Wall clock time and date at job start Tue Mar 31 2020 16:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 116.99507 * 2 1 4 4 O 1.20819 * 120.00507 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99300 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.46739 * 155.00443 * 5 3 2 7 7 C 1.53006 * 109.47206 * 274.99784 * 5 3 2 8 8 N 1.46496 * 109.47030 * 300.00751 * 7 5 3 9 9 C 1.36045 * 126.34840 * 265.02142 * 8 7 5 10 10 N 1.30103 * 110.10061 * 179.74134 * 9 8 7 11 11 C 1.35789 * 109.64555 * 359.97438 * 10 9 8 12 12 C 1.39743 * 133.60223 * 180.02562 * 11 10 9 13 13 C 1.36597 * 119.88306 * 179.97438 * 12 11 10 14 14 C 1.38779 * 120.67288 * 0.03757 * 13 12 11 15 15 C 1.37854 * 120.44725 * 359.97438 * 14 13 12 16 16 C 1.38049 * 126.35415 * 84.71381 * 8 7 5 17 17 N 1.46496 * 109.47575 * 35.00477 * 5 3 2 18 18 C 1.34773 * 120.00371 * 59.99293 * 17 5 3 19 19 O 1.21692 * 119.99582 * 0.02562 * 18 17 5 20 20 C 1.46374 * 120.00341 * 180.02562 * 18 17 5 21 21 H 1.08004 * 119.99444 * 0.02562 * 20 18 17 22 22 C 1.40043 * 120.00118 * 179.97438 * 20 18 17 23 23 N 1.30670 * 120.00051 * 0.02562 * 22 20 18 24 24 Si 1.86801 * 120.00135 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47294 * 90.00047 * 24 22 20 26 26 H 1.48499 * 109.47475 * 210.00688 * 24 22 20 27 27 H 1.48507 * 109.46935 * 330.00586 * 24 22 20 28 28 H 1.08997 * 109.47477 * 299.99524 * 1 2 3 29 29 H 1.08997 * 109.47527 * 60.00073 * 1 2 3 30 30 H 1.09001 * 109.46952 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47214 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.46980 * 299.99466 * 6 5 3 33 33 H 1.09005 * 109.47679 * 59.99587 * 6 5 3 34 34 H 1.08990 * 109.46937 * 180.02562 * 7 5 3 35 35 H 1.08999 * 109.46600 * 60.00041 * 7 5 3 36 36 H 1.07994 * 124.94518 * 359.75735 * 9 8 7 37 37 H 1.07999 * 120.05230 * 359.97438 * 12 11 10 38 38 H 1.08006 * 119.66286 * 180.02562 * 13 12 11 39 39 H 1.08001 * 119.77391 * 180.02562 * 14 13 12 40 40 H 1.08000 * 120.15052 * 180.02562 * 15 14 13 41 41 H 0.97005 * 119.99558 * 239.99877 * 17 5 3 42 42 H 0.97004 * 120.00092 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0069 2.6073 -0.6100 7 6 4.0828 1.1757 1.4363 8 7 3.5361 2.2798 2.2289 9 6 4.1419 3.4728 2.4751 10 7 3.3723 4.2219 3.2095 11 6 2.2188 3.5602 3.4845 12 6 1.0713 3.8853 4.2126 13 6 0.0492 2.9844 4.3103 14 6 0.1370 1.7445 3.6932 15 6 1.2595 1.4021 2.9699 16 6 2.3084 2.3049 2.8596 17 7 4.1129 0.1708 -0.7933 18 6 3.7925 0.0541 -2.0972 19 8 3.0494 0.8662 -2.6161 20 6 4.3382 -1.0493 -2.8891 21 1 4.9973 -1.7702 -2.4283 22 6 4.0048 -1.1708 -4.2438 23 7 3.2069 -0.2989 -4.8011 24 14 4.7006 -2.5795 -5.2543 25 1 3.7816 -3.7435 -5.1796 26 1 4.8428 -2.1509 -6.6690 27 1 6.0309 -2.9638 -4.7175 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 5.0954 2.6646 -0.6101 32 1 3.6390 2.6779 -1.6336 33 1 3.6002 3.4288 -0.0203 34 1 5.1712 1.2332 1.4358 35 1 3.7688 0.2265 1.8704 36 1 5.1190 3.7568 2.1134 37 1 0.9928 4.8473 4.6973 38 1 -0.8363 3.2396 4.8736 39 1 -0.6800 1.0434 3.7795 40 1 1.3226 0.4360 2.4913 41 1 4.7055 -0.4763 -0.3797 42 1 2.9762 -0.3828 -5.7395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365022202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:53 Heat of formation + Delta-G solvation = -59.638867 kcal Electronic energy + Delta-G solvation = -29792.283342 eV Core-core repulsion = 25737.866430 eV Total energy + Delta-G solvation = -4054.416912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.29115 -41.65914 -39.58884 -38.36758 -37.57574 -36.73826 -34.79245 -34.27834 -32.00751 -30.87136 -30.28721 -28.97022 -28.19209 -27.92957 -24.91783 -24.18164 -23.09080 -22.82926 -21.52892 -20.77020 -19.47847 -18.81526 -18.20920 -17.93876 -17.79504 -17.49543 -17.20627 -16.82353 -16.52605 -15.85746 -15.59369 -15.23562 -15.00899 -14.84289 -14.66688 -14.54886 -14.41717 -14.22366 -13.73347 -13.34146 -13.18955 -13.09109 -12.96019 -12.88988 -12.85550 -12.74619 -12.61426 -12.52535 -12.40747 -12.01890 -11.78698 -11.66023 -11.32045 -10.97075 -10.92054 -9.83539 -9.70901 -9.31635 -9.09880 -8.28576 -6.84411 0.00619 0.55962 1.18580 1.41190 1.42851 1.47126 1.58612 1.76783 1.87869 2.24779 2.49093 2.85992 2.92166 3.32774 3.36229 3.45010 3.65372 3.68720 3.86450 4.02821 4.05523 4.15351 4.19972 4.21900 4.31953 4.47954 4.49530 4.54234 4.59760 4.63240 4.66442 4.81133 5.17242 5.21613 5.34192 5.42022 5.44169 5.54893 5.56220 5.84127 5.93864 5.95996 6.15256 6.23620 6.79022 6.86805 6.88817 7.47323 8.47519 8.66592 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.022312 B = 0.003773 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.612385 B = 7419.096336 C = 8040.216224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.358 6.358 3 C 0.470 3.530 4 O -0.534 6.534 5 C 0.182 3.818 6 C -0.142 4.142 7 C 0.119 3.881 8 N -0.489 5.489 9 C 0.271 3.729 10 N -0.529 5.529 11 C 0.016 3.984 12 C -0.084 4.084 13 C -0.125 4.125 14 C -0.105 4.105 15 C -0.125 4.125 16 C 0.038 3.962 17 N -0.731 5.731 18 C 0.548 3.452 19 O -0.616 6.616 20 C -0.562 4.562 21 H 0.094 0.906 22 C 0.032 3.968 23 N -0.820 5.820 24 Si 0.993 3.007 25 H -0.265 1.265 26 H -0.280 1.280 27 H -0.244 1.244 28 H 0.073 0.927 29 H 0.032 0.968 30 H 0.129 0.871 31 H 0.099 0.901 32 H 0.040 0.960 33 H 0.060 0.940 34 H 0.165 0.835 35 H 0.116 0.884 36 H 0.253 0.747 37 H 0.137 0.863 38 H 0.160 0.840 39 H 0.155 0.845 40 H 0.116 0.884 41 H 0.408 0.592 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.084 -1.528 16.901 17.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.274 6.274 3 C 0.312 3.688 4 O -0.423 6.423 5 C 0.091 3.909 6 C -0.200 4.200 7 C -0.004 4.004 8 N -0.179 5.179 9 C -0.013 4.013 10 N -0.249 5.249 11 C -0.101 4.101 12 C -0.104 4.104 13 C -0.145 4.145 14 C -0.124 4.124 15 C -0.146 4.146 16 C -0.070 4.070 17 N -0.389 5.389 18 C 0.353 3.647 19 O -0.502 6.502 20 C -0.599 4.599 21 H 0.112 0.888 22 C -0.184 4.184 23 N -0.450 5.450 24 Si 0.813 3.187 25 H -0.190 1.190 26 H -0.205 1.205 27 H -0.167 1.167 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.147 0.853 31 H 0.118 0.882 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.183 0.817 35 H 0.134 0.866 36 H 0.269 0.731 37 H 0.155 0.845 38 H 0.177 0.823 39 H 0.173 0.827 40 H 0.134 0.866 41 H 0.244 0.756 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.444 0.130 16.617 16.624 hybrid contribution -0.258 -1.215 -1.321 1.813 sum 0.185 -1.085 15.296 15.336 Atomic orbital electron populations 1.23396 0.76155 1.05033 1.01483 1.86511 1.23966 1.33309 1.83569 1.24427 0.92947 0.81053 0.70366 1.90589 1.67610 1.37436 1.46624 1.20306 0.84847 0.91537 0.94187 1.22010 1.02706 0.94019 1.01238 1.22176 1.03092 0.89950 0.85181 1.45322 1.14416 1.16042 1.42100 1.26135 1.00390 0.80242 0.94582 1.70408 1.03753 1.31214 1.19477 1.19458 0.95813 0.91808 1.02998 1.20317 0.90948 1.00830 0.98298 1.20983 0.99234 0.93325 1.00952 1.21247 0.96943 0.97741 0.96518 1.20212 0.93119 0.98592 1.02649 1.19101 0.89088 0.98713 1.00141 1.45767 1.53842 1.29287 1.10030 1.18517 0.80354 0.85821 0.79968 1.90612 1.41661 1.46433 1.71468 1.21366 1.31632 1.11663 0.95197 0.88755 1.26892 0.93280 0.98857 0.99333 1.70194 1.28087 1.34134 1.12594 0.85082 0.79882 0.77106 0.76662 1.19003 1.20493 1.16690 0.90799 0.94942 0.85313 0.88247 0.94132 0.92080 0.81737 0.86551 0.73138 0.84500 0.82286 0.82721 0.86617 0.75604 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.08 10.39 113.37 1.18 2.26 16 2 O -0.36 -14.23 9.53 -51.40 -0.49 -14.72 16 3 C 0.47 19.52 3.09 71.24 0.22 19.74 16 4 O -0.53 -25.22 14.81 21.98 0.33 -24.90 16 5 C 0.18 6.32 0.85 2.86 0.00 6.32 16 6 C -0.14 -5.26 7.55 71.98 0.54 -4.71 16 7 C 0.12 2.70 5.24 86.38 0.45 3.15 16 8 N -0.49 -12.90 2.29 -520.28 -1.19 -14.09 16 9 C 0.27 6.71 11.03 180.06 1.99 8.70 16 10 N -0.53 -16.41 11.27 -192.03 -2.16 -18.58 16 11 C 0.02 0.52 7.23 39.45 0.29 0.80 16 12 C -0.08 -2.27 10.05 22.25 0.22 -2.04 16 13 C -0.13 -2.76 9.96 22.02 0.22 -2.54 16 14 C -0.11 -2.43 10.03 22.31 0.22 -2.21 16 15 C -0.12 -3.51 8.21 22.32 0.18 -3.32 16 16 C 0.04 1.16 5.51 38.86 0.21 1.38 16 17 N -0.73 -27.80 4.87 -430.56 -2.10 -29.89 16 18 C 0.55 28.64 7.07 86.36 0.61 29.25 16 19 O -0.62 -38.39 12.22 -4.32 -0.05 -38.45 16 20 C -0.56 -29.08 9.54 24.83 0.24 -28.84 16 21 H 0.09 4.25 7.85 -2.91 -0.02 4.23 16 22 C 0.03 1.67 5.50 85.30 0.47 2.14 16 23 N -0.82 -48.44 11.83 21.83 0.26 -48.19 16 24 Si 0.99 38.72 29.56 68.60 2.03 40.75 16 25 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 26 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 27 H -0.24 -8.64 7.11 99.48 0.71 -7.93 16 28 H 0.07 2.14 7.44 -2.39 -0.02 2.12 16 29 H 0.03 1.23 8.13 -2.39 -0.02 1.21 16 30 H 0.13 3.24 8.14 -2.39 -0.02 3.22 16 31 H 0.10 2.90 8.14 -2.38 -0.02 2.88 16 32 H 0.04 1.98 6.16 -2.39 -0.01 1.97 16 33 H 0.06 2.23 6.36 -2.38 -0.02 2.21 16 34 H 0.17 2.18 8.13 -2.39 -0.02 2.16 16 35 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.25 3.62 8.06 -2.91 -0.02 3.60 16 37 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 39 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.12 3.19 6.63 -2.91 -0.02 3.17 16 41 H 0.41 12.09 8.45 -92.70 -0.78 11.31 16 42 H 0.27 14.75 8.29 -92.70 -0.77 13.98 16 Total: -1.00 -86.91 353.08 3.95 -82.96 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: 0.29 Total: 35.03 kcal Atomic # 6 Polarization: 23.02 SS G_CDS: 7.05 Total: 30.07 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -5.20 Total: -110.75 kcal Atomic # 8 Polarization: -77.84 SS G_CDS: -0.22 Total: -78.06 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -86.91 3.95 -82.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365022202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.318 kcal (2) G-P(sol) polarization free energy of solvation -86.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds