Wall clock time and date at job start Tue Mar 31 2020 16:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 116.99507 * 2 1 4 4 O 1.20819 * 120.00507 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99300 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.46739 * 155.00443 * 5 3 2 7 7 C 1.53006 * 109.47206 * 274.99784 * 5 3 2 8 8 N 1.46496 * 109.47030 * 300.00751 * 7 5 3 9 9 C 1.36045 * 126.34840 * 265.02142 * 8 7 5 10 10 N 1.30103 * 110.10061 * 179.74134 * 9 8 7 11 11 C 1.35789 * 109.64555 * 359.97438 * 10 9 8 12 12 C 1.39743 * 133.60223 * 180.02562 * 11 10 9 13 13 C 1.36597 * 119.88306 * 179.97438 * 12 11 10 14 14 C 1.38779 * 120.67288 * 0.03757 * 13 12 11 15 15 C 1.37854 * 120.44725 * 359.97438 * 14 13 12 16 16 C 1.38049 * 126.35415 * 84.71381 * 8 7 5 17 17 N 1.46496 * 109.47575 * 35.00477 * 5 3 2 18 18 C 1.34773 * 120.00371 * 59.99293 * 17 5 3 19 19 O 1.21692 * 119.99582 * 0.02562 * 18 17 5 20 20 C 1.46374 * 120.00341 * 180.02562 * 18 17 5 21 21 H 1.08004 * 119.99444 * 0.02562 * 20 18 17 22 22 C 1.40043 * 120.00118 * 179.97438 * 20 18 17 23 23 N 1.30670 * 120.00051 * 0.02562 * 22 20 18 24 24 Si 1.86801 * 120.00135 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47294 * 90.00047 * 24 22 20 26 26 H 1.48499 * 109.47475 * 210.00688 * 24 22 20 27 27 H 1.48507 * 109.46935 * 330.00586 * 24 22 20 28 28 H 1.08997 * 109.47477 * 299.99524 * 1 2 3 29 29 H 1.08997 * 109.47527 * 60.00073 * 1 2 3 30 30 H 1.09001 * 109.46952 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47214 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.46980 * 299.99466 * 6 5 3 33 33 H 1.09005 * 109.47679 * 59.99587 * 6 5 3 34 34 H 1.08990 * 109.46937 * 180.02562 * 7 5 3 35 35 H 1.08999 * 109.46600 * 60.00041 * 7 5 3 36 36 H 1.07994 * 124.94518 * 359.75735 * 9 8 7 37 37 H 1.07999 * 120.05230 * 359.97438 * 12 11 10 38 38 H 1.08006 * 119.66286 * 180.02562 * 13 12 11 39 39 H 1.08001 * 119.77391 * 180.02562 * 14 13 12 40 40 H 1.08000 * 120.15052 * 180.02562 * 15 14 13 41 41 H 0.97005 * 119.99558 * 239.99877 * 17 5 3 42 42 H 0.97004 * 120.00092 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0069 2.6073 -0.6100 7 6 4.0828 1.1757 1.4363 8 7 3.5361 2.2798 2.2289 9 6 4.1419 3.4728 2.4751 10 7 3.3723 4.2219 3.2095 11 6 2.2188 3.5602 3.4845 12 6 1.0713 3.8853 4.2126 13 6 0.0492 2.9844 4.3103 14 6 0.1370 1.7445 3.6932 15 6 1.2595 1.4021 2.9699 16 6 2.3084 2.3049 2.8596 17 7 4.1129 0.1708 -0.7933 18 6 3.7925 0.0541 -2.0972 19 8 3.0494 0.8662 -2.6161 20 6 4.3382 -1.0493 -2.8891 21 1 4.9973 -1.7702 -2.4283 22 6 4.0048 -1.1708 -4.2438 23 7 3.2069 -0.2989 -4.8011 24 14 4.7006 -2.5795 -5.2543 25 1 3.7816 -3.7435 -5.1796 26 1 4.8428 -2.1509 -6.6690 27 1 6.0309 -2.9638 -4.7175 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 5.0954 2.6646 -0.6101 32 1 3.6390 2.6779 -1.6336 33 1 3.6002 3.4288 -0.0203 34 1 5.1712 1.2332 1.4358 35 1 3.7688 0.2265 1.8704 36 1 5.1190 3.7568 2.1134 37 1 0.9928 4.8473 4.6973 38 1 -0.8363 3.2396 4.8736 39 1 -0.6800 1.0434 3.7795 40 1 1.3226 0.4360 2.4913 41 1 4.7055 -0.4763 -0.3797 42 1 2.9762 -0.3828 -5.7395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365022202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:54 Heat of formation + Delta-G solvation = -34.342288 kcal Electronic energy + Delta-G solvation = -29791.186400 eV Core-core repulsion = 25737.866430 eV Total energy + Delta-G solvation = -4053.319970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.22593 -40.13910 -37.92990 -37.21966 -36.02596 -35.21319 -33.27143 -32.45145 -30.66051 -29.57151 -29.25908 -27.55894 -26.80006 -26.20302 -23.54000 -23.13883 -21.98129 -21.33759 -20.19752 -19.21725 -17.81855 -17.32609 -17.17588 -16.53237 -16.24257 -16.14392 -15.77678 -15.36380 -15.25810 -14.40086 -14.20657 -14.04583 -13.71805 -13.65146 -13.46519 -13.07006 -12.82159 -12.51891 -12.41275 -11.99939 -11.86693 -11.72491 -11.63978 -11.48910 -11.45068 -11.33580 -11.20812 -11.06164 -10.62318 -10.41669 -10.32220 -10.21112 -9.94238 -9.87425 -8.98200 -8.29313 -8.07071 -7.94338 -7.77262 -6.33018 -4.80054 1.01472 1.58292 2.49602 2.75140 2.87170 3.05908 3.13376 3.16092 3.20861 3.95021 3.96424 4.29623 4.35077 4.39795 4.49959 4.61350 4.75763 4.99371 5.02858 5.09613 5.19921 5.43858 5.46894 5.47431 5.52417 5.57496 5.59535 5.71956 5.78894 5.88343 6.08273 6.12135 6.15589 6.46283 6.54054 6.56875 6.82372 6.90378 6.94481 7.12354 7.29721 7.53617 7.73968 7.90611 8.12064 8.35796 8.87830 9.23781 10.40630 10.59201 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.022312 B = 0.003773 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.612385 B = 7419.096336 C = 8040.216224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.346 6.346 3 C 0.474 3.526 4 O -0.501 6.501 5 C 0.185 3.815 6 C -0.152 4.152 7 C 0.111 3.889 8 N -0.486 5.486 9 C 0.268 3.732 10 N -0.498 5.498 11 C 0.048 3.952 12 C -0.066 4.066 13 C -0.130 4.130 14 C -0.105 4.105 15 C -0.106 4.106 16 C 0.060 3.940 17 N -0.749 5.749 18 C 0.558 3.442 19 O -0.567 6.567 20 C -0.538 4.538 21 H 0.070 0.930 22 C 0.088 3.912 23 N -0.763 5.763 24 Si 0.910 3.090 25 H -0.272 1.272 26 H -0.279 1.279 27 H -0.264 1.264 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.060 0.940 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.213 0.787 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.118 0.882 41 H 0.387 0.613 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.300 0.357 15.357 15.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.262 6.262 3 C 0.314 3.686 4 O -0.387 6.387 5 C 0.094 3.906 6 C -0.210 4.210 7 C -0.013 4.013 8 N -0.176 5.176 9 C -0.017 4.017 10 N -0.216 5.216 11 C -0.070 4.070 12 C -0.086 4.086 13 C -0.151 4.151 14 C -0.125 4.125 15 C -0.127 4.127 16 C -0.049 4.049 17 N -0.408 5.408 18 C 0.363 3.637 19 O -0.449 6.449 20 C -0.575 4.575 21 H 0.088 0.912 22 C -0.133 4.133 23 N -0.391 5.391 24 Si 0.734 3.266 25 H -0.197 1.197 26 H -0.204 1.204 27 H -0.188 1.188 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.119 0.881 36 H 0.229 0.771 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.136 0.864 41 H 0.220 0.780 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.966 2.045 15.003 15.173 hybrid contribution 0.270 -1.854 -0.911 2.084 sum -0.695 0.191 14.092 14.110 Atomic orbital electron populations 1.23165 0.77636 1.02914 1.02043 1.86536 1.22292 1.33484 1.83845 1.23853 0.91801 0.81379 0.71531 1.90615 1.66666 1.36456 1.44950 1.20101 0.86370 0.92898 0.91276 1.22147 1.00800 0.93280 1.04778 1.22052 1.00728 0.89439 0.89064 1.45255 1.14676 1.15532 1.42140 1.25310 0.99522 0.81001 0.95894 1.70437 1.03130 1.30166 1.17908 1.19004 0.94935 0.91184 1.01901 1.19962 0.90859 0.99718 0.98037 1.20577 0.98773 0.94038 1.01671 1.20810 0.96890 0.97032 0.97729 1.20028 0.92407 0.98585 1.01668 1.18809 0.88136 0.98427 0.99485 1.46340 1.54389 1.28514 1.11515 1.18274 0.80924 0.86305 0.78157 1.90625 1.39727 1.44918 1.69621 1.20784 1.31205 1.11041 0.94446 0.91160 1.25701 0.93517 0.96135 0.97925 1.70006 1.25770 1.31255 1.12071 0.86340 0.79975 0.81307 0.78981 1.19692 1.20421 1.18815 0.92541 0.92107 0.88744 0.91637 0.88518 0.92111 0.86434 0.88091 0.77076 0.85636 0.85617 0.85588 0.86398 0.77988 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.39 101.05 1.05 1.65 16 2 O -0.35 -6.86 9.53 -39.25 -0.37 -7.23 16 3 C 0.47 9.75 3.09 36.01 0.11 9.86 16 4 O -0.50 -11.46 14.81 -18.74 -0.28 -11.74 16 5 C 0.18 3.29 0.85 -132.97 -0.11 3.18 16 6 C -0.15 -2.83 7.55 37.16 0.28 -2.55 16 7 C 0.11 1.41 5.24 -4.04 -0.02 1.39 16 8 N -0.49 -6.82 2.29 -115.80 -0.27 -7.09 16 9 C 0.27 3.55 11.03 -89.78 -0.99 2.56 16 10 N -0.50 -7.85 11.27 -12.05 -0.14 -7.98 16 11 C 0.05 0.76 7.23 -84.70 -0.61 0.15 16 12 C -0.07 -0.91 10.05 -39.61 -0.40 -1.31 16 13 C -0.13 -1.55 9.96 -39.97 -0.40 -1.95 16 14 C -0.10 -1.30 10.03 -39.52 -0.40 -1.70 16 15 C -0.11 -1.54 8.21 -39.50 -0.32 -1.86 16 16 C 0.06 0.94 5.51 -83.99 -0.46 0.48 16 17 N -0.75 -14.69 4.87 -50.08 -0.24 -14.94 16 18 C 0.56 14.45 7.07 -12.99 -0.09 14.36 16 19 O -0.57 -17.00 12.22 5.20 0.06 -16.93 16 20 C -0.54 -14.06 9.54 -35.63 -0.34 -14.40 16 21 H 0.07 1.66 7.85 -52.48 -0.41 1.25 16 22 C 0.09 2.31 5.50 -17.37 -0.10 2.22 16 23 N -0.76 -21.85 11.83 55.55 0.66 -21.20 16 24 Si 0.91 19.11 29.56 -169.99 -5.02 14.09 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 27 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 28 H 0.06 0.83 7.44 -51.93 -0.39 0.44 16 29 H 0.06 1.11 8.13 -51.93 -0.42 0.69 16 30 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.10 2.29 6.16 -51.93 -0.32 1.97 16 33 H 0.06 1.11 6.36 -51.93 -0.33 0.78 16 34 H 0.12 1.07 8.13 -51.93 -0.42 0.64 16 35 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.21 1.87 8.06 -52.49 -0.42 1.44 16 37 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 38 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 39 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.12 1.68 6.63 -52.49 -0.35 1.33 16 41 H 0.39 6.26 8.45 -40.82 -0.35 5.91 16 42 H 0.27 7.07 8.29 -40.82 -0.34 6.74 16 LS Contribution 353.08 15.07 5.32 5.32 Total: -1.00 -37.14 353.08 -8.16 -45.30 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -5.08 Total: 10.31 kcal Atomic # 6 Polarization: 14.89 SS G_CDS: -2.80 Total: 12.09 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.01 Total: -51.21 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -0.59 Total: -35.91 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.14 -8.16 -45.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365022202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.958 kcal (2) G-P(sol) polarization free energy of solvation -37.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds