Wall clock time and date at job start Tue Mar 31 2020 16:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34235 * 117.00073 * 2 1 4 4 O 1.20823 * 119.99634 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00241 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47078 * 205.00381 * 5 3 2 7 7 C 1.52992 * 109.46956 * 85.00068 * 5 3 2 8 8 N 1.46496 * 109.47337 * 60.00210 * 7 5 3 9 9 C 1.36034 * 126.34990 * 265.02272 * 8 7 5 10 10 N 1.30109 * 110.10054 * 179.97438 * 9 8 7 11 11 C 1.35786 * 109.64369 * 0.02562 * 10 9 8 12 12 C 1.39738 * 133.59862 * 180.02562 * 11 10 9 13 13 C 1.36605 * 119.88498 * 179.97438 * 12 11 10 14 14 C 1.38769 * 120.66983 * 0.02562 * 13 12 11 15 15 C 1.37858 * 120.44849 * 359.97438 * 14 13 12 16 16 C 1.38060 * 126.34925 * 84.70896 * 8 7 5 17 17 N 1.46506 * 109.46928 * 325.00440 * 5 3 2 18 18 C 1.34782 * 119.99816 * 299.99605 * 17 5 3 19 19 O 1.21686 * 119.99748 * 0.02562 * 18 17 5 20 20 C 1.46376 * 119.99827 * 179.97438 * 18 17 5 21 21 H 1.07998 * 119.99781 * 0.02562 * 20 18 17 22 22 C 1.40042 * 119.99819 * 179.97438 * 20 18 17 23 23 N 1.30672 * 120.00261 * 0.02562 * 22 20 18 24 24 Si 1.86800 * 119.99923 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46845 * 60.00659 * 24 22 20 26 26 H 1.48500 * 109.47035 * 180.02562 * 24 22 20 27 27 H 1.48490 * 109.47405 * 300.00554 * 24 22 20 28 28 H 1.09000 * 109.46674 * 299.99362 * 1 2 3 29 29 H 1.08999 * 109.47221 * 59.99864 * 1 2 3 30 30 H 1.09007 * 109.46898 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 299.99793 * 6 5 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.47261 * 59.99965 * 6 5 3 34 34 H 1.09001 * 109.47066 * 180.02562 * 7 5 3 35 35 H 1.08996 * 109.47747 * 299.99900 * 7 5 3 36 36 H 1.07995 * 124.95303 * 0.02562 * 9 8 7 37 37 H 1.08006 * 120.06044 * 359.93775 * 12 11 10 38 38 H 1.08001 * 119.66226 * 179.97438 * 13 12 11 39 39 H 1.07996 * 119.77615 * 180.02562 * 14 13 12 40 40 H 1.08005 * 120.15358 * 179.97438 * 15 14 13 41 41 H 0.96992 * 119.99944 * 119.99997 * 17 5 3 42 42 H 0.96998 * 120.00333 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2750 -0.0006 6 6 4.0074 2.6070 0.6092 7 6 4.0816 1.1764 -1.4378 8 7 3.5344 2.2809 -2.2295 9 6 2.4196 2.2400 -3.0080 10 7 2.2231 3.3974 -3.5688 11 6 3.1999 4.2606 -3.1885 12 6 3.4707 5.5996 -3.4826 13 6 4.5602 6.2109 -2.9300 14 6 5.4053 5.5154 -2.0769 15 6 5.1576 4.1938 -1.7726 16 6 4.0512 3.5579 -2.3193 17 7 4.1136 0.1704 0.7912 18 6 3.7942 0.0532 2.0953 19 8 3.0510 0.8645 2.6150 20 6 4.3404 -1.0508 2.8862 21 1 4.9997 -1.7710 2.4248 22 6 4.0090 -1.1722 4.2414 23 7 3.2117 -0.3004 4.7998 24 14 4.7067 -2.5806 5.2510 25 1 6.1897 -2.5031 5.2499 26 1 4.2066 -2.4849 6.6460 27 1 4.2781 -3.8734 4.6595 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.6003 3.4288 0.0201 32 1 5.0959 2.6639 0.6092 33 1 3.6403 2.6772 1.6332 34 1 5.1701 1.2330 -1.4382 35 1 3.7674 0.2274 -1.8722 36 1 1.7889 1.3734 -3.1405 37 1 2.8201 6.1501 -4.1461 38 1 4.7664 7.2458 -3.1600 39 1 6.2623 6.0131 -1.6477 40 1 5.8188 3.6569 -1.1084 41 1 4.7057 -0.4765 0.3768 42 1 2.9819 -0.3847 5.7384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365022198.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:50 Heat of formation + Delta-G solvation = -59.182192 kcal Electronic energy + Delta-G solvation = -29464.529408 eV Core-core repulsion = 25410.132298 eV Total energy + Delta-G solvation = -4054.397109 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.30443 -41.72321 -39.57582 -38.28837 -37.66631 -36.84815 -34.78510 -34.25469 -31.76641 -31.21779 -30.27030 -28.96864 -28.17274 -27.79118 -24.98418 -24.22232 -23.16334 -22.71265 -21.52941 -20.77016 -19.47177 -18.86477 -18.22792 -17.98273 -17.78276 -17.44111 -17.18621 -16.74524 -16.64864 -15.86754 -15.61464 -15.24101 -14.96749 -14.94530 -14.62121 -14.55445 -14.38984 -14.30217 -13.78643 -13.32534 -13.19088 -13.08024 -13.06633 -12.89161 -12.77638 -12.70421 -12.61867 -12.44204 -12.37380 -12.06942 -11.80467 -11.70690 -11.31048 -10.96411 -10.90104 -9.85165 -9.71893 -9.29983 -9.07153 -8.28233 -6.84437 0.02455 0.58790 1.09487 1.40050 1.44892 1.46026 1.57068 1.74546 1.85722 2.24891 2.48945 2.83395 2.95556 3.33190 3.34353 3.42325 3.60457 3.67928 3.82894 4.04017 4.09635 4.19050 4.20768 4.23038 4.29650 4.48772 4.52203 4.55638 4.62102 4.63818 4.67848 4.85904 5.16460 5.23492 5.34030 5.36739 5.48717 5.60065 5.61211 5.83754 5.94310 5.98802 6.10416 6.23446 6.72897 6.84852 6.88737 7.47093 8.47335 8.66523 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.018465 B = 0.003744 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.009529 B = 7476.441983 C = 8285.093197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.355 6.355 3 C 0.467 3.533 4 O -0.538 6.538 5 C 0.186 3.814 6 C -0.139 4.139 7 C 0.118 3.882 8 N -0.485 5.485 9 C 0.261 3.739 10 N -0.526 5.526 11 C 0.010 3.990 12 C -0.086 4.086 13 C -0.124 4.124 14 C -0.103 4.103 15 C -0.118 4.118 16 C 0.042 3.958 17 N -0.731 5.731 18 C 0.548 3.452 19 O -0.616 6.616 20 C -0.563 4.563 21 H 0.095 0.905 22 C 0.032 3.968 23 N -0.820 5.820 24 Si 0.993 3.007 25 H -0.252 1.252 26 H -0.282 1.282 27 H -0.254 1.254 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.131 0.869 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.039 0.961 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.230 0.770 37 H 0.133 0.867 38 H 0.158 0.842 39 H 0.160 0.840 40 H 0.137 0.863 41 H 0.408 0.592 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.925 1.735 -15.243 16.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.270 6.270 3 C 0.309 3.691 4 O -0.427 6.427 5 C 0.095 3.905 6 C -0.197 4.197 7 C -0.004 4.004 8 N -0.175 5.175 9 C -0.025 4.025 10 N -0.246 5.246 11 C -0.107 4.107 12 C -0.106 4.106 13 C -0.144 4.144 14 C -0.122 4.122 15 C -0.139 4.139 16 C -0.067 4.067 17 N -0.389 5.389 18 C 0.353 3.647 19 O -0.502 6.502 20 C -0.599 4.599 21 H 0.113 0.887 22 C -0.183 4.183 23 N -0.450 5.450 24 Si 0.813 3.187 25 H -0.176 1.176 26 H -0.207 1.207 27 H -0.178 1.178 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.149 0.851 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.058 0.942 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.246 0.754 37 H 0.151 0.849 38 H 0.176 0.824 39 H 0.177 0.823 40 H 0.155 0.845 41 H 0.245 0.755 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.447 2.786 -15.213 16.093 hybrid contribution 0.101 -0.879 1.378 1.637 sum 4.547 1.907 -13.836 14.688 Atomic orbital electron populations 1.23416 0.75849 1.05261 1.01544 1.86525 1.24176 1.32967 1.83371 1.24540 0.92979 0.81101 0.70448 1.90600 1.67676 1.37562 1.46817 1.20269 0.84681 0.91333 0.94235 1.22085 1.01970 0.94463 1.01201 1.22172 1.02524 0.90168 0.85582 1.45266 1.23654 1.09634 1.38970 1.25695 0.88011 0.98459 0.90290 1.70369 1.25307 1.01087 1.27792 1.19510 0.94377 0.96227 1.00576 1.20291 0.98705 0.90699 1.00907 1.21010 0.94201 1.01405 0.97736 1.21324 1.00456 0.92818 0.97605 1.20399 0.95710 0.96078 1.01697 1.19118 0.99320 0.85828 1.02395 1.45778 1.53878 1.29215 1.10049 1.18522 0.80387 0.85810 0.79953 1.90610 1.41691 1.46474 1.71409 1.21340 1.31682 1.11688 0.95190 0.88710 1.26894 0.93272 0.98874 0.99310 1.70186 1.28052 1.34186 1.12567 0.85129 0.79525 0.77732 0.76326 1.17610 1.20740 1.17786 0.94920 0.90644 0.85099 0.91921 0.89269 0.94189 0.83908 0.84138 0.75428 0.84908 0.82395 0.82281 0.84519 0.75537 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 10.56 113.37 1.20 2.24 16 2 O -0.35 -13.76 10.17 -51.47 -0.52 -14.29 16 3 C 0.47 19.25 4.48 71.24 0.32 19.57 16 4 O -0.54 -25.34 15.67 21.97 0.34 -25.00 16 5 C 0.19 6.49 0.85 2.85 0.00 6.49 16 6 C -0.14 -5.38 6.68 71.98 0.48 -4.90 16 7 C 0.12 2.71 5.24 86.38 0.45 3.16 16 8 N -0.49 -13.06 2.36 -520.30 -1.23 -14.29 16 9 C 0.26 7.32 11.67 180.06 2.10 9.42 16 10 N -0.53 -17.30 11.27 -192.04 -2.17 -19.46 16 11 C 0.01 0.33 7.23 39.45 0.29 0.61 16 12 C -0.09 -2.24 10.05 22.25 0.22 -2.02 16 13 C -0.12 -2.49 9.96 22.01 0.22 -2.27 16 14 C -0.10 -2.05 10.03 22.31 0.22 -1.83 16 15 C -0.12 -2.84 8.55 22.32 0.19 -2.65 16 16 C 0.04 1.20 5.29 38.86 0.21 1.40 16 17 N -0.73 -27.80 4.87 -430.57 -2.10 -29.90 16 18 C 0.55 28.63 7.07 86.36 0.61 29.24 16 19 O -0.62 -38.41 12.22 -4.30 -0.05 -38.46 16 20 C -0.56 -29.06 9.54 24.83 0.24 -28.82 16 21 H 0.09 4.25 7.85 -2.91 -0.02 4.22 16 22 C 0.03 1.68 5.50 85.30 0.47 2.15 16 23 N -0.82 -48.39 11.83 21.83 0.26 -48.13 16 24 Si 0.99 38.62 29.56 68.60 2.03 40.65 16 25 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 26 H -0.28 -10.92 7.11 99.48 0.71 -10.22 16 27 H -0.25 -9.25 7.11 99.48 0.71 -8.54 16 28 H 0.03 1.21 8.13 -2.39 -0.02 1.19 16 29 H 0.07 2.06 8.13 -2.39 -0.02 2.04 16 30 H 0.13 3.16 8.14 -2.38 -0.02 3.14 16 31 H 0.06 2.44 5.35 -2.39 -0.01 2.43 16 32 H 0.09 2.86 7.24 -2.39 -0.02 2.84 16 33 H 0.04 2.00 6.16 -2.38 -0.01 1.98 16 34 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.14 2.35 8.13 -2.39 -0.02 2.33 16 36 H 0.23 4.78 8.06 -2.91 -0.02 4.76 16 37 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 38 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 39 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 40 H 0.14 2.82 6.95 -2.91 -0.02 2.80 16 41 H 0.41 12.06 8.45 -92.71 -0.78 11.28 16 42 H 0.27 14.78 8.29 -92.71 -0.77 14.01 16 Total: -1.00 -85.74 355.18 4.07 -81.67 By element: Atomic # 1 Polarization: 35.11 SS G_CDS: 0.29 Total: 35.39 kcal Atomic # 6 Polarization: 24.59 SS G_CDS: 7.22 Total: 31.81 kcal Atomic # 7 Polarization: -106.54 SS G_CDS: -5.23 Total: -111.78 kcal Atomic # 8 Polarization: -77.52 SS G_CDS: -0.23 Total: -77.75 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -85.74 4.07 -81.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365022198.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.489 kcal (2) G-P(sol) polarization free energy of solvation -85.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds