35 35 H 1.08996 * 109.47747 * 299.99900 * 7 5 3 36 36 H 1.07995 * 124.95303 * 0.02562 * 9 8 7 37 37 H 1.08006 * 120.06044 * 359.93775 * 12 11 10 38 38 H 1.08001 * 119.66226 * 179.97438 * 13 12 11 39 39 H 1.07996 * 119.77615 * 180.02562 * 14 13 12 40 40 H 1.08005 * 120.15358 * 179.97438 * 15 14 13 41 41 H 0.96992 * 119.99944 * 119.99997 * 17 5 3 42 42 H 0.96998 * 120.00333 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2750 -0.0006 6 6 4.0074 2.6070 0.6092 7 6 4.0816 1.1764 -1.4378 8 7 3.5344 2.2809 -2.2295 9 6 2.4196 2.2400 -3.0080 10 7 2.2231 3.3974 -3.5688 11 6 3.1999 4.2606 -3.1885 12 6 3.4707 5.5996 -3.4826 13 6 4.5602 6.2109 -2.9300 14 6 5.4053 5.5154 -2.0769 15 6 5.1576 4.1938 -1.7726 16 6 4.0512 3.5579 -2.3193 17 7 4.1136 0.1704 0.7912 18 6 3.7942 0.0532 2.0953 19 8 3.0510 0.8645 2.6150 20 6 4.3404 -1.0508 2.8862 21 1 4.9997 -1.7710 2.4248 22 6 4.0090 -1.1722 4.2414 23 7 3.2117 -0.3004 4.7998 24 14 4.7067 -2.5806 5.2510 25 1 6.1897 -2.5031 5.2499 26 1 4.2066 -2.4849 6.6460 27 1 4.2781 -3.8734 4.6595 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.6003 3.4288 0.0201 32 1 5.0959 2.6639 0.6092 33 1 3.6403 2.6772 1.6332 34 1 5.1701 1.2330 -1.4382 35 1 3.7674 0.2274 -1.8722 36 1 1.7889 1.3734 -3.1405 37 1 2.8201 6.1501 -4.1461 38 1 4.7664 7.2458 -3.1600 39 1 6.2623 6.0131 -1.6477 40 1 5.8188 3.6569 -1.1084 41 1 4.7057 -0.4765 0.3768 42 1 2.9819 -0.3847 5.7384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365022198.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:51 Heat of formation + Delta-G solvation = -34.420266 kcal Electronic energy + Delta-G solvation = -29463.455650 eV Core-core repulsion = 25410.132298 eV Total energy + Delta-G solvation = -4053.323352 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.24056 -40.19495 -37.85844 -37.26865 -36.10307 -35.30470 -33.21791 -32.43463 -30.55315 -29.81315 -29.28130 -27.57779 -26.62384 -26.21785 -23.53019 -23.24228 -22.08429 -21.19944 -20.21753 -19.23165 -17.81077 -17.37062 -17.19969 -16.59450 -16.19007 -16.09248 -15.78614 -15.36823 -15.32132 -14.42265 -14.18742 -14.09039 -13.74834 -13.69681 -13.51805 -13.09812 -12.77498 -12.51839 -12.42874 -12.03572 -11.83494 -11.75518 -11.64385 -11.63819 -11.42628 -11.21239 -11.17283 -11.04849 -10.61101 -10.40424 -10.32485 -10.29164 -9.95495 -9.89551 -8.97473 -8.31189 -8.08353 -7.94543 -7.76683 -6.32774 -4.80096 1.00574 1.56471 2.49087 2.65578 2.88519 3.07290 3.13183 3.14648 3.17678 3.93444 3.96331 4.28695 4.33038 4.40652 4.50680 4.59882 4.74927 4.98917 5.02868 5.07522 5.20296 5.41428 5.44670 5.46991 5.49622 5.56507 5.58641 5.73605 5.77836 5.86304 6.09146 6.16633 6.19957 6.46327 6.53846 6.56809 6.82747 6.89289 6.91186 7.10757 7.29653 7.53443 7.73704 7.90418 8.11579 8.29945 8.87714 9.23739 10.40686 10.59278 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.018465 B = 0.003744 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.009529 B = 7476.441983 C = 8285.093197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.345 6.345 3 C 0.471 3.529 4 O -0.504 6.504 5 C 0.186 3.814 6 C -0.153 4.153 7 C 0.111 3.889 8 N -0.485 5.485 9 C 0.268 3.732 10 N -0.495 5.495 11 C 0.045 3.955 12 C -0.067 4.067 13 C -0.131 4.131 14 C -0.107 4.107 15 C -0.104 4.104 16 C 0.059 3.941 17 N -0.749 5.749 18 C 0.558 3.442 19 O -0.567 6.567 20 C -0.539 4.539 21 H 0.070 0.930 22 C 0.088 3.912 23 N -0.763 5.763 24 Si 0.910 3.090 25 H -0.267 1.267 26 H -0.280 1.280 27 H -0.267 1.267 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.206 0.794 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.387 0.613 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.609 3.106 -14.123 14.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.261 6.261 3 C 0.312 3.688 4 O -0.390 6.390 5 C 0.095 3.905 6 C -0.211 4.211 7 C -0.013 4.013 8 N -0.175 5.175 9 C -0.017 4.017 10 N -0.213 5.213 11 C -0.073 4.073 12 C -0.086 4.086 13 C -0.151 4.151 14 C -0.126 4.126 15 C -0.125 4.125 16 C -0.050 4.050 17 N -0.408 5.408 18 C 0.364 3.636 19 O -0.449 6.449 20 C -0.575 4.575 21 H 0.088 0.912 22 C -0.133 4.133 23 N -0.391 5.391 24 Si 0.734 3.266 25 H -0.192 1.192 26 H -0.205 1.205 27 H -0.192 1.192 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.222 0.778 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.220 0.780 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.092 4.182 -14.027 14.786 hybrid contribution 0.866 -1.414 1.083 1.981 sum 2.959 2.768 -12.943 13.563 Atomic orbital electron populations 1.23150 0.77480 1.03040 1.01945 1.86551 1.22399 1.33386 1.83734 1.24010 0.91926 0.81341 0.71536 1.90621 1.66745 1.36521 1.45139 1.20109 0.86072 0.92936 0.91343 1.22258 1.00628 0.93461 1.04705 1.22046 1.00908 0.89049 0.89269 1.45248 1.23661 1.09522 1.39039 1.25189 0.87784 0.98150 0.90620 1.70426 1.24371 1.00084 1.26443 1.19047 0.93780 0.95083 0.99349 1.19972 0.97511 0.91135 1.00030 1.20599 0.95469 1.00037 0.99029 1.20862 0.99899 0.93340 0.98541 1.20102 0.95896 0.95187 1.01324 1.18808 0.98668 0.85463 1.02025 1.46351 1.54406 1.28488 1.11523 1.18268 0.80950 0.86276 0.78154 1.90624 1.39740 1.44950 1.69570 1.20750 1.31265 1.11060 0.94440 0.91196 1.25699 0.93516 0.96144 0.97908 1.69994 1.25720 1.31319 1.12078 0.86396 0.79863 0.81613 0.78705 1.19198 1.20533 1.19206 0.92029 0.92718 0.88607 0.91617 0.91863 0.88694 0.87109 0.87344 0.77800 0.85677 0.85629 0.85407 0.85766 0.77978 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.56 101.05 1.07 1.67 16 2 O -0.34 -6.73 10.17 -39.27 -0.40 -7.13 16 3 C 0.47 9.64 4.48 36.01 0.16 9.80 16 4 O -0.50 -11.49 15.67 -18.75 -0.29 -11.79 16 5 C 0.19 3.33 0.85 -132.97 -0.11 3.22 16 6 C -0.15 -2.93 6.68 37.16 0.25 -2.68 16 7 C 0.11 1.41 5.24 -4.05 -0.02 1.39 16 8 N -0.48 -6.85 2.36 -115.81 -0.27 -7.12 16 9 C 0.27 3.84 11.67 -89.79 -1.05 2.80 16 10 N -0.49 -8.06 11.27 -12.05 -0.14 -8.20 16 11 C 0.05 0.72 7.23 -84.70 -0.61 0.10 16 12 C -0.07 -0.89 10.05 -39.61 -0.40 -1.28 16 13 C -0.13 -1.46 9.96 -39.98 -0.40 -1.86 16 14 C -0.11 -1.20 10.03 -39.52 -0.40 -1.60 16 15 C -0.10 -1.35 8.55 -39.50 -0.34 -1.69 16 16 C 0.06 0.88 5.29 -83.99 -0.44 0.43 16 17 N -0.75 -14.69 4.87 -50.08 -0.24 -14.94 16 18 C 0.56 14.46 7.07 -12.98 -0.09 14.37 16 19 O -0.57 -17.01 12.22 5.20 0.06 -16.94 16 20 C -0.54 -14.06 9.54 -35.63 -0.34 -14.40 16 21 H 0.07 1.64 7.85 -52.49 -0.41 1.23 16 22 C 0.09 2.32 5.50 -17.37 -0.10 2.22 16 23 N -0.76 -21.85 11.83 55.55 0.66 -21.20 16 24 Si 0.91 19.11 29.56 -169.99 -5.02 14.08 16 25 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 26 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 27 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 28 H 0.06 1.10 8.13 -51.93 -0.42 0.68 16 29 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 30 H 0.10 1.22 8.14 -51.92 -0.42 0.80 16 31 H 0.07 1.26 5.35 -51.93 -0.28 0.98 16 32 H 0.06 1.05 7.24 -51.93 -0.38 0.67 16 33 H 0.09 2.29 6.16 -51.93 -0.32 1.97 16 34 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.11 1.11 8.13 -51.93 -0.42 0.69 16 36 H 0.21 2.26 8.06 -52.49 -0.42 1.83 16 37 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 38 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.12 1.44 6.95 -52.48 -0.36 1.08 16 41 H 0.39 6.25 8.45 -40.82 -0.35 5.90 16 42 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 LS Contribution 355.18 15.07 5.35 5.35 Total: -1.00 -36.80 355.18 -8.15 -44.95 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.03 Total: 10.44 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: -2.82 Total: 12.50 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.00 Total: -51.45 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -0.63 Total: -35.86 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.80 -8.15 -44.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365022198.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.527 kcal (2) G-P(sol) polarization free energy of solvation -36.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds